Wall clock time and date at job start Tue Mar 31 2020 06:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86799 * 120.00294 * 2 1 4 4 H 1.48502 * 109.47179 * 264.99350 * 3 2 1 5 5 H 1.48496 * 109.47236 * 144.98795 * 3 2 1 6 6 H 1.48508 * 109.46905 * 24.99244 * 3 2 1 7 7 C 1.40050 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00068 * 186.65121 * 7 2 1 9 9 C 1.46382 * 119.99844 * 6.66187 * 7 2 1 10 10 O 1.21682 * 119.99861 * 8.46462 * 9 7 2 11 11 N 1.34780 * 119.99638 * 188.46710 * 9 7 2 12 12 C 1.47152 * 120.97652 * 174.77253 * 11 9 7 13 13 C 1.52882 * 108.60332 * 230.50128 * 12 11 9 14 14 O 1.42966 * 109.29530 * 307.93381 * 13 12 11 15 15 C 1.42958 * 114.16718 * 62.45386 * 14 13 12 16 16 H 1.09008 * 109.51310 * 57.33817 * 15 14 13 17 17 C 1.50696 * 109.51351 * 177.49420 * 15 14 13 18 18 C 1.38273 * 119.99123 * 219.74622 * 17 15 14 19 19 C 1.38220 * 120.02266 * 180.02562 * 18 17 15 20 20 C 1.38234 * 120.01714 * 359.97438 * 19 18 17 21 21 C 1.38332 * 119.98304 * 0.02562 * 20 19 18 22 22 Cl 1.73603 * 120.01019 * 179.97438 * 21 20 19 23 23 C 1.38189 * 119.99781 * 39.47211 * 17 15 14 24 24 C 1.47149 * 120.98376 * 355.05239 * 11 9 7 25 25 H 0.97002 * 120.00132 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.68301 * 350.27687 * 12 11 9 27 27 H 1.09000 * 109.68257 * 110.83705 * 12 11 9 28 28 H 1.08997 * 109.58246 * 187.92507 * 13 12 11 29 29 H 1.08996 * 109.41251 * 67.84061 * 13 12 11 30 30 H 1.07989 * 119.98962 * 359.97438 * 18 17 15 31 31 H 1.08004 * 119.99353 * 180.02562 * 19 18 17 32 32 H 1.07999 * 120.01039 * 180.02562 * 20 19 18 33 33 H 1.08007 * 120.00221 * 0.02562 * 23 17 15 34 34 H 1.08998 * 109.67927 * 249.16831 * 24 11 9 35 35 H 1.09001 * 109.68304 * 9.68301 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.5941 1.9853 -1.3947 5 1 3.4813 1.4730 0.8033 6 1 1.3893 2.6809 0.5916 7 6 2.0069 -1.2129 0.0005 8 1 3.0814 -1.2160 0.1089 9 6 1.2824 -2.4763 -0.1460 10 8 0.0972 -2.4696 -0.4216 11 7 1.9280 -3.6471 0.0245 12 6 1.1993 -4.9252 -0.0046 13 6 1.5810 -5.7326 1.2362 14 8 3.0054 -5.8152 1.3264 15 6 3.6560 -4.5522 1.4850 16 1 3.2705 -4.0532 2.3742 17 6 5.1407 -4.7655 1.6301 18 6 5.8629 -4.0073 2.5331 19 6 7.2249 -4.2020 2.6662 20 6 7.8656 -5.1552 1.8971 21 6 7.1435 -5.9140 0.9935 22 17 7.9476 -7.1109 0.0268 23 6 5.7792 -5.7226 0.8647 24 6 3.3815 -3.6846 0.2514 25 1 -0.4850 0.8401 -0.0004 26 1 0.1259 -4.7359 -0.0021 27 1 1.4722 -5.4830 -0.9004 28 1 1.1621 -6.7362 1.1620 29 1 1.1879 -5.2388 2.1248 30 1 5.3629 -3.2622 3.1339 31 1 7.7885 -3.6098 3.3720 32 1 8.9297 -5.3076 2.0015 33 1 5.2143 -6.3175 0.1623 34 1 3.8777 -4.1153 -0.6182 35 1 3.7525 -2.6740 0.4227 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187536539.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:44 Heat of formation + Delta-G solvation = -57.559101 kcal Electronic energy + Delta-G solvation = -21290.593848 eV Core-core repulsion = 17893.528861 eV Total energy + Delta-G solvation = -3397.064986 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.93159 -38.62524 -36.78612 -36.44820 -33.45737 -32.87878 -32.38434 -30.79125 -29.63330 -27.13949 -25.93069 -23.93304 -22.86863 -22.08963 -20.77157 -19.14679 -17.37610 -16.62023 -16.23723 -15.97468 -15.57916 -15.16204 -14.61707 -14.54822 -14.24326 -14.22313 -13.73442 -13.50135 -13.46809 -12.78663 -12.33372 -11.80923 -11.77221 -11.58206 -11.50629 -11.46728 -11.22047 -11.05324 -11.00337 -10.80244 -10.33815 -10.30685 -10.10415 -9.62814 -8.97896 -8.91943 -8.76016 -7.69931 -7.32224 -6.32406 -4.74135 1.07155 1.20936 2.05866 3.08827 3.15812 3.17536 3.49648 3.93427 3.99446 4.33638 4.45751 4.72479 4.83695 5.04569 5.18216 5.28538 5.34044 5.47247 5.47676 5.58146 5.59695 5.77138 5.86735 5.90098 6.01693 6.15464 6.23090 6.26504 6.34035 6.47471 6.53947 6.71006 7.35330 7.38641 7.44483 7.99816 8.22330 8.92552 9.28764 10.45878 10.63949 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.017189 B = 0.004478 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.534027 B = 6251.720870 C = 7251.341068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.090 3.910 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.264 1.264 6 H -0.279 1.279 7 C -0.547 4.547 8 H 0.073 0.927 9 C 0.562 3.438 10 O -0.577 6.577 11 N -0.644 5.644 12 C 0.084 3.916 13 C 0.052 3.948 14 O -0.381 6.381 15 C 0.115 3.885 16 H 0.074 0.926 17 C -0.058 4.058 18 C -0.102 4.102 19 C -0.109 4.109 20 C -0.114 4.114 21 C -0.038 4.038 22 Cl -0.077 7.077 23 C -0.082 4.082 24 C 0.103 3.897 25 H 0.271 0.729 26 H 0.092 0.908 27 H 0.050 0.950 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.052 0.948 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.971 -9.333 5.233 17.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.130 4.130 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.189 1.189 6 H -0.204 1.204 7 C -0.583 4.583 8 H 0.091 0.909 9 C 0.369 3.631 10 O -0.459 6.459 11 N -0.383 5.383 12 C -0.040 4.040 13 C -0.025 4.025 14 O -0.301 6.301 15 C 0.056 3.944 16 H 0.092 0.908 17 C -0.059 4.059 18 C -0.120 4.120 19 C -0.127 4.127 20 C -0.133 4.133 21 C -0.064 4.064 22 Cl -0.048 7.048 23 C -0.101 4.101 24 C -0.022 4.022 25 H 0.081 0.919 26 H 0.111 0.889 27 H 0.068 0.932 28 H 0.114 0.886 29 H 0.070 0.930 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.156 0.844 34 H 0.070 0.930 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 13.266 -9.479 4.970 17.046 hybrid contribution 0.452 0.845 -0.089 0.962 sum 13.718 -8.634 4.881 16.928 Atomic orbital electron populations 1.69966 1.07176 1.27661 1.34842 1.25702 0.94587 1.00322 0.92381 0.86402 0.80074 0.81231 0.79200 1.19499 1.18871 1.20427 1.20918 0.94182 0.89345 1.53850 0.90893 1.18276 0.86439 0.81930 0.76502 1.90588 1.16445 1.85969 1.52905 1.48314 1.06012 1.05663 1.78340 1.21745 0.99523 0.86314 0.96390 1.22921 0.80650 1.00726 0.98233 1.87849 1.19525 1.28355 1.94338 1.21345 0.87926 0.85737 0.99347 0.90813 1.19594 0.94457 0.95956 0.95910 1.21158 0.94243 0.99154 0.97457 1.21041 0.94408 0.97849 0.99420 1.21031 1.00191 0.96180 0.95872 1.20907 0.93114 0.95122 0.97278 1.98360 1.79786 1.56063 1.70630 1.20921 0.91869 0.97816 0.99494 1.22039 0.83996 1.01164 0.95011 0.91867 0.88932 0.93156 0.88569 0.92984 0.84938 0.84964 0.85184 0.84425 0.92965 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.43 11.92 55.55 0.66 -21.76 16 2 C 0.09 2.44 5.48 -17.37 -0.10 2.35 16 3 Si 0.91 19.51 29.56 -169.99 -5.03 14.48 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 7 C -0.55 -14.89 8.85 -35.63 -0.32 -15.20 16 8 H 0.07 1.80 5.74 -52.49 -0.30 1.50 16 9 C 0.56 15.69 7.60 -12.98 -0.10 15.60 16 10 O -0.58 -18.31 14.63 5.20 0.08 -18.24 16 11 N -0.64 -14.50 3.03 -174.19 -0.53 -15.03 16 12 C 0.08 1.63 6.59 -3.75 -0.02 1.61 16 13 C 0.05 0.83 6.97 37.10 0.26 1.09 16 14 O -0.38 -6.23 9.69 -35.23 -0.34 -6.57 16 15 C 0.12 1.84 2.98 -27.73 -0.08 1.76 16 16 H 0.07 1.20 8.01 -51.92 -0.42 0.79 16 17 C -0.06 -0.80 4.98 -104.63 -0.52 -1.32 16 18 C -0.10 -1.21 9.67 -39.58 -0.38 -1.59 16 19 C -0.11 -1.10 10.04 -39.59 -0.40 -1.50 16 20 C -0.11 -1.20 9.83 -39.55 -0.39 -1.59 16 21 C -0.04 -0.46 6.32 -39.50 -0.25 -0.71 16 22 Cl -0.08 -0.87 28.96 -51.86 -1.50 -2.37 16 23 C -0.08 -1.10 9.14 -39.55 -0.36 -1.47 16 24 C 0.10 1.92 5.83 -3.54 -0.02 1.90 16 25 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 26 H 0.09 1.95 7.12 -51.93 -0.37 1.58 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.13 1.40 8.04 -52.49 -0.42 0.98 16 31 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 32 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.14 1.90 7.76 -52.48 -0.41 1.49 16 34 H 0.05 0.94 8.13 -51.93 -0.42 0.52 16 35 H 0.10 1.98 5.41 -51.93 -0.28 1.70 16 LS Contribution 312.45 15.07 4.71 4.71 Total: -1.00 -32.88 312.45 -8.50 -41.38 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -3.87 Total: 2.49 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -2.68 Total: 0.92 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.14 Total: -36.79 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.27 Total: -24.81 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.50 Total: -2.37 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.88 -8.50 -41.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187536539.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.181 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds