Wall clock time and date at job start Tue Mar 31 2020 06:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00006 * 2 1 4 4 H 1.48499 * 109.47371 * 239.99432 * 3 2 1 5 5 H 1.48504 * 109.47071 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46903 * 119.99407 * 3 2 1 7 7 C 1.37870 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00444 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99990 * 0.02562 * 7 2 1 10 10 O 1.42895 * 113.41239 * 46.79491 * 9 7 2 11 11 C 1.53494 * 114.20654 * 179.97438 * 9 7 2 12 12 N 1.47066 * 87.98836 * 139.65569 * 11 9 7 13 13 C 1.34777 * 136.06124 * 152.83913 * 12 11 9 14 14 O 1.21276 * 120.00267 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99743 * 180.02562 * 13 12 11 16 16 C 1.50706 * 109.47130 * 180.02562 * 15 13 12 17 17 C 1.38264 * 119.99067 * 89.99614 * 16 15 13 18 18 C 1.38224 * 120.02445 * 180.02562 * 17 16 15 19 19 C 1.38237 * 120.01313 * 0.26351 * 18 17 16 20 20 C 1.38338 * 119.98297 * 359.50743 * 19 18 17 21 21 Cl 1.73597 * 120.00852 * 180.25600 * 20 19 18 22 22 C 1.38189 * 119.99237 * 270.02509 * 16 15 13 23 23 C 1.47072 * 87.88134 * 333.10051 * 12 11 9 24 24 H 0.96999 * 119.99676 * 0.02562 * 1 2 3 25 25 H 0.96701 * 114.00391 * 313.20096 * 10 9 7 26 26 H 1.08996 * 113.47260 * 24.87588 * 11 9 7 27 27 H 1.09002 * 113.46506 * 254.43086 * 11 9 7 28 28 H 1.08995 * 109.47261 * 60.00531 * 15 13 12 29 29 H 1.08997 * 109.47352 * 300.00075 * 15 13 12 30 30 H 1.07997 * 119.98741 * 359.97438 * 17 16 15 31 31 H 1.08002 * 119.99032 * 179.97438 * 18 17 16 32 32 H 1.07995 * 120.00242 * 179.74655 * 19 18 17 33 33 H 1.08000 * 120.00840 * 359.97438 * 22 16 15 34 34 H 1.09002 * 113.46758 * 141.67836 * 23 12 11 35 35 H 1.09004 * 113.46689 * 272.11801 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.1900 -2.5422 -0.9557 11 6 2.1488 -3.7442 0.0005 12 7 1.2100 -4.3575 0.9520 13 6 0.8346 -5.6114 1.2734 14 8 1.3286 -6.5583 0.6991 15 6 -0.1992 -5.8366 2.3466 16 6 -0.4376 -7.3155 2.5120 17 6 0.3199 -8.0412 3.4126 18 6 0.1021 -9.3977 3.5644 19 6 -0.8695 -10.0306 2.8118 20 6 -1.6308 -9.3040 1.9140 21 17 -2.8557 -10.0968 0.9733 22 6 -1.4128 -7.9459 1.7629 23 6 0.8561 -3.0000 1.3939 24 1 -0.4849 0.8401 -0.0004 25 1 -0.3737 -1.7565 -0.9535 26 1 3.1384 -3.5658 0.4211 27 1 2.1849 -4.2532 -0.9627 28 1 -1.1308 -5.3477 2.0621 29 1 0.1575 -5.4190 3.2881 30 1 1.0825 -7.5482 3.9971 31 1 0.6944 -9.9642 4.2679 32 1 -1.0367 -11.0912 2.9276 33 1 -2.0044 -7.3789 1.0594 34 1 -0.2046 -2.8775 1.6131 35 1 1.4980 -2.6214 2.1894 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186833546.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:28 Heat of formation + Delta-G solvation = -31.955984 kcal Electronic energy + Delta-G solvation = -20719.270675 eV Core-core repulsion = 17323.315923 eV Total energy + Delta-G solvation = -3395.954752 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.95755 -39.14023 -37.38741 -36.47465 -34.03542 -32.79122 -32.23044 -30.78650 -29.27865 -27.25889 -25.20148 -25.04061 -22.74554 -21.84345 -20.13522 -18.30768 -17.48392 -17.00724 -16.33420 -15.81293 -15.64859 -15.30026 -14.86490 -14.65264 -14.20582 -13.84249 -13.52956 -13.23330 -13.17245 -12.75582 -12.44626 -12.13722 -11.80942 -11.59991 -11.57245 -11.46354 -11.32140 -11.07875 -11.05433 -10.88443 -10.53313 -10.30168 -9.70862 -9.27645 -8.93118 -8.81381 -8.69349 -8.42914 -7.88770 -6.44151 -4.54714 1.11272 1.21660 2.06551 3.13336 3.15015 3.19678 3.21833 3.38328 3.75499 4.14972 4.59460 4.72918 4.78500 4.96264 5.07829 5.18439 5.22615 5.39391 5.54196 5.57539 5.75362 5.83501 5.90377 6.13507 6.15818 6.23803 6.37183 6.44514 6.47761 6.58321 6.64917 6.74605 7.06869 7.59047 7.76453 8.46064 8.50182 8.71909 9.16907 9.45192 10.62497 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.032461 B = 0.003111 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.368656 B = 8998.810298 C = 9366.199127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.240 3.760 10 O -0.572 6.572 11 C 0.107 3.893 12 N -0.636 5.636 13 C 0.537 3.463 14 O -0.556 6.556 15 C -0.098 4.098 16 C -0.043 4.043 17 C -0.102 4.102 18 C -0.108 4.108 19 C -0.116 4.116 20 C -0.032 4.032 21 Cl -0.077 7.077 22 C -0.095 4.095 23 C 0.071 3.929 24 H 0.275 0.725 25 H 0.394 0.606 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.065 0.935 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.088 -11.936 8.236 14.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.736 3.264 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.090 0.910 9 C 0.198 3.802 10 O -0.385 6.385 11 C -0.015 4.015 12 N -0.369 5.369 13 C 0.326 3.674 14 O -0.436 6.436 15 C -0.138 4.138 16 C -0.043 4.043 17 C -0.120 4.120 18 C -0.126 4.126 19 C -0.135 4.135 20 C -0.059 4.059 21 Cl -0.048 7.048 22 C -0.114 4.114 23 C -0.052 4.052 24 H 0.085 0.915 25 H 0.250 0.750 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.083 0.917 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.921 -13.158 7.766 15.556 hybrid contribution 0.027 1.388 0.160 1.397 sum -2.894 -11.771 7.926 14.483 Atomic orbital electron populations 1.69251 1.06205 1.28358 1.50068 1.25074 0.95033 0.99933 0.92970 0.86361 0.79485 0.81505 0.79020 1.19818 1.20967 1.19858 1.21397 0.93909 0.89767 1.52222 0.90971 1.19484 0.85422 0.91047 0.84250 1.86050 1.44968 1.48298 1.59163 1.23325 0.93804 0.92172 0.92220 1.49721 1.42305 1.04682 1.40194 1.19776 0.83019 0.81106 0.83519 1.90670 1.57688 1.40607 1.54630 1.20613 1.00421 0.93048 0.99738 1.19315 0.94845 0.94772 0.95398 1.21108 0.98474 0.94220 0.98169 1.21031 0.97607 0.94552 0.99414 1.20989 0.96226 1.00058 0.96238 1.20836 0.94608 0.93126 0.97307 1.98359 1.53957 1.80321 1.72148 1.20918 0.98600 0.92668 0.99197 1.24191 1.00442 0.77854 1.02763 0.91487 0.74965 0.89725 0.91590 0.87855 0.87986 0.85530 0.85154 0.85201 0.84992 0.91683 0.90008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.16 11.01 55.43 0.61 -21.54 16 2 C 0.07 1.75 5.40 -17.82 -0.10 1.66 16 3 Si 0.91 18.94 29.54 -169.99 -5.02 13.92 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 7 C -0.53 -13.04 8.69 -34.44 -0.30 -13.34 16 8 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.24 5.60 1.57 -91.39 -0.14 5.46 16 10 O -0.57 -14.49 13.53 -35.23 -0.48 -14.97 16 11 C 0.11 2.30 8.03 -8.51 -0.07 2.23 16 12 N -0.64 -12.97 3.69 -185.38 -0.68 -13.65 16 13 C 0.54 10.45 8.07 -10.99 -0.09 10.36 16 14 O -0.56 -12.58 16.81 5.56 0.09 -12.49 16 15 C -0.10 -1.44 5.66 -29.03 -0.16 -1.60 16 16 C -0.04 -0.60 4.37 -104.63 -0.46 -1.06 16 17 C -0.10 -1.27 9.70 -39.58 -0.38 -1.65 16 18 C -0.11 -1.18 10.05 -39.59 -0.40 -1.58 16 19 C -0.12 -1.33 9.83 -39.55 -0.39 -1.72 16 20 C -0.03 -0.42 6.32 -39.50 -0.25 -0.67 16 21 Cl -0.08 -0.92 28.96 -51.86 -1.50 -2.43 16 22 C -0.10 -1.35 9.49 -39.55 -0.38 -1.72 16 23 C 0.07 1.44 7.82 -8.64 -0.07 1.37 16 24 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 25 H 0.39 10.05 6.33 45.56 0.29 10.34 16 26 H 0.08 1.66 8.10 -51.93 -0.42 1.24 16 27 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.10 1.41 8.09 -51.93 -0.42 0.99 16 29 H 0.10 1.25 8.08 -51.93 -0.42 0.83 16 30 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 LS Contribution 323.20 15.07 4.87 4.87 Total: -1.00 -28.22 323.20 -8.76 -36.98 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -3.47 Total: 11.57 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -3.18 Total: -2.26 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: -0.07 Total: -35.20 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.38 Total: -27.46 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.22 -8.76 -36.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186833546.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.029 kcal (2) G-P(sol) polarization free energy of solvation -28.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds