Wall clock time and date at job start Tue Mar 31 2020 06:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86806 * 120.00047 * 2 1 4 4 H 1.48508 * 109.46968 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47155 * 119.99912 * 3 2 1 6 6 H 1.48499 * 109.47061 * 239.99966 * 3 2 1 7 7 C 1.40049 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99620 * 4.67287 * 7 2 1 9 9 C 1.46373 * 119.99920 * 184.67678 * 7 2 1 10 10 O 1.21685 * 120.00597 * 6.24481 * 9 7 2 11 11 N 1.34783 * 119.99423 * 186.24716 * 9 7 2 12 12 C 1.46503 * 119.99532 * 179.97438 * 11 9 7 13 13 H 1.08995 * 110.80791 * 322.82531 * 12 11 9 14 14 C 1.54815 * 110.90514 * 86.45300 * 12 11 9 15 15 C 1.54102 * 104.18675 * 97.31571 * 14 12 11 16 16 O 1.43746 * 107.29434 * 357.97155 * 15 14 12 17 17 C 1.44378 * 106.97607 * 26.51159 * 16 15 14 18 18 H 1.08996 * 110.61890 * 78.44310 * 17 16 15 19 19 C 1.50696 * 110.62094 * 201.44200 * 17 16 15 20 20 C 1.38247 * 119.98997 * 33.79576 * 19 17 16 21 21 C 1.38212 * 120.01659 * 179.72798 * 20 19 17 22 22 C 1.38353 * 119.98515 * 0.55080 * 21 20 19 23 23 Cl 1.73596 * 120.01187 * 179.75024 * 22 21 20 24 24 C 1.38354 * 119.97402 * 359.71844 * 22 21 20 25 25 C 1.38210 * 119.98517 * 0.02562 * 24 22 21 26 26 H 0.96997 * 120.00168 * 174.90298 * 1 2 3 27 27 H 0.96999 * 120.00271 * 359.97438 * 11 9 7 28 28 H 1.08997 * 110.49005 * 215.99066 * 14 12 11 29 29 H 1.08996 * 110.48913 * 338.51098 * 14 12 11 30 30 H 1.08998 * 109.88177 * 117.38835 * 15 14 12 31 31 H 1.09001 * 109.87831 * 238.39573 * 15 14 12 32 32 H 1.08002 * 119.98901 * 0.02562 * 20 19 17 33 33 H 1.07995 * 120.00547 * 180.26809 * 21 20 19 34 34 H 1.07998 * 120.00419 * 179.97438 * 24 22 21 35 35 H 1.08002 * 119.99341 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 1.2757 2.7465 0.0006 5 1 3.0945 1.6965 1.2125 6 1 3.0945 1.6964 -1.2125 7 6 2.0070 -1.2128 0.0005 8 1 1.4697 -2.1466 -0.0752 9 6 3.4671 -1.2148 0.1039 10 8 4.0644 -0.1736 0.3034 11 7 4.1499 -2.3700 -0.0219 12 6 5.6113 -2.3719 0.0810 13 1 6.0330 -1.4782 -0.3787 14 6 6.0610 -2.4987 1.5569 15 6 6.3599 -4.0001 1.7331 16 8 6.0530 -4.6461 0.4862 17 6 6.2087 -3.6546 -0.5517 18 1 7.2625 -3.5103 -0.7897 19 6 5.4343 -4.0491 -1.7829 20 6 4.2391 -4.7325 -1.6580 21 6 3.5257 -5.0896 -2.7867 22 6 4.0136 -4.7730 -4.0420 23 17 3.1213 -5.2269 -5.4602 24 6 5.2125 -4.0939 -4.1666 25 6 5.9224 -3.7327 -3.0370 26 1 -0.4850 -0.8367 -0.0746 27 1 3.6738 -3.2001 -0.1806 28 1 6.9595 -1.9075 1.7342 29 1 5.2610 -2.1857 2.2277 30 1 7.4132 -4.1426 1.9748 31 1 5.7384 -4.4109 2.5288 32 1 3.8604 -4.9832 -0.6782 33 1 2.5899 -5.6197 -2.6888 34 1 5.5940 -3.8469 -5.1463 35 1 6.8581 -3.2022 -3.1341 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186133369.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:55 Heat of formation + Delta-G solvation = -80.519249 kcal Electronic energy + Delta-G solvation = -21644.645167 eV Core-core repulsion = 18246.584554 eV Total energy + Delta-G solvation = -3398.060613 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.35903 -38.64597 -37.42403 -36.43953 -33.60346 -32.83738 -31.78465 -31.20286 -30.28140 -27.72741 -25.95425 -23.25982 -22.88289 -21.52596 -20.86402 -19.59283 -18.10752 -17.28695 -16.45315 -16.28589 -15.64389 -15.22609 -14.89568 -14.64650 -14.13033 -13.86458 -13.58798 -13.38771 -13.36566 -13.19325 -12.56657 -12.37397 -12.06699 -11.70601 -11.58398 -11.56134 -11.31192 -10.95539 -10.85186 -10.79345 -10.41314 -10.21472 -9.72633 -9.23055 -9.02062 -8.98807 -8.55037 -8.01097 -7.95395 -7.00178 -4.94008 1.09759 1.30334 2.11997 3.50706 3.56711 3.67391 3.89329 4.05797 4.29526 4.38459 4.58202 4.63207 4.74439 4.83356 4.89423 5.09413 5.16300 5.28284 5.31679 5.40873 5.50043 5.53434 5.66365 5.79509 5.89415 5.93139 6.10811 6.16532 6.22801 6.36093 6.45143 6.76357 6.88833 7.46429 7.64844 7.74099 8.08819 8.82790 9.02835 10.02883 10.32446 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.011738 B = 0.006372 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.753360 B = 4393.268729 C = 6062.329475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.061 3.939 3 Si 1.131 2.869 4 H -0.323 1.323 5 H -0.281 1.281 6 H -0.292 1.292 7 C -0.596 4.596 8 H 0.069 0.931 9 C 0.553 3.447 10 O -0.618 6.618 11 N -0.743 5.743 12 C 0.134 3.866 13 H 0.098 0.902 14 C -0.168 4.168 15 C 0.049 3.951 16 O -0.370 6.370 17 C 0.106 3.894 18 H 0.089 0.911 19 C -0.065 4.065 20 C -0.081 4.081 21 C -0.106 4.106 22 C -0.033 4.033 23 Cl -0.077 7.077 24 C -0.110 4.110 25 C -0.097 4.097 26 H 0.277 0.723 27 H 0.388 0.612 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.726 -11.244 -4.672 16.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.157 4.157 3 Si 0.964 3.036 4 H -0.255 1.255 5 H -0.208 1.208 6 H -0.219 1.219 7 C -0.632 4.632 8 H 0.087 0.913 9 C 0.362 3.638 10 O -0.512 6.512 11 N -0.396 5.396 12 C 0.026 3.974 13 H 0.115 0.885 14 C -0.207 4.207 15 C -0.027 4.027 16 O -0.289 6.289 17 C 0.048 3.952 18 H 0.106 0.894 19 C -0.065 4.065 20 C -0.100 4.100 21 C -0.125 4.125 22 C -0.059 4.059 23 Cl -0.048 7.048 24 C -0.128 4.128 25 C -0.116 4.116 26 H 0.088 0.912 27 H 0.224 0.776 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.736 -9.275 -4.625 15.657 hybrid contribution -0.172 -2.171 -0.170 2.184 sum 11.564 -11.445 -4.795 16.962 Atomic orbital electron populations 1.70648 1.07609 1.32014 1.35713 1.27148 0.95322 1.04945 0.88276 0.82370 0.71408 0.70807 0.79037 1.25477 1.20838 1.21926 1.22020 0.89880 0.96279 1.55012 0.91301 1.18454 0.88664 0.81241 0.75472 1.90138 1.70614 1.31284 1.59133 1.45891 1.03666 1.11204 1.78846 1.22009 0.84894 0.96955 0.93548 0.88457 1.23438 1.02728 0.95630 0.98950 1.23154 0.99893 0.92766 0.86921 1.88873 1.90642 1.34078 1.15317 1.22265 0.98080 0.88105 0.86719 0.89377 1.19558 0.95412 0.98094 0.93448 1.20928 0.93750 0.96730 0.98566 1.21051 1.00378 1.00548 0.90477 1.20914 0.94697 1.02383 0.87942 1.98359 1.75214 1.91375 1.39864 1.20929 0.93739 0.98690 0.99469 1.20832 1.00161 0.99631 0.90941 0.91190 0.77568 0.90411 0.89514 0.92508 0.89895 0.84621 0.84822 0.84926 0.85030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.11 13.64 55.55 0.76 -23.35 16 2 C 0.06 1.75 5.52 -17.37 -0.10 1.66 16 3 Si 1.13 29.92 25.99 -169.99 -4.42 25.51 16 4 H -0.32 -8.26 7.11 56.52 0.40 -7.85 16 5 H -0.28 -7.62 6.78 56.52 0.38 -7.23 16 6 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 7 C -0.60 -16.74 9.96 -35.63 -0.36 -17.10 16 8 H 0.07 1.92 8.05 -52.49 -0.42 1.50 16 9 C 0.55 14.40 7.57 -12.98 -0.10 14.30 16 10 O -0.62 -17.30 11.81 5.20 0.06 -17.24 16 11 N -0.74 -15.37 4.61 -53.26 -0.25 -15.62 16 12 C 0.13 2.27 3.13 -65.92 -0.21 2.06 16 13 H 0.10 1.77 7.72 -51.93 -0.40 1.37 16 14 C -0.17 -2.50 6.75 -25.20 -0.17 -2.67 16 15 C 0.05 0.62 7.70 37.73 0.29 0.91 16 16 O -0.37 -5.25 10.41 -35.23 -0.37 -5.62 16 17 C 0.11 1.47 3.45 -26.83 -0.09 1.38 16 18 H 0.09 1.01 8.08 -51.93 -0.42 0.59 16 19 C -0.06 -0.92 4.72 -104.62 -0.49 -1.41 16 20 C -0.08 -1.18 7.49 -39.59 -0.30 -1.48 16 21 C -0.11 -1.47 9.83 -39.55 -0.39 -1.85 16 22 C -0.03 -0.44 6.32 -39.50 -0.25 -0.69 16 23 Cl -0.08 -0.96 28.96 -51.86 -1.50 -2.46 16 24 C -0.11 -1.38 9.83 -39.55 -0.39 -1.77 16 25 C -0.10 -1.24 9.70 -39.59 -0.38 -1.62 16 26 H 0.28 7.73 8.72 -40.82 -0.36 7.37 16 27 H 0.39 7.56 5.38 -40.82 -0.22 7.34 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.09 1.50 8.06 -51.93 -0.42 1.08 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.14 1.95 6.74 -52.49 -0.35 1.60 16 33 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 34 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 35 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 309.72 15.07 4.67 4.67 Total: -1.00 -31.69 309.72 -7.92 -39.60 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -3.94 Total: 2.81 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -2.93 Total: -8.30 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.51 Total: -38.97 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.31 Total: -22.86 kcal Atomic # 14 Polarization: 29.92 SS G_CDS: -4.42 Total: 25.51 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.69 -7.92 -39.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186133369.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.916 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds