Wall clock time and date at job start Tue Mar 31 2020 06:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00006 * 2 1 4 4 H 1.48499 * 109.47371 * 239.99432 * 3 2 1 5 5 H 1.48504 * 109.47071 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46903 * 119.99407 * 3 2 1 7 7 C 1.37870 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00444 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99990 * 0.02562 * 7 2 1 10 10 O 1.42895 * 113.41239 * 46.79491 * 9 7 2 11 11 C 1.53494 * 114.20654 * 179.97438 * 9 7 2 12 12 N 1.47066 * 87.98836 * 139.65569 * 11 9 7 13 13 C 1.34777 * 136.06124 * 152.83913 * 12 11 9 14 14 O 1.21276 * 120.00267 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99743 * 180.02562 * 13 12 11 16 16 C 1.50706 * 109.47130 * 180.02562 * 15 13 12 17 17 C 1.38264 * 119.99067 * 89.99614 * 16 15 13 18 18 C 1.38224 * 120.02445 * 180.02562 * 17 16 15 19 19 C 1.38237 * 120.01313 * 0.26351 * 18 17 16 20 20 C 1.38338 * 119.98297 * 359.50743 * 19 18 17 21 21 Cl 1.73597 * 120.00852 * 180.25600 * 20 19 18 22 22 C 1.38189 * 119.99237 * 270.02509 * 16 15 13 23 23 C 1.47072 * 87.88134 * 333.10051 * 12 11 9 24 24 H 0.96999 * 119.99676 * 0.02562 * 1 2 3 25 25 H 0.96701 * 114.00391 * 313.20096 * 10 9 7 26 26 H 1.08996 * 113.47260 * 24.87588 * 11 9 7 27 27 H 1.09002 * 113.46506 * 254.43086 * 11 9 7 28 28 H 1.08995 * 109.47261 * 60.00531 * 15 13 12 29 29 H 1.08997 * 109.47352 * 300.00075 * 15 13 12 30 30 H 1.07997 * 119.98741 * 359.97438 * 17 16 15 31 31 H 1.08002 * 119.99032 * 179.97438 * 18 17 16 32 32 H 1.07995 * 120.00242 * 179.74655 * 19 18 17 33 33 H 1.08000 * 120.00840 * 359.97438 * 22 16 15 34 34 H 1.09002 * 113.46758 * 141.67836 * 23 12 11 35 35 H 1.09004 * 113.46689 * 272.11801 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.1900 -2.5422 -0.9557 11 6 2.1488 -3.7442 0.0005 12 7 1.2100 -4.3575 0.9520 13 6 0.8346 -5.6114 1.2734 14 8 1.3286 -6.5583 0.6991 15 6 -0.1992 -5.8366 2.3466 16 6 -0.4376 -7.3155 2.5120 17 6 0.3199 -8.0412 3.4126 18 6 0.1021 -9.3977 3.5644 19 6 -0.8695 -10.0306 2.8118 20 6 -1.6308 -9.3040 1.9140 21 17 -2.8557 -10.0968 0.9733 22 6 -1.4128 -7.9459 1.7629 23 6 0.8561 -3.0000 1.3939 24 1 -0.4849 0.8401 -0.0004 25 1 -0.3737 -1.7565 -0.9535 26 1 3.1384 -3.5658 0.4211 27 1 2.1849 -4.2532 -0.9627 28 1 -1.1308 -5.3477 2.0621 29 1 0.1575 -5.4190 3.2881 30 1 1.0825 -7.5482 3.9971 31 1 0.6944 -9.9642 4.2679 32 1 -1.0367 -11.0912 2.9276 33 1 -2.0044 -7.3789 1.0594 34 1 -0.2046 -2.8775 1.6131 35 1 1.4980 -2.6214 2.1894 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186833546.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:27 Heat of formation + Delta-G solvation = -49.021371 kcal Electronic energy + Delta-G solvation = -20720.010685 eV Core-core repulsion = 17323.315923 eV Total energy + Delta-G solvation = -3396.694763 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.41188 -40.35271 -38.94528 -37.45163 -35.87254 -34.11803 -33.88895 -31.72393 -30.81304 -28.63389 -26.90267 -26.66755 -23.68022 -22.97791 -21.73281 -19.93836 -19.25360 -18.02696 -17.90157 -17.18560 -16.94970 -16.64803 -16.29562 -16.10376 -15.88220 -15.03789 -14.71604 -14.58892 -14.44754 -14.10690 -13.99055 -13.75068 -13.39420 -13.09832 -12.78818 -12.75494 -12.51064 -12.42071 -12.32100 -12.21733 -12.15641 -11.82978 -11.40607 -10.95773 -10.64445 -10.24038 -9.88874 -9.66633 -9.56805 -8.26589 -6.43646 0.15594 0.26203 1.11301 1.49477 1.51919 1.58765 1.63661 1.97416 2.41618 2.66510 2.95898 3.54570 3.59200 3.81251 3.86015 4.05129 4.16803 4.22785 4.28761 4.44092 4.48181 4.56302 4.63211 4.77073 4.80451 4.88640 4.95387 4.98899 5.21506 5.25860 5.33361 5.49239 5.73732 5.83062 5.92093 6.62003 6.89660 7.14749 7.30594 7.49988 8.79261 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.032461 B = 0.003111 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.368656 B = 8998.810298 C = 9366.199127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.033 3.967 3 Si 0.970 3.030 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.554 4.554 8 H 0.074 0.926 9 C 0.217 3.783 10 O -0.588 6.588 11 C 0.105 3.895 12 N -0.638 5.638 13 C 0.531 3.469 14 O -0.591 6.591 15 C -0.088 4.088 16 C -0.063 4.063 17 C -0.109 4.109 18 C -0.103 4.103 19 C -0.115 4.115 20 C -0.046 4.046 21 Cl -0.075 7.075 22 C -0.116 4.116 23 C 0.087 3.913 24 H 0.277 0.723 25 H 0.389 0.611 26 H 0.104 0.896 27 H 0.048 0.952 28 H 0.110 0.890 29 H 0.130 0.870 30 H 0.144 0.856 31 H 0.165 0.835 32 H 0.154 0.846 33 H 0.123 0.877 34 H 0.066 0.934 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.506 -12.344 10.063 16.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.167 4.167 3 Si 0.795 3.205 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.592 4.592 8 H 0.092 0.908 9 C 0.175 3.825 10 O -0.401 6.401 11 C -0.017 4.017 12 N -0.371 5.371 13 C 0.323 3.677 14 O -0.473 6.473 15 C -0.127 4.127 16 C -0.064 4.064 17 C -0.127 4.127 18 C -0.121 4.121 19 C -0.134 4.134 20 C -0.073 4.073 21 Cl -0.046 7.046 22 C -0.135 4.135 23 C -0.036 4.036 24 H 0.087 0.913 25 H 0.245 0.755 26 H 0.122 0.878 27 H 0.067 0.933 28 H 0.128 0.872 29 H 0.148 0.852 30 H 0.162 0.838 31 H 0.183 0.817 32 H 0.172 0.828 33 H 0.141 0.859 34 H 0.085 0.915 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.345 -13.574 9.606 16.793 hybrid contribution -0.155 1.438 -0.449 1.515 sum -2.500 -12.135 9.157 15.407 Atomic orbital electron populations 1.69314 1.07141 1.29028 1.50267 1.25747 0.95753 1.02619 0.92592 0.85424 0.78251 0.77935 0.78926 1.20170 1.20866 1.19019 1.21636 0.94203 0.90554 1.52767 0.90758 1.19788 0.85504 0.91633 0.85557 1.86035 1.45564 1.48127 1.60384 1.23327 0.94764 0.91485 0.92152 1.49779 1.42159 1.05191 1.39972 1.20656 0.83160 0.80034 0.83851 1.90643 1.59090 1.41470 1.56131 1.20601 0.98964 0.94114 0.99006 1.19382 0.95799 0.94580 0.96633 1.21419 0.98382 0.95057 0.97819 1.21450 0.97187 0.94164 0.99257 1.21360 0.95535 1.01236 0.95234 1.21010 0.95222 0.93002 0.98024 1.98355 1.53931 1.80102 1.72216 1.20991 0.99293 0.93468 0.99711 1.23967 1.00811 0.77441 1.01335 0.91336 0.75473 0.87846 0.93338 0.87174 0.85195 0.83833 0.81730 0.82806 0.85868 0.91513 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.00 11.01 21.44 0.24 -44.77 16 2 C 0.03 1.60 5.40 84.65 0.46 2.05 16 3 Si 0.97 38.17 29.54 68.60 2.03 40.20 16 4 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 7 C -0.55 -26.79 8.69 25.60 0.22 -26.57 16 8 H 0.07 3.47 7.81 -2.91 -0.02 3.44 16 9 C 0.22 10.12 1.57 -11.29 -0.02 10.11 16 10 O -0.59 -30.36 13.53 -148.98 -2.02 -32.37 16 11 C 0.11 4.54 8.03 83.17 0.67 5.20 16 12 N -0.64 -25.70 3.69 -859.30 -3.17 -28.87 16 13 C 0.53 20.42 8.07 87.66 0.71 21.13 16 14 O -0.59 -26.80 16.81 -3.02 -0.05 -26.85 16 15 C -0.09 -2.45 5.66 29.10 0.16 -2.29 16 16 C -0.06 -1.72 4.37 -19.87 -0.09 -1.81 16 17 C -0.11 -2.46 9.70 22.27 0.22 -2.25 16 18 C -0.10 -1.94 10.05 22.27 0.22 -1.71 16 19 C -0.12 -2.36 9.83 22.29 0.22 -2.14 16 20 C -0.05 -1.16 6.32 22.33 0.14 -1.02 16 21 Cl -0.07 -1.76 28.96 -2.72 -0.08 -1.84 16 22 C -0.12 -3.25 9.49 22.29 0.21 -3.04 16 23 C 0.09 3.48 7.82 83.09 0.65 4.13 16 24 H 0.28 12.91 8.31 -92.71 -0.77 12.14 16 25 H 0.39 20.30 6.33 -74.06 -0.47 19.84 16 26 H 0.10 3.99 8.10 -2.39 -0.02 3.97 16 27 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.11 2.92 8.09 -2.39 -0.02 2.90 16 29 H 0.13 2.86 8.08 -2.39 -0.02 2.84 16 30 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 31 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.12 3.51 8.06 -2.91 -0.02 3.49 16 34 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.10 3.58 8.10 -2.38 -0.02 3.56 16 Total: -1.00 -60.13 323.20 1.37 -58.76 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: 0.65 Total: 33.93 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 3.78 Total: 1.81 kcal Atomic # 7 Polarization: -70.70 SS G_CDS: -2.94 Total: -73.64 kcal Atomic # 8 Polarization: -57.16 SS G_CDS: -2.07 Total: -59.23 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.08 Total: -1.84 kcal Total: -60.13 1.37 -58.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186833546.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.743 kcal (2) G-P(sol) polarization free energy of solvation -60.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds