Wall clock time and date at job start Tue Mar 31 2020 06:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99881 * 2 1 4 4 H 1.48502 * 109.47432 * 89.99897 * 3 2 1 5 5 H 1.48509 * 109.46693 * 209.99668 * 3 2 1 6 6 H 1.48498 * 109.47418 * 329.99000 * 3 2 1 7 7 C 1.37873 * 119.99596 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00126 * 358.18208 * 7 2 1 9 9 C 1.50710 * 119.99460 * 178.17803 * 7 2 1 10 10 O 1.42893 * 112.94591 * 55.35386 * 9 7 2 11 11 C 1.53943 * 113.73969 * 283.75965 * 9 7 2 12 12 N 1.47812 * 86.03674 * 222.08975 * 11 9 7 13 13 C 1.34778 * 134.45776 * 204.65312 * 12 11 9 14 14 O 1.21274 * 120.00369 * 179.86575 * 13 12 11 15 15 C 1.50706 * 119.99649 * 359.86136 * 13 12 11 16 16 C 1.50707 * 109.46889 * 180.02562 * 15 13 12 17 17 C 1.38236 * 120.00403 * 264.72069 * 16 15 13 18 18 C 1.38223 * 120.00801 * 179.76793 * 17 16 15 19 19 C 1.38258 * 120.02857 * 0.51270 * 18 17 16 20 20 C 1.38193 * 120.01432 * 359.73825 * 19 18 17 21 21 C 1.38331 * 120.00672 * 84.99854 * 16 15 13 22 22 Cl 1.73602 * 120.01444 * 359.95618 * 21 16 15 23 23 C 1.47577 * 91.05143 * 24.54953 * 12 11 9 24 24 H 0.96997 * 120.00619 * 178.28251 * 1 2 3 25 25 H 0.96694 * 114.00533 * 294.08866 * 10 9 7 26 26 H 1.09000 * 113.77482 * 336.35033 * 11 9 7 27 27 H 1.09001 * 113.76770 * 107.74988 * 11 9 7 28 28 H 1.08997 * 109.47267 * 300.00007 * 15 13 12 29 29 H 1.08999 * 109.47490 * 60.00211 * 15 13 12 30 30 H 1.08002 * 119.99542 * 0.02562 * 17 16 15 31 31 H 1.08001 * 119.98028 * 180.27519 * 18 17 16 32 32 H 1.08003 * 119.99006 * 179.77065 * 19 18 17 33 33 H 1.07997 * 120.00577 * 179.97438 * 20 19 18 34 34 H 1.08996 * 113.77269 * 221.15139 * 23 12 11 35 35 H 1.09002 * 113.76345 * 89.75428 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5468 1.4401 -0.7000 6 1 1.4467 2.6526 -0.7002 7 6 2.0044 -1.1941 0.0005 8 1 1.4648 -2.1290 0.0306 9 6 3.5110 -1.1944 -0.0410 10 8 4.0975 -0.4288 1.0134 11 6 4.0927 -0.8817 -1.4315 12 7 5.0610 -1.9642 -1.1567 13 6 6.3011 -2.2556 -1.5968 14 8 6.8757 -3.2402 -1.1829 15 6 6.9737 -1.3580 -2.6033 16 6 8.3412 -1.9025 -2.9271 17 6 9.4521 -1.4236 -2.2582 18 6 10.7057 -1.9263 -2.5517 19 6 10.8507 -2.9006 -3.5219 20 6 9.7415 -3.3764 -4.1950 21 6 8.4856 -2.8773 -3.8979 22 17 7.0916 -3.4748 -4.7427 23 6 4.1261 -2.5960 -0.2055 24 1 -0.4851 -0.8396 -0.0252 25 1 3.9174 0.5196 0.9581 26 1 3.4103 -1.1009 -2.2527 27 1 4.5463 0.1066 -1.5059 28 1 6.3741 -1.3184 -3.5127 29 1 7.0706 -0.3549 -2.1880 30 1 9.3399 -0.6595 -1.5031 31 1 11.5728 -1.5550 -2.0257 32 1 11.8310 -3.2903 -3.7534 33 1 9.8550 -4.1372 -4.9530 34 1 4.6062 -2.9738 0.6971 35 1 3.4534 -3.3197 -0.6659 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186844682.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:57 Heat of formation + Delta-G solvation = -43.691723 kcal Electronic energy + Delta-G solvation = -21182.359545 eV Core-core repulsion = 17785.895893 eV Total energy + Delta-G solvation = -3396.463652 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.51615 -40.41114 -39.03016 -37.43955 -36.11213 -34.66225 -33.98490 -31.67935 -30.85358 -28.65438 -27.19540 -26.47080 -23.68059 -22.89074 -21.71338 -20.19913 -19.89929 -18.15581 -18.08126 -17.70261 -17.14991 -16.77961 -16.42368 -16.07997 -15.74059 -15.12420 -14.80147 -14.78660 -14.45552 -14.32749 -13.94699 -13.90421 -13.76029 -13.12942 -13.08148 -12.63110 -12.54818 -12.48538 -12.22604 -12.07390 -11.74030 -11.67656 -11.31668 -11.11378 -10.83067 -10.49178 -9.87145 -9.69825 -9.63090 -8.80238 -6.59585 0.16618 0.28915 1.15023 1.37293 1.49839 1.58600 1.64794 1.86404 2.43739 2.67466 2.84640 3.30078 3.52735 3.65407 3.76526 3.78847 4.06420 4.23611 4.33710 4.36221 4.39932 4.44648 4.56030 4.59560 4.63556 4.72674 4.80611 4.90641 4.97894 5.26433 5.38867 5.46514 5.61259 5.87759 5.90591 6.38360 6.70729 6.79864 7.08764 7.27298 8.54056 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.026738 B = 0.004104 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.963257 B = 6821.557501 C = 7138.756399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.012 4.012 3 Si 1.071 2.929 4 H -0.260 1.260 5 H -0.224 1.224 6 H -0.285 1.285 7 C -0.614 4.614 8 H 0.033 0.967 9 C 0.189 3.811 10 O -0.562 6.562 11 C 0.074 3.926 12 N -0.637 5.637 13 C 0.534 3.466 14 O -0.582 6.582 15 C -0.097 4.097 16 C -0.075 4.075 17 C -0.108 4.108 18 C -0.114 4.114 19 C -0.107 4.107 20 C -0.121 4.121 21 C -0.042 4.042 22 Cl -0.083 7.083 23 C 0.123 3.877 24 H 0.257 0.743 25 H 0.363 0.637 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.128 0.872 30 H 0.143 0.857 31 H 0.159 0.841 32 H 0.163 0.837 33 H 0.146 0.854 34 H 0.065 0.935 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.075 1.266 -9.695 23.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.891 3.109 4 H -0.185 1.185 5 H -0.148 1.148 6 H -0.211 1.211 7 C -0.652 4.652 8 H 0.051 0.949 9 C 0.148 3.852 10 O -0.373 6.373 11 C -0.049 4.049 12 N -0.371 5.371 13 C 0.325 3.675 14 O -0.463 6.463 15 C -0.136 4.136 16 C -0.076 4.076 17 C -0.126 4.126 18 C -0.132 4.132 19 C -0.125 4.125 20 C -0.140 4.140 21 C -0.068 4.068 22 Cl -0.054 7.054 23 C 0.000 4.000 24 H 0.066 0.934 25 H 0.215 0.785 26 H 0.117 0.883 27 H 0.121 0.879 28 H 0.130 0.870 29 H 0.146 0.854 30 H 0.161 0.839 31 H 0.176 0.824 32 H 0.181 0.819 33 H 0.164 0.836 34 H 0.084 0.916 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 21.446 1.676 -9.433 23.489 hybrid contribution -1.299 -1.866 -0.058 2.274 sum 20.148 -0.190 -9.491 22.272 Atomic orbital electron populations 1.70916 1.08156 1.29990 1.47096 1.27375 0.96298 1.06519 0.91044 0.83893 0.76103 0.71534 0.79361 1.18517 1.14798 1.21099 1.22390 0.91260 0.94796 1.56738 0.94884 1.20505 0.90560 0.89731 0.84427 1.86463 1.77395 1.22001 1.51466 1.24596 0.88529 0.91421 1.00324 1.50187 1.13599 1.29202 1.44125 1.20638 0.79850 0.85508 0.81514 1.90646 1.64946 1.30451 1.60279 1.20676 0.93563 1.00132 0.99233 1.19333 0.95118 0.96971 0.96205 1.21306 0.91925 1.00577 0.98755 1.21607 0.97684 0.96448 0.97451 1.21518 0.99201 0.96427 0.95335 1.21312 0.90376 1.00767 1.01499 1.21047 0.88967 0.98811 0.98014 1.98357 1.42885 1.87374 1.76776 1.23142 0.88647 0.96521 0.91696 0.93417 0.78550 0.88346 0.87892 0.86953 0.85369 0.83878 0.82354 0.81929 0.83586 0.91624 0.89318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.00 13.70 21.45 0.29 -53.71 16 2 C -0.01 -0.66 5.47 84.65 0.46 -0.19 16 3 Si 1.07 41.79 24.78 68.60 1.70 43.49 16 4 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 5 H -0.22 -6.87 4.72 99.48 0.47 -6.40 16 6 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.61 -32.21 9.05 25.60 0.23 -31.98 16 8 H 0.03 1.92 8.04 -2.91 -0.02 1.90 16 9 C 0.19 8.30 1.06 -10.88 -0.01 8.29 16 10 O -0.56 -24.39 13.26 -148.98 -1.98 -26.37 16 11 C 0.07 2.67 6.87 86.44 0.59 3.26 16 12 N -0.64 -24.36 3.61 -839.66 -3.03 -27.39 16 13 C 0.53 19.52 8.05 87.66 0.71 20.22 16 14 O -0.58 -25.29 16.76 -3.01 -0.05 -25.34 16 15 C -0.10 -2.62 5.09 29.11 0.15 -2.47 16 16 C -0.08 -1.96 4.38 -19.84 -0.09 -2.04 16 17 C -0.11 -2.30 9.68 22.27 0.22 -2.09 16 18 C -0.11 -1.91 10.05 22.27 0.22 -1.69 16 19 C -0.11 -1.73 10.05 22.26 0.22 -1.51 16 20 C -0.12 -2.49 9.83 22.29 0.22 -2.27 16 21 C -0.04 -1.09 6.31 22.32 0.14 -0.94 16 22 Cl -0.08 -2.25 27.40 -2.72 -0.07 -2.32 16 23 C 0.12 5.22 8.23 86.49 0.71 5.93 16 24 H 0.26 15.28 8.71 -92.71 -0.81 14.47 16 25 H 0.36 13.70 4.32 -74.06 -0.32 13.38 16 26 H 0.10 3.50 8.09 -2.39 -0.02 3.48 16 27 H 0.10 3.12 6.57 -2.39 -0.02 3.10 16 28 H 0.11 2.83 7.12 -2.39 -0.02 2.82 16 29 H 0.13 2.77 8.05 -2.39 -0.02 2.75 16 30 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 31 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 32 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 34 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.09 3.72 8.09 -2.39 -0.02 3.70 16 Total: -1.00 -69.70 311.92 1.17 -68.53 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: 0.53 Total: 30.58 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 3.78 Total: -7.47 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -2.74 Total: -81.10 kcal Atomic # 8 Polarization: -49.68 SS G_CDS: -2.03 Total: -51.70 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 1.70 Total: 43.49 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -0.07 Total: -2.32 kcal Total: -69.70 1.17 -68.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186844682.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.837 kcal (2) G-P(sol) polarization free energy of solvation -69.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds