Wall clock time and date at job start Tue Mar 31 2020 06:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86808 * 119.99695 * 2 1 4 4 H 1.48501 * 109.46780 * 269.99262 * 3 2 1 5 5 H 1.48497 * 109.47173 * 29.99319 * 3 2 1 6 6 H 1.48503 * 109.47139 * 149.99930 * 3 2 1 7 7 C 1.40045 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99992 * 180.02562 * 7 2 1 9 9 C 1.46368 * 119.99878 * 0.02562 * 7 2 1 10 10 O 1.21686 * 120.00282 * 0.27411 * 9 7 2 11 11 N 1.34784 * 119.99821 * 180.02562 * 9 7 2 12 12 C 1.46499 * 119.99971 * 180.02562 * 11 9 7 13 13 H 1.09006 * 110.45530 * 34.29869 * 12 11 9 14 14 C 1.54510 * 110.51026 * 271.69595 * 12 11 9 15 15 C 1.54803 * 103.91012 * 241.38458 * 14 12 11 16 16 O 1.44421 * 104.80177 * 335.92019 * 15 14 12 17 17 C 1.44425 * 105.27837 * 40.58373 * 16 15 14 18 18 H 1.09002 * 110.37118 * 78.31959 * 17 16 15 19 19 C 1.50703 * 110.37374 * 200.65416 * 17 16 15 20 20 C 1.38245 * 119.98220 * 35.11230 * 19 17 16 21 21 C 1.38219 * 120.00990 * 179.72501 * 20 19 17 22 22 C 1.38356 * 119.98412 * 0.54192 * 21 20 19 23 23 Cl 1.73603 * 120.01150 * 179.74972 * 22 21 20 24 24 C 1.38346 * 119.97326 * 359.73077 * 22 21 20 25 25 C 1.38216 * 119.99002 * 359.97438 * 24 22 21 26 26 H 0.97000 * 120.00448 * 0.02562 * 1 2 3 27 27 H 0.96999 * 120.00044 * 0.02562 * 11 9 7 28 28 H 1.08998 * 110.51436 * 359.97438 * 14 12 11 29 29 H 1.09002 * 110.51278 * 122.70944 * 14 12 11 30 30 H 1.08995 * 110.30803 * 217.11634 * 15 14 12 31 31 H 1.09003 * 110.52409 * 94.83010 * 15 14 12 32 32 H 1.08000 * 119.99352 * 359.97438 * 20 19 17 33 33 H 1.07993 * 120.00782 * 180.27030 * 21 20 19 34 34 H 1.08002 * 120.00793 * 180.02562 * 24 22 21 35 35 H 1.08003 * 119.99291 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4380 2.6528 0.6999 6 1 3.5382 1.4404 0.7001 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2751 -2.4804 0.0005 10 8 0.0583 -2.4805 -0.0050 11 7 1.9491 -3.6476 0.0016 12 6 1.2167 -4.9164 0.0010 13 1 0.2962 -4.8246 -0.5756 14 6 0.9072 -5.3635 1.4473 15 6 1.6443 -6.7179 1.5838 16 8 1.7677 -7.2089 0.2313 17 6 2.0992 -6.0507 -0.5653 18 1 3.1546 -5.8023 -0.4528 19 6 1.7690 -6.2986 -2.0146 20 6 0.6647 -7.0591 -2.3512 21 6 0.3580 -7.2821 -3.6804 22 6 1.1629 -6.7535 -4.6738 23 17 0.7821 -7.0386 -6.3434 24 6 2.2711 -5.9973 -4.3362 25 6 2.5733 -5.7698 -3.0068 26 1 -0.4851 0.8400 -0.0004 27 1 2.9191 -3.6476 0.0027 28 1 1.2996 -4.6408 2.1627 29 1 -0.1660 -5.4951 1.5850 30 1 1.0559 -7.4097 2.1865 31 1 2.6299 -6.5737 2.0266 32 1 0.0392 -7.4756 -1.5755 33 1 -0.5072 -7.8725 -3.9433 34 1 2.8995 -5.5840 -5.1112 35 1 3.4382 -5.1791 -2.7431 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186133335.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:50 Heat of formation + Delta-G solvation = -68.311451 kcal Electronic energy + Delta-G solvation = -21121.432499 eV Core-core repulsion = 17723.901256 eV Total energy + Delta-G solvation = -3397.531243 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.11142 -38.58387 -36.96495 -36.43520 -33.46022 -32.37178 -31.72085 -31.03267 -30.06716 -27.49004 -25.93668 -23.39974 -22.67543 -21.58783 -20.76071 -19.48616 -17.55890 -17.15499 -16.20683 -15.99586 -15.62344 -15.33436 -14.71151 -14.33831 -14.01965 -13.75627 -13.51715 -13.44999 -13.30414 -12.72960 -12.52997 -12.33598 -11.79808 -11.55133 -11.43183 -11.21169 -11.14677 -10.95238 -10.83536 -10.79418 -10.51670 -10.42958 -10.26708 -9.75074 -8.99391 -8.90839 -8.55832 -7.70032 -7.61356 -6.24048 -4.70291 1.12871 1.34443 2.11277 3.10763 3.17893 3.20775 3.57859 3.92167 4.09396 4.50356 4.71750 4.80140 4.80380 4.90322 5.04351 5.24266 5.25862 5.30151 5.40911 5.48749 5.60325 5.69794 5.76917 5.92714 5.98412 6.09414 6.22808 6.24932 6.41917 6.50509 6.54707 6.80856 6.91544 7.38106 7.81715 7.99263 8.25170 8.97131 9.43301 10.53816 10.71843 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.013621 B = 0.004571 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.133317 B = 6124.276639 C = 7562.101831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.556 3.444 10 O -0.577 6.577 11 N -0.757 5.757 12 C 0.139 3.861 13 H 0.092 0.908 14 C -0.166 4.166 15 C 0.045 3.955 16 O -0.368 6.368 17 C 0.108 3.892 18 H 0.081 0.919 19 C -0.067 4.067 20 C -0.082 4.082 21 C -0.114 4.114 22 C -0.035 4.035 23 Cl -0.080 7.080 24 C -0.111 4.111 25 C -0.090 4.090 26 H 0.269 0.731 27 H 0.380 0.620 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.175 -13.328 -4.242 14.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.360 3.640 10 O -0.459 6.459 11 N -0.412 5.412 12 C 0.031 3.969 13 H 0.110 0.890 14 C -0.205 4.205 15 C -0.032 4.032 16 O -0.287 6.287 17 C 0.049 3.951 18 H 0.098 0.902 19 C -0.067 4.067 20 C -0.101 4.101 21 C -0.132 4.132 22 C -0.062 4.062 23 Cl -0.051 7.051 24 C -0.129 4.129 25 C -0.108 4.108 26 H 0.079 0.921 27 H 0.212 0.788 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.016 -13.458 -4.471 14.739 hybrid contribution 0.882 1.045 -0.024 1.368 sum 4.898 -12.413 -4.495 14.081 Atomic orbital electron populations 1.70010 1.07058 1.27347 1.35083 1.25693 0.94603 1.00277 0.92592 0.86387 0.80151 0.81440 0.78878 1.19715 1.20439 1.18907 1.20857 0.93559 0.89297 1.54466 0.91426 1.18230 0.87250 0.82272 0.76253 1.90610 1.14039 1.86607 1.54641 1.46198 1.08262 1.04242 1.82535 1.21801 0.96196 0.84570 0.94319 0.89026 1.23471 1.01468 0.96576 0.99022 1.23494 0.99736 0.95720 0.84224 1.89108 1.91443 1.29679 1.18454 1.22062 0.98934 0.86234 0.87837 0.90163 1.19674 0.95492 0.97567 0.93961 1.20966 0.96492 0.97133 0.95466 1.21022 0.99599 1.00762 0.91858 1.20922 0.98046 1.02314 0.84888 1.98354 1.94135 1.95248 1.17345 1.20962 0.96506 0.98607 0.96845 1.20916 0.99688 0.98781 0.91446 0.92051 0.78840 0.89780 0.90613 0.89253 0.92317 0.84581 0.85014 0.84882 0.84816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.59 11.83 55.55 0.66 -21.93 16 2 C 0.09 2.41 5.50 -17.37 -0.10 2.31 16 3 Si 0.91 19.71 29.56 -169.99 -5.02 14.68 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.54 -14.86 9.54 -35.64 -0.34 -15.20 16 8 H 0.07 1.68 7.85 -52.49 -0.41 1.27 16 9 C 0.56 15.13 7.75 -12.99 -0.10 15.03 16 10 O -0.58 -18.09 14.70 5.20 0.08 -18.02 16 11 N -0.76 -15.80 5.06 -53.69 -0.27 -16.07 16 12 C 0.14 2.54 2.97 -66.37 -0.20 2.35 16 13 H 0.09 1.98 7.32 -51.93 -0.38 1.60 16 14 C -0.17 -2.70 6.90 -24.99 -0.17 -2.87 16 15 C 0.04 0.58 7.64 38.11 0.29 0.87 16 16 O -0.37 -5.37 10.55 -35.23 -0.37 -5.74 16 17 C 0.11 1.61 3.21 -27.11 -0.09 1.52 16 18 H 0.08 1.09 7.68 -51.93 -0.40 0.69 16 19 C -0.07 -0.98 4.92 -104.62 -0.52 -1.50 16 20 C -0.08 -1.16 9.37 -39.59 -0.37 -1.53 16 21 C -0.11 -1.48 9.83 -39.54 -0.39 -1.87 16 22 C -0.04 -0.47 6.32 -39.50 -0.25 -0.71 16 23 Cl -0.08 -0.95 28.96 -51.86 -1.50 -2.45 16 24 C -0.11 -1.44 9.83 -39.55 -0.39 -1.83 16 25 C -0.09 -1.23 9.69 -39.59 -0.38 -1.62 16 26 H 0.27 7.20 8.29 -40.82 -0.34 6.87 16 27 H 0.38 6.87 8.35 -40.82 -0.34 6.53 16 28 H 0.08 1.46 7.96 -51.93 -0.41 1.05 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.14 1.81 7.67 -52.49 -0.40 1.41 16 33 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.13 1.62 8.06 -52.48 -0.42 1.19 16 LS Contribution 319.15 15.07 4.81 4.81 Total: -1.00 -32.94 319.15 -8.64 -41.59 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -4.02 Total: 8.19 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -3.00 Total: -5.06 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.39 Total: -38.00 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.30 Total: -23.76 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.68 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.50 Total: -2.45 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.94 -8.64 -41.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186133335.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.724 kcal (2) G-P(sol) polarization free energy of solvation -32.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds