Wall clock time and date at job start Tue Mar 31 2020 06:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99820 * 2 1 4 4 H 1.48503 * 109.47305 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47166 * 119.99674 * 3 2 1 6 6 H 1.48499 * 109.46987 * 239.99642 * 3 2 1 7 7 C 1.37870 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00066 * 193.83475 * 7 2 1 9 9 C 1.50700 * 120.00275 * 13.83955 * 7 2 1 10 10 O 1.42897 * 112.94783 * 53.31840 * 9 7 2 11 11 C 1.53951 * 113.73930 * 281.58305 * 9 7 2 12 12 N 1.47585 * 86.11814 * 222.04471 * 11 9 7 13 13 C 1.34771 * 134.49296 * 204.63537 * 12 11 9 14 14 O 1.21279 * 120.00331 * 180.02562 * 13 12 11 15 15 C 1.50707 * 120.00011 * 0.02562 * 13 12 11 16 16 C 1.50705 * 109.46846 * 179.97438 * 15 13 12 17 17 C 1.38244 * 119.98372 * 269.72497 * 16 15 13 18 18 C 1.38207 * 120.00898 * 179.73144 * 17 16 15 19 19 C 1.38360 * 119.98678 * 0.54278 * 18 17 16 20 20 Cl 1.73606 * 120.01190 * 179.70751 * 19 18 17 21 21 C 1.38344 * 119.97313 * 359.73150 * 19 18 17 22 22 C 1.38214 * 119.98909 * 359.97438 * 21 19 18 23 23 C 1.47584 * 91.01048 * 24.64339 * 12 11 9 24 24 H 0.97007 * 119.99483 * 185.87567 * 1 2 3 25 25 H 0.96698 * 114.00098 * 303.04147 * 10 9 7 26 26 H 1.08994 * 113.76900 * 336.35179 * 11 9 7 27 27 H 1.09010 * 113.76488 * 107.74641 * 11 9 7 28 28 H 1.08992 * 109.46728 * 299.99633 * 15 13 12 29 29 H 1.08994 * 109.46926 * 59.99489 * 15 13 12 30 30 H 1.08002 * 119.99261 * 0.02562 * 17 16 15 31 31 H 1.08005 * 120.00747 * 180.27340 * 18 17 16 32 32 H 1.08002 * 120.00842 * 179.97438 * 21 19 18 33 33 H 1.07996 * 119.99663 * 179.97438 * 22 21 19 34 34 H 1.09003 * 113.76727 * 221.05145 * 23 12 11 35 35 H 1.09000 * 113.86995 * 89.67487 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0610 -1.2075 0.2242 9 6 1.2839 -2.4803 -0.3111 10 8 0.5652 -2.4315 -1.5452 11 6 0.4600 -3.0303 0.8674 12 7 0.9831 -4.3560 0.4838 13 6 0.5567 -5.6237 0.6495 14 8 1.2133 -6.5461 0.2150 15 6 -0.7362 -5.8951 1.3748 16 6 -0.9828 -7.3811 1.4228 17 6 -1.6961 -7.9961 0.4108 18 6 -1.9178 -9.3597 0.4515 19 6 -1.4354 -10.1074 1.5110 20 17 -1.7200 -11.8191 1.5667 21 6 -0.7265 -9.4904 2.5263 22 6 -0.5002 -8.1276 2.4815 23 6 2.1608 -3.7358 -0.1538 24 1 -0.4850 -0.8357 0.0860 25 1 -0.0835 -1.7161 -1.5945 26 1 0.8051 -2.6872 1.8427 27 1 -0.6172 -2.9282 0.7358 28 1 -0.6722 -5.5041 2.3901 29 1 -1.5571 -5.4077 0.8488 30 1 -2.0761 -7.4117 -0.4141 31 1 -2.4713 -9.8409 -0.3413 32 1 -0.3500 -10.0734 3.3538 33 1 0.0528 -7.6458 3.2741 34 1 2.4415 -4.1971 -1.1007 35 1 3.0066 -3.5995 0.5201 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186819755.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:55 Heat of formation + Delta-G solvation = -54.831534 kcal Electronic energy + Delta-G solvation = -20705.164329 eV Core-core repulsion = 17308.217619 eV Total energy + Delta-G solvation = -3396.946710 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.48868 -40.41381 -39.07401 -37.47954 -36.10607 -34.32466 -33.76587 -32.08530 -30.68021 -28.32892 -27.22781 -26.40343 -23.87942 -22.95511 -21.88225 -20.22622 -19.64953 -18.16498 -18.07139 -17.14540 -17.02306 -16.66875 -16.32391 -15.96499 -15.69094 -15.48675 -14.73486 -14.53989 -14.46729 -14.42359 -14.11207 -13.89993 -13.43649 -13.15782 -12.95410 -12.63817 -12.53154 -12.42164 -12.39856 -12.33194 -11.90210 -11.81440 -11.19279 -11.14025 -10.71595 -10.22568 -10.04554 -9.66714 -9.57695 -8.66070 -6.46634 0.05548 0.29031 1.09365 1.56318 1.62109 1.65749 1.84438 1.87145 2.56114 2.60506 2.92620 3.39345 3.57222 3.69300 3.72819 3.90695 3.93115 4.14870 4.29066 4.35229 4.42440 4.49202 4.55300 4.62856 4.65534 4.71931 4.82425 4.93987 5.00297 5.16323 5.18869 5.48661 5.75965 5.76996 6.10509 6.48302 6.74693 6.94859 7.07424 7.28574 8.67429 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.050579 B = 0.002782 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.457620 B =10062.065378 C =10094.535353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.001 3.999 3 Si 1.108 2.892 4 H -0.284 1.284 5 H -0.270 1.270 6 H -0.280 1.280 7 C -0.633 4.633 8 H 0.059 0.941 9 C 0.197 3.803 10 O -0.577 6.577 11 C 0.087 3.913 12 N -0.634 5.634 13 C 0.526 3.474 14 O -0.589 6.589 15 C -0.089 4.089 16 C -0.070 4.070 17 C -0.105 4.105 18 C -0.114 4.114 19 C -0.046 4.046 20 Cl -0.070 7.070 21 C -0.113 4.113 22 C -0.102 4.102 23 C 0.120 3.880 24 H 0.266 0.734 25 H 0.374 0.626 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.126 0.874 29 H 0.117 0.883 30 H 0.137 0.863 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.144 0.856 34 H 0.058 0.942 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.370 -13.302 6.379 15.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.201 4.201 3 Si 0.930 3.070 4 H -0.209 1.209 5 H -0.195 1.195 6 H -0.206 1.206 7 C -0.671 4.671 8 H 0.078 0.922 9 C 0.156 3.844 10 O -0.384 6.384 11 C -0.036 4.036 12 N -0.368 5.368 13 C 0.318 3.682 14 O -0.470 6.470 15 C -0.128 4.128 16 C -0.071 4.071 17 C -0.123 4.123 18 C -0.133 4.133 19 C -0.073 4.073 20 Cl -0.041 7.041 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.003 4.003 24 H 0.078 0.922 25 H 0.223 0.777 26 H 0.112 0.888 27 H 0.096 0.904 28 H 0.144 0.856 29 H 0.135 0.865 30 H 0.155 0.845 31 H 0.166 0.834 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.076 0.924 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.959 -13.051 5.980 15.188 hybrid contribution -0.046 -1.331 -0.012 1.332 sum -5.005 -14.382 5.967 16.356 Atomic orbital electron populations 1.71016 1.07487 1.30760 1.45934 1.27014 0.96432 1.05643 0.91054 0.83026 0.74373 0.71908 0.77669 1.20944 1.19509 1.20575 1.22452 0.97809 0.93199 1.53591 0.92234 1.20346 0.89458 0.92967 0.81602 1.86241 1.57182 1.56233 1.38791 1.24232 0.99950 0.78348 1.01077 1.50193 1.25273 1.05008 1.56353 1.20849 0.87873 0.80186 0.79320 1.90655 1.59887 1.43685 1.52792 1.20629 0.94718 0.94033 1.03470 1.19576 0.97540 0.94521 0.95418 1.21189 0.98412 0.94528 0.98207 1.21205 1.00543 0.93573 0.97938 1.21075 1.02857 0.85232 0.98133 1.98358 1.95116 1.12227 1.98383 1.21228 0.98440 0.94781 0.98691 1.21200 0.98650 0.93495 0.98624 1.23254 0.90357 0.89953 0.96689 0.92218 0.77662 0.88829 0.90373 0.85643 0.86501 0.84469 0.83382 0.83107 0.83819 0.92363 0.88269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.07 12.80 21.45 0.27 -45.80 16 2 C 0.00 0.03 5.26 84.65 0.45 0.48 16 3 Si 1.11 44.01 29.93 68.60 2.05 46.06 16 4 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 6 H -0.28 -10.85 7.11 99.48 0.71 -10.15 16 7 C -0.63 -30.92 8.56 25.60 0.22 -30.70 16 8 H 0.06 2.90 7.85 -2.91 -0.02 2.88 16 9 C 0.20 8.89 1.08 -10.88 -0.01 8.87 16 10 O -0.58 -27.59 13.45 -148.98 -2.00 -29.59 16 11 C 0.09 3.32 7.05 86.48 0.61 3.93 16 12 N -0.63 -24.46 3.61 -840.13 -3.03 -27.49 16 13 C 0.53 19.20 8.05 87.66 0.71 19.91 16 14 O -0.59 -25.64 16.76 -3.03 -0.05 -25.69 16 15 C -0.09 -2.32 5.58 29.11 0.16 -2.16 16 16 C -0.07 -1.79 4.37 -19.86 -0.09 -1.88 16 17 C -0.11 -2.57 9.70 22.26 0.22 -2.36 16 18 C -0.11 -2.56 9.83 22.29 0.22 -2.34 16 19 C -0.05 -1.04 6.32 22.32 0.14 -0.90 16 20 Cl -0.07 -1.38 28.96 -2.72 -0.08 -1.46 16 21 C -0.11 -2.43 9.83 22.29 0.22 -2.21 16 22 C -0.10 -2.35 9.70 22.26 0.22 -2.14 16 23 C 0.12 5.05 8.22 86.48 0.71 5.76 16 24 H 0.27 12.95 5.52 -92.70 -0.51 12.43 16 25 H 0.37 17.49 6.95 -74.06 -0.52 16.98 16 26 H 0.09 3.48 8.09 -2.39 -0.02 3.46 16 27 H 0.08 2.79 7.80 -2.38 -0.02 2.77 16 28 H 0.13 2.64 8.09 -2.39 -0.02 2.62 16 29 H 0.12 2.70 8.08 -2.39 -0.02 2.68 16 30 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 31 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 32 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 33 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 34 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.10 3.89 8.09 -2.39 -0.02 3.87 16 Total: -1.00 -60.36 321.25 1.79 -58.56 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: 0.86 Total: 31.13 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 3.77 Total: -5.73 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -2.76 Total: -73.29 kcal Atomic # 8 Polarization: -53.22 SS G_CDS: -2.06 Total: -55.28 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.05 Total: 46.06 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.08 Total: -1.46 kcal Total: -60.36 1.79 -58.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186819755.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.733 kcal (2) G-P(sol) polarization free energy of solvation -60.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds