Wall clock time and date at job start Tue Mar 31 2020 07:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47342 * 2 1 4 4 H 1.08995 * 109.47015 * 305.00020 * 3 2 1 5 5 C 1.50705 * 109.46915 * 185.00232 * 3 2 1 6 6 H 1.08004 * 119.99954 * 240.00058 * 5 3 2 7 7 C 1.37875 * 120.00246 * 59.99826 * 5 3 2 8 8 N 1.31514 * 119.99760 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00054 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47165 * 59.99960 * 9 7 5 11 11 H 1.48501 * 109.46981 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46904 * 300.00201 * 9 7 5 13 13 N 1.46496 * 109.47365 * 65.00413 * 3 2 1 14 14 C 1.34787 * 119.99648 * 275.00041 * 13 3 2 15 15 O 1.21362 * 119.99937 * 359.97438 * 14 13 3 16 16 C 1.49290 * 119.99725 * 179.97438 * 14 13 3 17 17 O 1.21365 * 120.00323 * 354.65364 * 16 14 13 18 18 C 1.47313 * 119.99504 * 174.65475 * 16 14 13 19 19 C 1.39962 * 120.16266 * 5.95574 * 18 16 14 20 20 C 1.37773 * 119.83973 * 179.74174 * 19 18 16 21 21 C 1.38622 * 120.15579 * 0.51566 * 20 19 18 22 22 Cl 1.73607 * 119.83852 * 179.73718 * 21 20 19 23 23 C 1.38624 * 120.32353 * 359.76635 * 21 20 19 24 24 C 1.37765 * 120.16301 * 359.97395 * 23 21 20 25 25 H 1.08992 * 109.47272 * 59.99503 * 1 2 3 26 26 H 1.08999 * 109.47341 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46646 * 299.99826 * 1 2 3 28 28 H 1.09003 * 109.46928 * 239.99728 * 2 1 3 29 29 H 1.09002 * 109.47319 * 120.00510 * 2 1 3 30 30 H 0.96997 * 119.99873 * 179.97438 * 8 7 5 31 31 H 0.97001 * 120.00655 * 94.99719 * 13 3 2 32 32 H 1.08000 * 120.08009 * 0.02562 * 19 18 16 33 33 H 1.07996 * 119.92148 * 180.25754 * 20 19 18 34 34 H 1.08002 * 119.91650 * 179.97438 * 23 21 20 35 35 H 1.07994 * 120.08574 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 -0.8418 5 6 3.5420 1.4441 -0.1239 6 1 4.1474 1.8886 0.6523 7 6 4.1433 0.8782 -1.2280 8 7 3.4061 0.3373 -2.1733 9 14 6.0050 0.8809 -1.3819 10 1 6.5976 0.1470 -0.2350 11 1 6.3977 0.2174 -2.6510 12 1 6.4995 2.2812 -1.3822 13 7 1.6526 2.0974 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3397 2.6327 0.4335 16 6 0.0402 3.3314 2.6428 17 8 0.7747 3.2794 3.6075 18 6 -1.2413 4.0526 2.7307 19 6 -2.1465 4.0107 1.6641 20 6 -3.3454 4.6833 1.7555 21 6 -3.6514 5.4091 2.8962 22 17 -5.1616 6.2592 2.9999 23 6 -2.7572 5.4600 3.9543 24 6 -1.5569 4.7880 3.8791 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8292 -0.0605 -2.9503 31 1 2.2721 2.1231 1.9978 32 1 -1.9077 3.4487 0.7733 33 1 -4.0466 4.6484 0.9349 34 1 -3.0022 6.0278 4.8397 35 1 -0.8610 4.8289 4.7039 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183860625.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:13 Heat of formation + Delta-G solvation = -65.488103 kcal Electronic energy + Delta-G solvation = -20855.383863 eV Core-core repulsion = 17457.975049 eV Total energy + Delta-G solvation = -3397.408814 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.85593 -40.09008 -39.35973 -37.53691 -37.06822 -34.37813 -32.81802 -32.26443 -32.12828 -29.21318 -26.97578 -25.05165 -23.98830 -23.39135 -21.65428 -21.16112 -19.34219 -18.39108 -17.91711 -17.65632 -17.02629 -16.73634 -16.36456 -15.93473 -15.47081 -15.43406 -15.08256 -14.60908 -14.55000 -14.40871 -13.82750 -13.47350 -13.31800 -13.20217 -12.95334 -12.85151 -12.66862 -12.52799 -12.39236 -12.15637 -12.10161 -11.81070 -11.58338 -11.10392 -10.57036 -10.29879 -10.16024 -9.89899 -9.81435 -8.18273 -6.35386 -0.87091 0.24258 0.50108 0.97563 1.45570 1.46408 1.54155 1.86414 2.00841 2.41810 2.63299 3.11283 3.28187 3.63094 3.76558 3.86488 4.16912 4.22363 4.49919 4.56444 4.57977 4.73130 4.94920 5.00094 5.03673 5.09434 5.14376 5.25238 5.39922 5.45108 5.56272 5.64402 5.70319 5.79919 5.93384 6.13088 6.67294 6.72914 7.15253 7.37188 8.86482 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.032074 B = 0.003217 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.781532 B = 8702.702523 C = 9055.400659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.123 4.123 3 C 0.275 3.725 4 H 0.016 0.984 5 C -0.556 4.556 6 H 0.067 0.933 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.967 3.033 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.676 5.676 14 C 0.468 3.532 15 O -0.533 6.533 16 C 0.401 3.599 17 O -0.436 6.436 18 C -0.178 4.178 19 C -0.060 4.060 20 C -0.131 4.131 21 C -0.002 4.002 22 Cl -0.055 7.055 23 C -0.125 4.125 24 C -0.042 4.042 25 H 0.037 0.963 26 H 0.047 0.953 27 H 0.041 0.959 28 H 0.077 0.923 29 H 0.037 0.963 30 H 0.267 0.733 31 H 0.406 0.594 32 H 0.167 0.833 33 H 0.155 0.845 34 H 0.168 0.832 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.922 8.934 11.222 19.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C 0.173 3.827 4 H 0.034 0.966 5 C -0.594 4.594 6 H 0.086 0.914 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.792 3.208 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.325 5.325 14 C 0.251 3.749 15 O -0.414 6.414 16 C 0.275 3.725 17 O -0.309 6.309 18 C -0.180 4.180 19 C -0.078 4.078 20 C -0.150 4.150 21 C -0.028 4.028 22 Cl -0.025 7.025 23 C -0.144 4.144 24 C -0.061 4.061 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.241 0.759 32 H 0.184 0.816 33 H 0.173 0.827 34 H 0.185 0.815 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.169 8.848 10.899 19.248 hybrid contribution 1.139 -0.127 -0.208 1.164 sum -12.030 8.721 10.690 18.305 Atomic orbital electron populations 1.21713 0.96459 0.99649 1.00565 1.21813 0.94243 0.98617 1.01540 1.18605 0.93939 0.89571 0.80618 0.96578 1.21512 0.91405 1.39559 1.06881 0.91448 1.25670 1.03082 0.94203 0.94931 1.70001 1.37036 1.37941 1.09723 0.85476 0.79350 0.78438 0.77564 1.19248 1.20922 1.19758 1.46407 1.14806 1.53125 1.18212 1.20912 0.83398 0.80929 0.89614 1.90491 1.50630 1.59575 1.40660 1.22620 0.86185 0.77081 0.86604 1.90538 1.51738 1.50475 1.38141 1.20205 0.95564 1.04218 0.97982 1.22627 0.91526 0.94751 0.98878 1.21342 0.97837 0.97743 0.98058 1.21551 0.88844 0.96205 0.96243 1.98392 1.30321 1.75622 1.98211 1.21249 0.92643 1.01207 0.99258 1.21528 0.96341 0.92072 0.96113 0.94343 0.93402 0.93976 0.90430 0.94372 0.92395 0.75864 0.81641 0.82709 0.81478 0.82661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.27 8.52 71.98 0.61 -4.66 16 2 C -0.12 -5.81 5.45 30.59 0.17 -5.64 16 3 C 0.28 13.53 2.24 44.25 0.10 13.63 16 4 H 0.02 0.92 7.58 -2.39 -0.02 0.91 16 5 C -0.56 -28.85 8.73 25.60 0.22 -28.62 16 6 H 0.07 3.35 7.74 -2.91 -0.02 3.33 16 7 C 0.02 1.16 5.29 84.65 0.45 1.61 16 8 N -0.91 -50.10 11.29 21.45 0.24 -49.86 16 9 Si 0.97 41.37 29.54 68.60 2.03 43.40 16 10 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 11 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 13 N -0.68 -27.88 5.01 -447.60 -2.24 -30.12 16 14 C 0.47 17.75 6.41 87.22 0.56 18.31 16 15 O -0.53 -21.69 10.56 -3.28 -0.03 -21.72 16 16 C 0.40 12.67 7.17 27.64 0.20 12.87 16 17 O -0.44 -14.13 16.50 -3.29 -0.05 -14.19 16 18 C -0.18 -4.73 5.88 -20.05 -0.12 -4.85 16 19 C -0.06 -1.56 9.30 22.58 0.21 -1.35 16 20 C -0.13 -2.75 9.81 22.25 0.22 -2.53 16 21 C 0.00 -0.03 6.33 22.45 0.14 0.11 16 22 Cl -0.05 -0.88 28.95 -2.72 -0.08 -0.96 16 23 C -0.13 -2.14 9.81 22.25 0.22 -1.92 16 24 C -0.04 -0.87 9.60 22.58 0.22 -0.66 16 25 H 0.04 1.68 7.85 -2.39 -0.02 1.66 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.04 1.67 5.65 -2.38 -0.01 1.66 16 28 H 0.08 4.09 5.95 -2.39 -0.01 4.07 16 29 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 30 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 31 H 0.41 15.48 8.02 -92.71 -0.74 14.74 16 32 H 0.17 5.00 4.84 -3.52 -0.02 4.98 16 33 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 34 H 0.17 1.88 8.06 -2.91 -0.02 1.85 16 35 H 0.16 2.79 7.67 -2.91 -0.02 2.77 16 Total: -1.00 -57.69 313.70 3.45 -54.24 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.39 Total: 22.92 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 3.19 Total: -3.70 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -2.00 Total: -79.98 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -0.09 Total: -35.91 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.96 kcal Total: -57.69 3.45 -54.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183860625.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.248 kcal (2) G-P(sol) polarization free energy of solvation -57.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds