Wall clock time and date at job start Tue Mar 31 2020 06:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86803 * 119.99942 * 2 1 4 4 H 1.48506 * 109.47257 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46768 * 299.99486 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99737 * 3 2 1 7 7 C 1.40050 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00087 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00147 * 179.97438 * 9 7 2 12 12 C 1.46498 * 119.99828 * 180.27610 * 11 9 7 13 13 H 1.09004 * 110.43745 * 325.42153 * 12 11 9 14 14 C 1.54812 * 110.48938 * 87.96913 * 12 11 9 15 15 C 1.55346 * 101.93411 * 97.82185 * 14 12 11 16 16 O 1.44385 * 103.49995 * 37.05104 * 15 14 12 17 17 C 1.43743 * 106.97772 * 319.90985 * 16 15 14 18 18 H 1.08998 * 110.00171 * 267.01950 * 17 16 15 19 19 C 1.50702 * 109.87999 * 145.93728 * 17 16 15 20 20 C 1.38239 * 119.98594 * 326.89551 * 19 17 16 21 21 C 1.38214 * 120.01354 * 179.72662 * 20 19 17 22 22 C 1.38351 * 119.98317 * 0.54494 * 21 20 19 23 23 Cl 1.73600 * 120.01267 * 179.74839 * 22 21 20 24 24 C 1.38357 * 119.97463 * 359.72896 * 22 21 20 25 25 C 1.38211 * 119.98616 * 359.97438 * 24 22 21 26 26 H 0.96996 * 120.00325 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 28 28 H 1.09002 * 110.90322 * 215.99501 * 14 12 11 29 29 H 1.09000 * 110.90578 * 339.59325 * 14 12 11 30 30 H 1.08995 * 110.63945 * 278.53530 * 15 14 12 31 31 H 1.08997 * 110.71706 * 155.60746 * 15 14 12 32 32 H 1.07999 * 119.99342 * 359.97438 * 20 19 17 33 33 H 1.08003 * 120.01144 * 180.26932 * 21 20 19 34 34 H 1.08000 * 120.00662 * 180.02562 * 24 22 21 35 35 H 1.08002 * 119.99408 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8819 2.3964 -1.2126 6 1 1.8819 2.3965 1.2124 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2128 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2165 -4.9164 -0.0056 13 1 0.2955 -4.8269 0.5705 14 6 0.9071 -5.3565 -1.4572 15 6 2.0513 -6.3694 -1.7366 16 8 2.2185 -7.0462 -0.4722 17 6 2.0963 -6.0498 0.5566 18 1 3.0804 -5.6605 0.8174 19 6 1.4431 -6.6491 1.7753 20 6 0.4894 -7.6395 1.6316 21 6 -0.1059 -8.1935 2.7491 22 6 0.2447 -7.7487 4.0114 23 17 -0.5074 -8.4394 5.4154 24 6 1.1951 -6.7535 4.1544 25 6 1.7942 -6.2046 3.0364 26 1 -0.4850 0.8400 -0.0004 27 1 2.9190 -3.6476 0.0002 28 1 -0.0669 -5.8422 -1.5171 29 1 0.9602 -4.5088 -2.1403 30 1 2.9664 -5.8476 -2.0166 31 1 1.7600 -7.0753 -2.5143 32 1 0.2124 -7.9832 0.6459 33 1 -0.8479 -8.9702 2.6369 34 1 1.4695 -6.4062 5.1396 35 1 2.5364 -5.4281 3.1479 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186133353.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:52 Heat of formation + Delta-G solvation = -89.800045 kcal Electronic energy + Delta-G solvation = -21068.142314 eV Core-core repulsion = 17669.679255 eV Total energy + Delta-G solvation = -3398.463059 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.39482 -39.78894 -38.81466 -37.43157 -35.18977 -34.40858 -32.86528 -32.06172 -31.60435 -28.98864 -27.76918 -24.44889 -23.81906 -23.09687 -22.03032 -21.27414 -19.30135 -18.40071 -17.52432 -17.47976 -17.13472 -16.74474 -15.88500 -15.80537 -15.48404 -15.31536 -14.81511 -14.55054 -14.45612 -14.29206 -14.19890 -13.66414 -13.20649 -12.96860 -12.79461 -12.65216 -12.58721 -12.50548 -12.22042 -12.15614 -11.98564 -11.93710 -11.80023 -10.94873 -10.82776 -10.04075 -9.86714 -9.74716 -9.38740 -8.29240 -6.85426 0.05111 0.29679 1.09857 1.40378 1.41316 1.58491 2.23752 2.46364 2.49984 2.74102 3.17351 3.45471 3.63401 3.74389 3.81097 3.93098 4.01849 4.03653 4.21957 4.33028 4.36560 4.49997 4.66674 4.77543 4.86887 4.97221 4.98606 5.05030 5.18913 5.20462 5.32814 5.46444 5.75572 5.77235 5.87534 6.21017 6.26526 6.87636 7.52141 8.49304 8.67459 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.016720 B = 0.004028 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.209495 B = 6949.297911 C = 8033.067074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.030 3.970 3 Si 0.995 3.005 4 H -0.246 1.246 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.571 4.571 8 H 0.089 0.911 9 C 0.543 3.457 10 O -0.628 6.628 11 N -0.743 5.743 12 C 0.133 3.867 13 H 0.056 0.944 14 C -0.164 4.164 15 C 0.056 3.944 16 O -0.370 6.370 17 C 0.124 3.876 18 H 0.093 0.907 19 C -0.091 4.091 20 C -0.091 4.091 21 C -0.115 4.115 22 C -0.043 4.043 23 Cl -0.068 7.068 24 C -0.115 4.115 25 C -0.103 4.103 26 H 0.274 0.726 27 H 0.395 0.605 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.121 0.879 32 H 0.142 0.858 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.621 -14.703 3.705 16.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.185 4.185 3 Si 0.815 3.185 4 H -0.169 1.169 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.607 4.607 8 H 0.107 0.893 9 C 0.347 3.653 10 O -0.515 6.515 11 N -0.398 5.398 12 C 0.027 3.973 13 H 0.074 0.926 14 C -0.203 4.203 15 C -0.020 4.020 16 O -0.289 6.289 17 C 0.066 3.934 18 H 0.111 0.889 19 C -0.092 4.092 20 C -0.109 4.109 21 C -0.133 4.133 22 C -0.070 4.070 23 Cl -0.039 7.039 24 C -0.133 4.133 25 C -0.122 4.122 26 H 0.083 0.917 27 H 0.230 0.770 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.138 0.862 32 H 0.160 0.840 33 H 0.170 0.830 34 H 0.168 0.832 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.555 -14.926 3.872 16.078 hybrid contribution 0.188 1.060 0.068 1.079 sum 4.743 -13.866 3.940 15.175 Atomic orbital electron populations 1.70185 1.09499 1.28819 1.36560 1.26923 0.95450 1.04855 0.91248 0.85011 0.79478 0.75649 0.78412 1.16872 1.19515 1.19563 1.21447 0.94764 0.89959 1.54563 0.89339 1.18550 0.86804 0.84103 0.75847 1.90572 1.16210 1.87786 1.56933 1.45837 1.08963 1.03920 1.81043 1.21832 0.95195 0.84402 0.95909 0.92617 1.23555 1.00335 0.99784 0.96645 1.23731 0.96956 0.94827 0.86499 1.88864 1.93343 1.31479 1.15211 1.21675 0.97983 0.87014 0.86763 0.88893 1.19950 0.97756 0.97493 0.93995 1.21103 0.94908 0.95395 0.99461 1.21266 1.00822 1.01106 0.90115 1.21097 0.98601 0.98689 0.88604 1.98358 1.81175 1.83817 1.40586 1.21203 0.96025 0.95812 1.00263 1.21126 1.00383 0.99577 0.91084 0.91655 0.77029 0.90220 0.91712 0.91027 0.86151 0.83974 0.82986 0.83207 0.84074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.49 11.83 21.84 0.26 -49.23 16 2 C 0.03 1.66 5.50 85.31 0.47 2.13 16 3 Si 0.99 39.99 29.56 68.60 2.03 42.02 16 4 H -0.25 -9.06 7.11 99.48 0.71 -8.36 16 5 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 6 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 7 C -0.57 -31.22 9.54 24.83 0.24 -30.99 16 8 H 0.09 4.31 7.85 -2.91 -0.02 4.29 16 9 C 0.54 30.23 7.75 86.36 0.67 30.90 16 10 O -0.63 -41.02 14.70 -4.33 -0.06 -41.08 16 11 N -0.74 -31.34 5.09 -442.11 -2.25 -33.59 16 12 C 0.13 4.94 2.98 45.98 0.14 5.08 16 13 H 0.06 2.50 7.16 -2.39 -0.02 2.48 16 14 C -0.16 -5.34 6.91 32.02 0.22 -5.12 16 15 C 0.06 1.36 7.73 72.79 0.56 1.92 16 16 O -0.37 -10.01 10.29 -148.98 -1.53 -11.54 16 17 C 0.12 3.61 3.42 30.22 0.10 3.72 16 18 H 0.09 2.50 7.55 -2.39 -0.02 2.48 16 19 C -0.09 -2.60 4.80 -19.86 -0.10 -2.69 16 20 C -0.09 -2.37 9.36 22.26 0.21 -2.16 16 21 C -0.11 -2.71 9.83 22.29 0.22 -2.49 16 22 C -0.04 -1.05 6.32 22.33 0.14 -0.91 16 23 Cl -0.07 -1.47 28.96 -2.72 -0.08 -1.55 16 24 C -0.11 -2.81 9.83 22.29 0.22 -2.59 16 25 C -0.10 -2.77 9.69 22.26 0.22 -2.55 16 26 H 0.27 14.95 8.29 -92.71 -0.77 14.18 16 27 H 0.40 14.18 8.29 -92.71 -0.77 13.41 16 28 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.06 2.42 8.06 -2.39 -0.02 2.40 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.14 3.44 7.59 -2.91 -0.02 3.42 16 33 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 34 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 35 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -72.53 318.79 2.02 -70.50 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 0.36 Total: 30.24 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 3.31 Total: -5.76 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -1.99 Total: -82.82 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: -1.60 Total: -52.62 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.08 Total: -1.55 kcal Total: -72.53 2.02 -70.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186133353.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.297 kcal (2) G-P(sol) polarization free energy of solvation -72.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds