Wall clock time and date at job start Tue Mar 31 2020 06:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86808 * 119.99695 * 2 1 4 4 H 1.48501 * 109.46780 * 269.99262 * 3 2 1 5 5 H 1.48497 * 109.47173 * 29.99319 * 3 2 1 6 6 H 1.48503 * 109.47139 * 149.99930 * 3 2 1 7 7 C 1.40045 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99992 * 180.02562 * 7 2 1 9 9 C 1.46368 * 119.99878 * 0.02562 * 7 2 1 10 10 O 1.21686 * 120.00282 * 0.27411 * 9 7 2 11 11 N 1.34784 * 119.99821 * 180.02562 * 9 7 2 12 12 C 1.46499 * 119.99971 * 180.02562 * 11 9 7 13 13 H 1.09006 * 110.45530 * 34.29869 * 12 11 9 14 14 C 1.54510 * 110.51026 * 271.69595 * 12 11 9 15 15 C 1.54803 * 103.91012 * 241.38458 * 14 12 11 16 16 O 1.44421 * 104.80177 * 335.92019 * 15 14 12 17 17 C 1.44425 * 105.27837 * 40.58373 * 16 15 14 18 18 H 1.09002 * 110.37118 * 78.31959 * 17 16 15 19 19 C 1.50703 * 110.37374 * 200.65416 * 17 16 15 20 20 C 1.38245 * 119.98220 * 35.11230 * 19 17 16 21 21 C 1.38219 * 120.00990 * 179.72501 * 20 19 17 22 22 C 1.38356 * 119.98412 * 0.54192 * 21 20 19 23 23 Cl 1.73603 * 120.01150 * 179.74972 * 22 21 20 24 24 C 1.38346 * 119.97326 * 359.73077 * 22 21 20 25 25 C 1.38216 * 119.99002 * 359.97438 * 24 22 21 26 26 H 0.97000 * 120.00448 * 0.02562 * 1 2 3 27 27 H 0.96999 * 120.00044 * 0.02562 * 11 9 7 28 28 H 1.08998 * 110.51436 * 359.97438 * 14 12 11 29 29 H 1.09002 * 110.51278 * 122.70944 * 14 12 11 30 30 H 1.08995 * 110.30803 * 217.11634 * 15 14 12 31 31 H 1.09003 * 110.52409 * 94.83010 * 15 14 12 32 32 H 1.08000 * 119.99352 * 359.97438 * 20 19 17 33 33 H 1.07993 * 120.00782 * 180.27030 * 21 20 19 34 34 H 1.08002 * 120.00793 * 180.02562 * 24 22 21 35 35 H 1.08003 * 119.99291 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4380 2.6528 0.6999 6 1 3.5382 1.4404 0.7001 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2751 -2.4804 0.0005 10 8 0.0583 -2.4805 -0.0050 11 7 1.9491 -3.6476 0.0016 12 6 1.2167 -4.9164 0.0010 13 1 0.2962 -4.8246 -0.5756 14 6 0.9072 -5.3635 1.4473 15 6 1.6443 -6.7179 1.5838 16 8 1.7677 -7.2089 0.2313 17 6 2.0992 -6.0507 -0.5653 18 1 3.1546 -5.8023 -0.4528 19 6 1.7690 -6.2986 -2.0146 20 6 0.6647 -7.0591 -2.3512 21 6 0.3580 -7.2821 -3.6804 22 6 1.1629 -6.7535 -4.6738 23 17 0.7821 -7.0386 -6.3434 24 6 2.2711 -5.9973 -4.3362 25 6 2.5733 -5.7698 -3.0068 26 1 -0.4851 0.8400 -0.0004 27 1 2.9191 -3.6476 0.0027 28 1 1.2996 -4.6408 2.1627 29 1 -0.1660 -5.4951 1.5850 30 1 1.0559 -7.4097 2.1865 31 1 2.6299 -6.5737 2.0266 32 1 0.0392 -7.4756 -1.5755 33 1 -0.5072 -7.8725 -3.9433 34 1 2.8995 -5.5840 -5.1112 35 1 3.4382 -5.1791 -2.7431 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186133335.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:50 Heat of formation + Delta-G solvation = -90.155480 kcal Electronic energy + Delta-G solvation = -21122.379727 eV Core-core repulsion = 17723.901256 eV Total energy + Delta-G solvation = -3398.478472 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.33349 -39.77369 -38.84049 -37.43699 -35.21410 -34.41343 -32.85315 -32.06846 -31.58902 -28.96362 -27.72761 -24.56981 -23.78395 -22.98356 -22.07821 -21.24567 -19.29935 -18.39033 -17.56981 -17.43129 -17.10069 -16.78444 -15.93684 -15.76107 -15.36188 -15.28682 -14.75354 -14.60843 -14.44942 -14.29834 -14.20284 -13.81979 -13.26108 -12.97860 -12.77495 -12.62644 -12.58194 -12.48294 -12.24865 -12.15156 -12.00759 -11.81685 -11.77455 -10.92848 -10.87886 -10.03455 -9.86472 -9.73656 -9.37951 -8.28437 -6.84560 0.05405 0.30195 1.09788 1.41303 1.42132 1.57315 2.23988 2.47100 2.50228 2.72746 3.22992 3.50961 3.62403 3.74935 3.83135 3.93847 4.00466 4.10050 4.16583 4.31243 4.36942 4.48136 4.66813 4.76736 4.84580 4.97196 5.01107 5.07447 5.18681 5.20287 5.33168 5.44299 5.71860 5.76964 5.88822 6.22409 6.27559 6.88289 7.54224 8.50538 8.68460 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.013621 B = 0.004571 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.133317 B = 6124.276639 C = 7562.101831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.031 3.969 3 Si 0.994 3.006 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.247 1.247 7 C -0.571 4.571 8 H 0.090 0.910 9 C 0.543 3.457 10 O -0.629 6.629 11 N -0.741 5.741 12 C 0.135 3.865 13 H 0.051 0.949 14 C -0.166 4.166 15 C 0.054 3.946 16 O -0.371 6.371 17 C 0.123 3.877 18 H 0.101 0.899 19 C -0.088 4.088 20 C -0.094 4.094 21 C -0.118 4.118 22 C -0.043 4.043 23 Cl -0.069 7.069 24 C -0.115 4.115 25 C -0.098 4.098 26 H 0.273 0.727 27 H 0.396 0.604 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.138 0.862 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.394 -13.553 -4.400 16.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.185 4.185 3 Si 0.814 3.186 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.170 1.170 7 C -0.607 4.607 8 H 0.108 0.892 9 C 0.347 3.653 10 O -0.516 6.516 11 N -0.396 5.396 12 C 0.028 3.972 13 H 0.070 0.930 14 C -0.205 4.205 15 C -0.022 4.022 16 O -0.290 6.290 17 C 0.065 3.935 18 H 0.118 0.882 19 C -0.089 4.089 20 C -0.112 4.112 21 C -0.136 4.136 22 C -0.070 4.070 23 Cl -0.040 7.040 24 C -0.133 4.133 25 C -0.116 4.116 26 H 0.083 0.917 27 H 0.231 0.769 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.133 0.867 31 H 0.099 0.901 32 H 0.155 0.845 33 H 0.167 0.833 34 H 0.170 0.830 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.286 -13.742 -4.627 15.804 hybrid contribution 0.150 1.029 -0.013 1.040 sum 6.436 -12.713 -4.640 14.986 Atomic orbital electron populations 1.70187 1.09533 1.28843 1.36609 1.26924 0.95429 1.04863 0.91241 0.85068 0.78892 0.75319 0.79336 1.18799 1.20071 1.17009 1.21416 0.94787 0.89926 1.54588 0.89237 1.18553 0.86795 0.84144 0.75819 1.90568 1.16298 1.87780 1.56969 1.45745 1.08974 1.03833 1.81025 1.21849 0.95252 0.84597 0.95541 0.93044 1.23395 1.01453 0.98527 0.97171 1.23589 1.00801 0.93900 0.83894 1.89118 1.91492 1.29248 1.19118 1.21892 0.98918 0.84802 0.87935 0.88187 1.19828 0.96342 0.98587 0.94098 1.21098 0.96567 0.97456 0.96121 1.21242 1.00124 1.00735 0.91499 1.21098 0.98137 1.02198 0.85548 1.98356 1.94071 1.95169 1.16376 1.21234 0.96658 0.98284 0.97146 1.21156 1.00116 0.98773 0.91600 0.91692 0.76934 0.91012 0.91604 0.86700 0.90099 0.84459 0.83268 0.82978 0.83336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.80 11.83 21.83 0.26 -49.55 16 2 C 0.03 1.67 5.50 85.30 0.47 2.14 16 3 Si 0.99 40.04 29.56 68.60 2.03 42.07 16 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 7 C -0.57 -31.21 9.54 24.83 0.24 -30.98 16 8 H 0.09 4.33 7.85 -2.91 -0.02 4.31 16 9 C 0.54 30.31 7.75 86.36 0.67 30.98 16 10 O -0.63 -41.34 14.70 -4.30 -0.06 -41.41 16 11 N -0.74 -31.16 5.06 -442.00 -2.23 -33.40 16 12 C 0.13 5.01 2.97 46.01 0.14 5.15 16 13 H 0.05 2.34 7.32 -2.38 -0.02 2.32 16 14 C -0.17 -5.43 6.90 31.72 0.22 -5.21 16 15 C 0.05 1.29 7.64 72.60 0.55 1.85 16 16 O -0.37 -10.16 10.55 -148.98 -1.57 -11.73 16 17 C 0.12 3.54 3.21 30.35 0.10 3.64 16 18 H 0.10 2.49 7.68 -2.39 -0.02 2.47 16 19 C -0.09 -2.56 4.92 -19.86 -0.10 -2.65 16 20 C -0.09 -2.64 9.37 22.27 0.21 -2.43 16 21 C -0.12 -2.99 9.83 22.29 0.22 -2.77 16 22 C -0.04 -1.10 6.32 22.32 0.14 -0.96 16 23 Cl -0.07 -1.55 28.96 -2.72 -0.08 -1.63 16 24 C -0.11 -2.84 9.83 22.29 0.22 -2.62 16 25 C -0.10 -2.59 9.69 22.26 0.22 -2.37 16 26 H 0.27 15.06 8.29 -92.71 -0.77 14.29 16 27 H 0.40 13.95 8.35 -92.71 -0.77 13.18 16 28 H 0.07 2.51 7.96 -2.39 -0.02 2.49 16 29 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.14 3.68 7.67 -2.91 -0.02 3.66 16 33 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 34 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 35 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -73.69 319.15 1.98 -71.72 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.35 Total: 30.18 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 3.29 Total: -6.24 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -1.98 Total: -82.95 kcal Atomic # 8 Polarization: -51.51 SS G_CDS: -1.64 Total: -53.14 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -73.69 1.98 -71.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186133335.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.437 kcal (2) G-P(sol) polarization free energy of solvation -73.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds