Wall clock time and date at job start Tue Mar 31 2020 06:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86806 * 120.00047 * 2 1 4 4 H 1.48508 * 109.46968 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47155 * 119.99912 * 3 2 1 6 6 H 1.48499 * 109.47061 * 239.99966 * 3 2 1 7 7 C 1.40049 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99620 * 4.67287 * 7 2 1 9 9 C 1.46373 * 119.99920 * 184.67678 * 7 2 1 10 10 O 1.21685 * 120.00597 * 6.24481 * 9 7 2 11 11 N 1.34783 * 119.99423 * 186.24716 * 9 7 2 12 12 C 1.46503 * 119.99532 * 179.97438 * 11 9 7 13 13 H 1.08995 * 110.80791 * 322.82531 * 12 11 9 14 14 C 1.54815 * 110.90514 * 86.45300 * 12 11 9 15 15 C 1.54102 * 104.18675 * 97.31571 * 14 12 11 16 16 O 1.43746 * 107.29434 * 357.97155 * 15 14 12 17 17 C 1.44378 * 106.97607 * 26.51159 * 16 15 14 18 18 H 1.08996 * 110.61890 * 78.44310 * 17 16 15 19 19 C 1.50696 * 110.62094 * 201.44200 * 17 16 15 20 20 C 1.38247 * 119.98997 * 33.79576 * 19 17 16 21 21 C 1.38212 * 120.01659 * 179.72798 * 20 19 17 22 22 C 1.38353 * 119.98515 * 0.55080 * 21 20 19 23 23 Cl 1.73596 * 120.01187 * 179.75024 * 22 21 20 24 24 C 1.38354 * 119.97402 * 359.71844 * 22 21 20 25 25 C 1.38210 * 119.98517 * 0.02562 * 24 22 21 26 26 H 0.96997 * 120.00168 * 174.90298 * 1 2 3 27 27 H 0.96999 * 120.00271 * 359.97438 * 11 9 7 28 28 H 1.08997 * 110.49005 * 215.99066 * 14 12 11 29 29 H 1.08996 * 110.48913 * 338.51098 * 14 12 11 30 30 H 1.08998 * 109.88177 * 117.38835 * 15 14 12 31 31 H 1.09001 * 109.87831 * 238.39573 * 15 14 12 32 32 H 1.08002 * 119.98901 * 0.02562 * 20 19 17 33 33 H 1.07995 * 120.00547 * 180.26809 * 21 20 19 34 34 H 1.07998 * 120.00419 * 179.97438 * 24 22 21 35 35 H 1.08002 * 119.99341 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 1.2757 2.7465 0.0006 5 1 3.0945 1.6965 1.2125 6 1 3.0945 1.6964 -1.2125 7 6 2.0070 -1.2128 0.0005 8 1 1.4697 -2.1466 -0.0752 9 6 3.4671 -1.2148 0.1039 10 8 4.0644 -0.1736 0.3034 11 7 4.1499 -2.3700 -0.0219 12 6 5.6113 -2.3719 0.0810 13 1 6.0330 -1.4782 -0.3787 14 6 6.0610 -2.4987 1.5569 15 6 6.3599 -4.0001 1.7331 16 8 6.0530 -4.6461 0.4862 17 6 6.2087 -3.6546 -0.5517 18 1 7.2625 -3.5103 -0.7897 19 6 5.4343 -4.0491 -1.7829 20 6 4.2391 -4.7325 -1.6580 21 6 3.5257 -5.0896 -2.7867 22 6 4.0136 -4.7730 -4.0420 23 17 3.1213 -5.2269 -5.4602 24 6 5.2125 -4.0939 -4.1666 25 6 5.9224 -3.7327 -3.0370 26 1 -0.4850 -0.8367 -0.0746 27 1 3.6738 -3.2001 -0.1806 28 1 6.9595 -1.9075 1.7342 29 1 5.2610 -2.1857 2.2277 30 1 7.4132 -4.1426 1.9748 31 1 5.7384 -4.4109 2.5288 32 1 3.8604 -4.9832 -0.6782 33 1 2.5899 -5.6197 -2.6888 34 1 5.5940 -3.8469 -5.1463 35 1 6.8581 -3.2022 -3.1341 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186133369.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:55 Heat of formation + Delta-G solvation = -100.959870 kcal Electronic energy + Delta-G solvation = -21645.531539 eV Core-core repulsion = 18246.584554 eV Total energy + Delta-G solvation = -3398.946985 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.54958 -39.84238 -39.19360 -37.44900 -35.30465 -34.91799 -32.85749 -32.27730 -31.64787 -29.02794 -27.84491 -24.39986 -23.92100 -22.90116 -22.11728 -21.22773 -20.16251 -18.34494 -17.81654 -17.70831 -16.88977 -16.48550 -16.44184 -15.80827 -15.72172 -15.39036 -15.24774 -14.60159 -14.55589 -14.42570 -14.34359 -14.06758 -13.60234 -12.95276 -12.82764 -12.61217 -12.52736 -12.36102 -12.34031 -12.06404 -11.96646 -11.81419 -11.36931 -11.19870 -10.76715 -10.11384 -10.03039 -9.75262 -9.59310 -9.20689 -7.14827 0.04752 0.28141 1.10194 1.42983 1.53787 1.96289 2.19969 2.37779 2.46334 2.78518 2.94703 3.25430 3.53371 3.64965 3.77922 3.90258 4.04122 4.15068 4.17514 4.25595 4.35763 4.48973 4.64245 4.65673 4.81608 4.93130 4.94756 5.08332 5.17396 5.20051 5.40745 5.44435 5.50721 5.75225 5.80775 5.86855 6.04800 6.63975 7.11419 7.98762 8.10338 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.011738 B = 0.006372 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.753360 B = 4393.268729 C = 6062.329475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.029 3.971 3 Si 1.164 2.836 4 H -0.310 1.310 5 H -0.292 1.292 6 H -0.294 1.294 7 C -0.616 4.616 8 H 0.060 0.940 9 C 0.555 3.445 10 O -0.637 6.637 11 N -0.731 5.731 12 C 0.119 3.881 13 H 0.087 0.913 14 C -0.165 4.165 15 C 0.053 3.947 16 O -0.381 6.381 17 C 0.120 3.880 18 H 0.124 0.876 19 C -0.083 4.083 20 C -0.097 4.097 21 C -0.119 4.119 22 C -0.044 4.044 23 Cl -0.072 7.072 24 C -0.112 4.112 25 C -0.097 4.097 26 H 0.276 0.724 27 H 0.394 0.606 28 H 0.100 0.900 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.129 0.871 33 H 0.140 0.860 34 H 0.156 0.844 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.957 -11.694 -5.159 18.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.185 4.185 3 Si 0.995 3.005 4 H -0.240 1.240 5 H -0.220 1.220 6 H -0.222 1.222 7 C -0.653 4.653 8 H 0.078 0.922 9 C 0.361 3.639 10 O -0.532 6.532 11 N -0.382 5.382 12 C 0.013 3.987 13 H 0.105 0.895 14 C -0.204 4.204 15 C -0.023 4.023 16 O -0.300 6.300 17 C 0.062 3.938 18 H 0.141 0.859 19 C -0.083 4.083 20 C -0.116 4.116 21 C -0.138 4.138 22 C -0.071 4.071 23 Cl -0.043 7.043 24 C -0.130 4.130 25 C -0.115 4.115 26 H 0.087 0.913 27 H 0.231 0.769 28 H 0.119 0.881 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.147 0.853 33 H 0.157 0.843 34 H 0.174 0.826 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 13.972 -9.765 -5.114 17.797 hybrid contribution -0.823 -2.124 -0.041 2.279 sum 13.149 -11.890 -5.155 18.461 Atomic orbital electron populations 1.70658 1.07878 1.32055 1.37182 1.27844 0.95681 1.06828 0.88195 0.81923 0.70698 0.69681 0.78213 1.24048 1.22037 1.22196 1.22199 0.91485 0.95879 1.55711 0.92201 1.18235 0.88264 0.82341 0.75088 1.90113 1.70920 1.32390 1.59804 1.45653 1.05713 1.09797 1.77083 1.22321 0.82159 0.98579 0.95683 0.89459 1.23386 1.02597 0.97923 0.96504 1.23250 1.01965 0.90669 0.86412 1.88874 1.91006 1.34240 1.15910 1.22282 0.99410 0.85944 0.86178 0.85908 1.19779 0.95520 0.98605 0.94410 1.20981 0.94457 0.97658 0.98475 1.21198 1.00819 1.00984 0.90766 1.21107 0.95296 1.02635 0.88023 1.98358 1.75189 1.91348 1.39375 1.21271 0.93204 0.97830 1.00692 1.21198 1.01101 0.98976 0.90196 0.91319 0.76873 0.88116 0.92476 0.89217 0.89592 0.85313 0.84253 0.82642 0.82094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.59 13.64 21.84 0.30 -49.29 16 2 C 0.03 1.66 5.52 85.31 0.47 2.13 16 3 Si 1.16 60.78 25.99 68.60 1.78 62.56 16 4 H -0.31 -15.30 7.11 99.48 0.71 -14.59 16 5 H -0.29 -15.70 6.78 99.48 0.67 -15.03 16 6 H -0.29 -15.34 7.11 99.48 0.71 -14.64 16 7 C -0.62 -35.07 9.96 24.83 0.25 -34.82 16 8 H 0.06 3.42 8.05 -2.91 -0.02 3.40 16 9 C 0.55 28.90 7.57 86.36 0.65 29.56 16 10 O -0.64 -35.48 11.81 -4.30 -0.05 -35.53 16 11 N -0.73 -29.90 4.61 -440.65 -2.03 -31.93 16 12 C 0.12 3.83 3.13 46.29 0.14 3.97 16 13 H 0.09 3.02 7.72 -2.39 -0.02 3.00 16 14 C -0.16 -4.57 6.75 31.59 0.21 -4.36 16 15 C 0.05 1.18 7.70 72.35 0.56 1.74 16 16 O -0.38 -9.83 10.41 -148.98 -1.55 -11.38 16 17 C 0.12 2.97 3.45 30.53 0.11 3.08 16 18 H 0.12 2.26 8.08 -2.39 -0.02 2.24 16 19 C -0.08 -2.19 4.72 -19.86 -0.09 -2.28 16 20 C -0.10 -2.76 7.49 22.27 0.17 -2.60 16 21 C -0.12 -3.25 9.83 22.29 0.22 -3.03 16 22 C -0.04 -1.14 6.32 22.32 0.14 -1.00 16 23 Cl -0.07 -1.71 28.96 -2.72 -0.08 -1.79 16 24 C -0.11 -2.55 9.83 22.29 0.22 -2.33 16 25 C -0.10 -2.19 9.70 22.26 0.22 -1.97 16 26 H 0.28 15.65 8.72 -92.71 -0.81 14.84 16 27 H 0.39 15.32 5.38 -92.71 -0.50 14.82 16 28 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.06 1.93 8.06 -2.39 -0.02 1.91 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.13 3.72 6.74 -2.91 -0.02 3.70 16 33 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 34 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 35 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -67.47 309.72 2.18 -65.29 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.55 Total: 13.98 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 3.26 Total: -11.91 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -1.73 Total: -81.22 kcal Atomic # 8 Polarization: -45.30 SS G_CDS: -1.60 Total: -46.91 kcal Atomic # 14 Polarization: 60.78 SS G_CDS: 1.78 Total: 62.56 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.08 Total: -1.79 kcal Total: -67.47 2.18 -65.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186133369.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.673 kcal (2) G-P(sol) polarization free energy of solvation -67.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds