Wall clock time and date at job start Tue Mar 31 2020 06:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86803 * 119.99942 * 2 1 4 4 H 1.48506 * 109.47257 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46768 * 299.99486 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99737 * 3 2 1 7 7 C 1.40050 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00087 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00147 * 179.97438 * 9 7 2 12 12 C 1.46498 * 119.99828 * 180.27610 * 11 9 7 13 13 H 1.09004 * 110.43745 * 325.42153 * 12 11 9 14 14 C 1.54812 * 110.48938 * 87.96913 * 12 11 9 15 15 C 1.55346 * 101.93411 * 97.82185 * 14 12 11 16 16 O 1.44385 * 103.49995 * 37.05104 * 15 14 12 17 17 C 1.43743 * 106.97772 * 319.90985 * 16 15 14 18 18 H 1.08998 * 110.00171 * 267.01950 * 17 16 15 19 19 C 1.50702 * 109.87999 * 145.93728 * 17 16 15 20 20 C 1.38239 * 119.98594 * 326.89551 * 19 17 16 21 21 C 1.38214 * 120.01354 * 179.72662 * 20 19 17 22 22 C 1.38351 * 119.98317 * 0.54494 * 21 20 19 23 23 Cl 1.73600 * 120.01267 * 179.74839 * 22 21 20 24 24 C 1.38357 * 119.97463 * 359.72896 * 22 21 20 25 25 C 1.38211 * 119.98616 * 359.97438 * 24 22 21 26 26 H 0.96996 * 120.00325 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 28 28 H 1.09002 * 110.90322 * 215.99501 * 14 12 11 29 29 H 1.09000 * 110.90578 * 339.59325 * 14 12 11 30 30 H 1.08995 * 110.63945 * 278.53530 * 15 14 12 31 31 H 1.08997 * 110.71706 * 155.60746 * 15 14 12 32 32 H 1.07999 * 119.99342 * 359.97438 * 20 19 17 33 33 H 1.08003 * 120.01144 * 180.26932 * 21 20 19 34 34 H 1.08000 * 120.00662 * 180.02562 * 24 22 21 35 35 H 1.08002 * 119.99408 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8819 2.3964 -1.2126 6 1 1.8819 2.3965 1.2124 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2128 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2165 -4.9164 -0.0056 13 1 0.2955 -4.8269 0.5705 14 6 0.9071 -5.3565 -1.4572 15 6 2.0513 -6.3694 -1.7366 16 8 2.2185 -7.0462 -0.4722 17 6 2.0963 -6.0498 0.5566 18 1 3.0804 -5.6605 0.8174 19 6 1.4431 -6.6491 1.7753 20 6 0.4894 -7.6395 1.6316 21 6 -0.1059 -8.1935 2.7491 22 6 0.2447 -7.7487 4.0114 23 17 -0.5074 -8.4394 5.4154 24 6 1.1951 -6.7535 4.1544 25 6 1.7942 -6.2046 3.0364 26 1 -0.4850 0.8400 -0.0004 27 1 2.9190 -3.6476 0.0002 28 1 -0.0669 -5.8422 -1.5171 29 1 0.9602 -4.5088 -2.1403 30 1 2.9664 -5.8476 -2.0166 31 1 1.7600 -7.0753 -2.5143 32 1 0.2124 -7.9832 0.6459 33 1 -0.8479 -8.9702 2.6369 34 1 1.4695 -6.4062 5.1396 35 1 2.5364 -5.4281 3.1479 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186133353.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:53 Heat of formation + Delta-G solvation = -68.404104 kcal Electronic energy + Delta-G solvation = -21067.214516 eV Core-core repulsion = 17669.679255 eV Total energy + Delta-G solvation = -3397.535261 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.17428 -38.60422 -36.95389 -36.45734 -33.43955 -32.38042 -31.74203 -31.05277 -30.08320 -27.53484 -25.96730 -23.30587 -22.70366 -21.70851 -20.73819 -19.50518 -17.58557 -17.15943 -16.18309 -16.03932 -15.64715 -15.31339 -14.75222 -14.29200 -14.03806 -13.90388 -13.50205 -13.47093 -13.42962 -12.63412 -12.40078 -12.32835 -11.77686 -11.57461 -11.48685 -11.22597 -11.14128 -10.93164 -10.85040 -10.79864 -10.62291 -10.51798 -10.24310 -9.68839 -9.02994 -8.92909 -8.58424 -7.71692 -7.62744 -6.25462 -4.71655 1.09978 1.31048 2.08102 3.08816 3.17445 3.21410 3.55605 3.93406 4.07997 4.48570 4.66267 4.74156 4.82589 4.87672 5.03041 5.21901 5.28139 5.31360 5.39269 5.49046 5.62135 5.67704 5.77130 5.93332 5.96446 6.12503 6.20207 6.21382 6.39734 6.51097 6.54099 6.78152 6.95710 7.37129 7.80365 7.97680 8.24170 8.95966 9.41496 10.52169 10.70177 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.016720 B = 0.004028 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.209495 B = 6949.297911 C = 8033.067074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.555 3.445 10 O -0.577 6.577 11 N -0.758 5.758 12 C 0.137 3.863 13 H 0.093 0.907 14 C -0.164 4.164 15 C 0.046 3.954 16 O -0.371 6.371 17 C 0.109 3.891 18 H 0.083 0.917 19 C -0.071 4.071 20 C -0.083 4.083 21 C -0.114 4.114 22 C -0.036 4.036 23 Cl -0.080 7.080 24 C -0.110 4.110 25 C -0.092 4.092 26 H 0.268 0.732 27 H 0.380 0.620 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.866 -14.209 3.599 15.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.459 6.459 11 N -0.413 5.413 12 C 0.029 3.971 13 H 0.111 0.889 14 C -0.204 4.204 15 C -0.030 4.030 16 O -0.290 6.290 17 C 0.051 3.949 18 H 0.100 0.900 19 C -0.072 4.072 20 C -0.101 4.101 21 C -0.133 4.133 22 C -0.063 4.063 23 Cl -0.051 7.051 24 C -0.129 4.129 25 C -0.111 4.111 26 H 0.079 0.921 27 H 0.212 0.788 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.748 -14.374 3.768 15.112 hybrid contribution 0.782 1.005 0.068 1.275 sum 3.530 -13.369 3.835 14.349 Atomic orbital electron populations 1.70018 1.07060 1.27266 1.35116 1.25701 0.94611 1.00311 0.92587 0.86327 0.80487 0.81752 0.78269 1.18761 1.20149 1.20127 1.20902 0.93612 0.89274 1.54368 0.91358 1.18249 0.87260 0.82281 0.76296 1.90615 1.14017 1.86636 1.54631 1.46265 1.08309 1.04243 1.82518 1.21778 0.96145 0.84497 0.94667 0.88903 1.23627 0.98440 0.99629 0.98656 1.23655 0.98003 0.95017 0.86340 1.88853 1.93421 1.31775 1.14977 1.21894 0.98343 0.88159 0.86515 0.89965 1.19863 0.96780 0.96561 0.93962 1.20955 0.95017 0.95434 0.98707 1.21025 1.00805 1.00942 0.90509 1.20928 0.98655 0.98716 0.87993 1.98355 1.81423 1.84047 1.41260 1.20975 0.96244 0.95971 0.99707 1.20955 0.99891 0.99245 0.90972 0.92091 0.78784 0.90710 0.89357 0.92057 0.89202 0.84607 0.85036 0.84884 0.84737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.45 11.83 55.55 0.66 -21.80 16 2 C 0.09 2.39 5.50 -17.37 -0.10 2.29 16 3 Si 0.91 19.62 29.56 -169.99 -5.02 14.59 16 4 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.54 -14.80 9.54 -35.63 -0.34 -15.14 16 8 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 9 C 0.55 15.01 7.75 -12.99 -0.10 14.91 16 10 O -0.58 -17.98 14.70 5.20 0.08 -17.90 16 11 N -0.76 -15.77 5.09 -53.73 -0.27 -16.04 16 12 C 0.14 2.48 2.98 -66.40 -0.20 2.29 16 13 H 0.09 1.98 7.16 -51.93 -0.37 1.61 16 14 C -0.16 -2.66 6.91 -24.53 -0.17 -2.83 16 15 C 0.05 0.61 7.73 38.40 0.30 0.91 16 16 O -0.37 -5.38 10.29 -35.23 -0.36 -5.74 16 17 C 0.11 1.63 3.42 -27.31 -0.09 1.54 16 18 H 0.08 1.16 7.55 -51.93 -0.39 0.77 16 19 C -0.07 -1.03 4.80 -104.62 -0.50 -1.53 16 20 C -0.08 -1.12 9.36 -39.59 -0.37 -1.49 16 21 C -0.11 -1.42 9.83 -39.55 -0.39 -1.81 16 22 C -0.04 -0.46 6.32 -39.50 -0.25 -0.71 16 23 Cl -0.08 -0.92 28.96 -51.86 -1.50 -2.42 16 24 C -0.11 -1.40 9.83 -39.55 -0.39 -1.79 16 25 C -0.09 -1.26 9.69 -39.59 -0.38 -1.64 16 26 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 27 H 0.38 6.91 8.29 -40.82 -0.34 6.58 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.09 1.61 8.06 -51.93 -0.42 1.19 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.14 1.71 7.59 -52.49 -0.40 1.31 16 33 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 34 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 318.79 15.07 4.80 4.80 Total: -1.00 -32.56 318.79 -8.61 -41.17 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -4.00 Total: 8.35 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -2.98 Total: -5.01 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.38 Total: -37.84 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.29 Total: -23.65 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.59 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.42 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.56 -8.61 -41.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186133353.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.237 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds