Wall clock time and date at job start Tue Mar 31 2020 07:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47198 * 2 1 4 4 H 1.08999 * 109.47254 * 54.99753 * 3 2 1 5 5 C 1.50700 * 109.47150 * 174.99681 * 3 2 1 6 6 H 1.08005 * 119.99682 * 120.00120 * 5 3 2 7 7 C 1.37873 * 119.99990 * 299.99718 * 5 3 2 8 8 N 1.31508 * 120.00443 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00003 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46781 * 60.00348 * 9 7 5 11 11 H 1.48495 * 109.47096 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47297 * 300.00861 * 9 7 5 13 13 N 1.46504 * 109.47352 * 294.99838 * 3 2 1 14 14 C 1.34773 * 119.99863 * 85.27286 * 13 3 2 15 15 O 1.21365 * 120.00309 * 359.73076 * 14 13 3 16 16 C 1.49284 * 120.00135 * 179.72490 * 14 13 3 17 17 O 1.21372 * 119.99480 * 354.73388 * 16 14 13 18 18 C 1.47308 * 120.00432 * 174.72579 * 16 14 13 19 19 C 1.39967 * 120.16280 * 186.03129 * 18 16 14 20 20 C 1.37777 * 119.83547 * 179.74349 * 19 18 16 21 21 C 1.38616 * 120.16098 * 0.51048 * 20 19 18 22 22 Cl 1.73599 * 119.83581 * 179.73984 * 21 20 19 23 23 C 1.38616 * 120.32467 * 359.77053 * 21 20 19 24 24 C 1.37773 * 120.16140 * 359.96705 * 23 21 20 25 25 H 1.09003 * 109.46467 * 59.99957 * 1 2 3 26 26 H 1.08998 * 109.47293 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47127 * 300.00340 * 1 2 3 28 28 H 1.09004 * 109.47319 * 239.99885 * 2 1 3 29 29 H 1.08998 * 109.47112 * 119.99746 * 2 1 3 30 30 H 0.96998 * 120.00703 * 179.97438 * 8 7 5 31 31 H 0.96998 * 119.99826 * 265.00228 * 13 3 2 32 32 H 1.08003 * 120.07941 * 0.02562 * 19 18 16 33 33 H 1.08002 * 119.91750 * 180.25293 * 20 19 18 34 34 H 1.08006 * 119.92414 * 179.97438 * 23 21 20 35 35 H 1.08005 * 120.08338 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8800 1.3813 10 1 6.5004 2.2800 1.3810 11 1 6.3977 0.2158 2.6500 12 1 6.5967 0.1453 0.2345 13 7 1.6525 2.0975 -1.2518 14 6 0.4373 2.6692 -1.3651 15 8 -0.3378 2.6372 -0.4318 16 6 0.0447 3.3421 -2.6386 17 8 0.8521 3.4584 -3.5373 18 6 -1.3226 3.8646 -2.8045 19 6 -1.7327 4.3820 -4.0387 20 6 -3.0148 4.8641 -4.1878 21 6 -3.8942 4.8473 -3.1165 22 17 -5.5055 5.4632 -3.3120 23 6 -3.4932 4.3418 -1.8897 24 6 -2.2160 3.8514 -1.7271 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8292 -0.0617 2.9496 31 1 2.2720 2.1231 -1.9978 32 1 -1.0474 4.3991 -4.8732 33 1 -3.3339 5.2599 -5.1407 34 1 -4.1836 4.3323 -1.0592 35 1 -1.9047 3.4582 -0.7706 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183860606.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:10 Heat of formation + Delta-G solvation = -65.593811 kcal Electronic energy + Delta-G solvation = -20864.533522 eV Core-core repulsion = 17467.120125 eV Total energy + Delta-G solvation = -3397.413398 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.85478 -40.08841 -39.35946 -37.53607 -37.06872 -34.37959 -32.81621 -32.26365 -32.12737 -29.21330 -26.97616 -25.04937 -23.98748 -23.39123 -21.65194 -21.16143 -19.34345 -18.39238 -17.91404 -17.65446 -16.95801 -16.80827 -16.36222 -15.97135 -15.46560 -15.35333 -15.11957 -14.60831 -14.56264 -14.40378 -13.82079 -13.47087 -13.32242 -13.20079 -12.95586 -12.85091 -12.66839 -12.52811 -12.39154 -12.15600 -12.09700 -11.80988 -11.58145 -11.10487 -10.57109 -10.29992 -10.15758 -9.89847 -9.81611 -8.18305 -6.35469 -0.87057 0.24317 0.50099 0.97695 1.45494 1.46288 1.54069 1.86836 2.00512 2.41709 2.63319 3.11176 3.28212 3.63181 3.76650 3.86560 4.16969 4.22417 4.50193 4.56865 4.58050 4.73462 4.95005 5.00163 5.03825 5.09522 5.14442 5.25549 5.40173 5.45201 5.56342 5.64467 5.70415 5.79906 5.93598 6.13257 6.67295 6.72860 7.15235 7.37133 8.86401 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.034190 B = 0.003218 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.745794 B = 8700.242693 C = 9135.604154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 C 0.275 3.725 4 H 0.016 0.984 5 C -0.556 4.556 6 H 0.067 0.933 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.967 3.033 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.267 1.267 13 N -0.676 5.676 14 C 0.468 3.532 15 O -0.533 6.533 16 C 0.401 3.599 17 O -0.436 6.436 18 C -0.178 4.178 19 C -0.042 4.042 20 C -0.125 4.125 21 C -0.001 4.001 22 Cl -0.055 7.055 23 C -0.131 4.131 24 C -0.060 4.060 25 H 0.042 0.958 26 H 0.047 0.953 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.267 0.733 31 H 0.406 0.594 32 H 0.156 0.844 33 H 0.168 0.832 34 H 0.155 0.845 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.506 7.612 -11.747 19.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C 0.173 3.827 4 H 0.034 0.966 5 C -0.594 4.594 6 H 0.085 0.915 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.792 3.208 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.192 1.192 13 N -0.325 5.325 14 C 0.251 3.749 15 O -0.414 6.414 16 C 0.275 3.725 17 O -0.309 6.309 18 C -0.179 4.179 19 C -0.060 4.060 20 C -0.144 4.144 21 C -0.028 4.028 22 Cl -0.025 7.025 23 C -0.150 4.150 24 C -0.078 4.078 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.241 0.759 32 H 0.173 0.827 33 H 0.185 0.815 34 H 0.173 0.827 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -13.723 7.593 -11.397 19.387 hybrid contribution 1.147 -0.112 0.215 1.172 sum -12.576 7.481 -11.181 18.416 Atomic orbital electron populations 1.21709 0.96433 0.99651 1.00582 1.21809 0.94257 0.98567 1.01553 1.18608 0.93920 0.89606 0.80604 0.96625 1.21513 0.91423 1.39567 1.06876 0.91472 1.25664 1.03073 0.94204 0.94925 1.69995 1.37042 1.37896 1.09761 0.85479 0.79366 0.78426 0.77577 1.19787 1.20903 1.19238 1.46405 1.14863 1.53030 1.18245 1.20908 0.83311 0.80995 0.89644 1.90494 1.50544 1.59547 1.40782 1.22624 0.88399 0.75829 0.85646 1.90541 1.52596 1.46461 1.41321 1.20199 0.94022 1.06788 0.96934 1.21531 0.95974 0.92476 0.96064 1.21250 0.92152 1.01433 0.99515 1.21545 0.87360 0.98278 0.95653 1.98392 1.21088 1.85474 1.97591 1.21340 0.96778 0.99723 0.97132 1.22623 0.91920 0.92721 1.00500 0.93908 0.93396 0.94391 0.94331 0.90445 0.92387 0.75866 0.82660 0.81478 0.82714 0.81669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.25 8.52 71.98 0.61 -4.63 16 2 C -0.12 -5.78 5.45 30.59 0.17 -5.62 16 3 C 0.28 13.53 2.24 44.24 0.10 13.63 16 4 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 5 C -0.56 -28.90 8.73 25.60 0.22 -28.68 16 6 H 0.07 3.35 7.74 -2.91 -0.02 3.32 16 7 C 0.02 1.17 5.29 84.65 0.45 1.62 16 8 N -0.91 -50.12 11.29 21.44 0.24 -49.87 16 9 Si 0.97 41.42 29.54 68.60 2.03 43.45 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 11 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 13 N -0.68 -27.88 5.01 -447.60 -2.24 -30.13 16 14 C 0.47 17.75 6.42 87.22 0.56 18.31 16 15 O -0.53 -21.70 10.57 -3.29 -0.03 -21.73 16 16 C 0.40 12.67 7.17 27.63 0.20 12.87 16 17 O -0.44 -14.18 16.50 -3.31 -0.05 -14.23 16 18 C -0.18 -4.72 5.88 -20.05 -0.12 -4.83 16 19 C -0.04 -0.87 9.60 22.58 0.22 -0.65 16 20 C -0.13 -2.13 9.81 22.25 0.22 -1.91 16 21 C 0.00 -0.03 6.33 22.45 0.14 0.12 16 22 Cl -0.05 -0.88 28.95 -2.72 -0.08 -0.96 16 23 C -0.13 -2.74 9.81 22.25 0.22 -2.52 16 24 C -0.06 -1.55 9.30 22.58 0.21 -1.34 16 25 H 0.04 1.69 5.66 -2.39 -0.01 1.68 16 26 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.04 1.66 7.85 -2.39 -0.02 1.64 16 28 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.08 4.07 5.95 -2.39 -0.01 4.06 16 30 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 31 H 0.41 15.49 8.02 -92.71 -0.74 14.74 16 32 H 0.16 2.78 7.67 -2.91 -0.02 2.76 16 33 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 34 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 35 H 0.17 4.99 4.85 -3.44 -0.02 4.97 16 Total: -1.00 -57.76 313.73 3.45 -54.31 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.40 Total: 22.80 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 3.20 Total: -3.64 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -2.00 Total: -80.00 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.09 Total: -35.96 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.96 kcal Total: -57.76 3.45 -54.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183860606.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.283 kcal (2) G-P(sol) polarization free energy of solvation -57.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds