Wall clock time and date at job start Tue Mar 31 2020 06:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86799 * 120.00294 * 2 1 4 4 H 1.48502 * 109.47179 * 264.99350 * 3 2 1 5 5 H 1.48496 * 109.47236 * 144.98795 * 3 2 1 6 6 H 1.48508 * 109.46905 * 24.99244 * 3 2 1 7 7 C 1.40050 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00068 * 186.65121 * 7 2 1 9 9 C 1.46382 * 119.99844 * 6.66187 * 7 2 1 10 10 O 1.21682 * 119.99861 * 8.46462 * 9 7 2 11 11 N 1.34780 * 119.99638 * 188.46710 * 9 7 2 12 12 C 1.47152 * 120.97652 * 174.77253 * 11 9 7 13 13 C 1.52882 * 108.60332 * 230.50128 * 12 11 9 14 14 O 1.42966 * 109.29530 * 307.93381 * 13 12 11 15 15 C 1.42958 * 114.16718 * 62.45386 * 14 13 12 16 16 H 1.09008 * 109.51310 * 57.33817 * 15 14 13 17 17 C 1.50696 * 109.51351 * 177.49420 * 15 14 13 18 18 C 1.38273 * 119.99123 * 219.74622 * 17 15 14 19 19 C 1.38220 * 120.02266 * 180.02562 * 18 17 15 20 20 C 1.38234 * 120.01714 * 359.97438 * 19 18 17 21 21 C 1.38332 * 119.98304 * 0.02562 * 20 19 18 22 22 Cl 1.73603 * 120.01019 * 179.97438 * 21 20 19 23 23 C 1.38189 * 119.99781 * 39.47211 * 17 15 14 24 24 C 1.47149 * 120.98376 * 355.05239 * 11 9 7 25 25 H 0.97002 * 120.00132 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.68301 * 350.27687 * 12 11 9 27 27 H 1.09000 * 109.68257 * 110.83705 * 12 11 9 28 28 H 1.08997 * 109.58246 * 187.92507 * 13 12 11 29 29 H 1.08996 * 109.41251 * 67.84061 * 13 12 11 30 30 H 1.07989 * 119.98962 * 359.97438 * 18 17 15 31 31 H 1.08004 * 119.99353 * 180.02562 * 19 18 17 32 32 H 1.07999 * 120.01039 * 180.02562 * 20 19 18 33 33 H 1.08007 * 120.00221 * 0.02562 * 23 17 15 34 34 H 1.08998 * 109.67927 * 249.16831 * 24 11 9 35 35 H 1.09001 * 109.68304 * 9.68301 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.5941 1.9853 -1.3947 5 1 3.4813 1.4730 0.8033 6 1 1.3893 2.6809 0.5916 7 6 2.0069 -1.2129 0.0005 8 1 3.0814 -1.2160 0.1089 9 6 1.2824 -2.4763 -0.1460 10 8 0.0972 -2.4696 -0.4216 11 7 1.9280 -3.6471 0.0245 12 6 1.1993 -4.9252 -0.0046 13 6 1.5810 -5.7326 1.2362 14 8 3.0054 -5.8152 1.3264 15 6 3.6560 -4.5522 1.4850 16 1 3.2705 -4.0532 2.3742 17 6 5.1407 -4.7655 1.6301 18 6 5.8629 -4.0073 2.5331 19 6 7.2249 -4.2020 2.6662 20 6 7.8656 -5.1552 1.8971 21 6 7.1435 -5.9140 0.9935 22 17 7.9476 -7.1109 0.0268 23 6 5.7792 -5.7226 0.8647 24 6 3.3815 -3.6846 0.2514 25 1 -0.4850 0.8401 -0.0004 26 1 0.1259 -4.7359 -0.0021 27 1 1.4722 -5.4830 -0.9004 28 1 1.1621 -6.7362 1.1620 29 1 1.1879 -5.2388 2.1248 30 1 5.3629 -3.2622 3.1339 31 1 7.7885 -3.6098 3.3720 32 1 8.9297 -5.3076 2.0015 33 1 5.2143 -6.3175 0.1623 34 1 3.8777 -4.1153 -0.6182 35 1 3.7525 -2.6740 0.4227 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187536539.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:43 Heat of formation + Delta-G solvation = -78.407726 kcal Electronic energy + Delta-G solvation = -21291.497912 eV Core-core repulsion = 17893.528861 eV Total energy + Delta-G solvation = -3397.969051 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.17644 -39.90830 -38.55447 -37.38627 -35.25939 -34.68414 -33.83284 -31.68797 -30.95935 -28.85977 -27.69132 -25.29501 -23.99976 -23.34148 -22.01639 -20.93305 -18.80065 -18.09038 -17.79698 -17.48893 -16.70589 -16.55549 -16.14413 -16.01003 -15.71887 -15.46394 -15.17996 -14.58838 -14.54830 -14.33243 -13.72553 -13.70387 -13.34258 -13.09515 -12.78695 -12.69917 -12.46394 -12.44745 -12.23053 -12.16416 -12.02759 -11.77151 -11.59615 -11.08362 -10.94074 -10.00171 -9.80048 -9.67840 -9.11506 -8.35973 -6.87740 0.15478 0.30424 1.16798 1.39378 1.41642 1.55658 2.20181 2.41021 2.46370 2.69970 2.78465 3.53112 3.69741 3.84278 3.96106 4.03335 4.09170 4.21055 4.31091 4.32018 4.43758 4.50570 4.59293 4.69575 4.75172 4.81469 4.95908 4.99201 5.25986 5.33822 5.37594 5.51836 5.62403 5.83275 6.03597 6.10700 6.27698 6.84018 7.30144 8.38482 8.61573 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.017189 B = 0.004478 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.534027 B = 6251.720870 C = 7251.341068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.033 3.967 3 Si 0.993 3.007 4 H -0.265 1.265 5 H -0.243 1.243 6 H -0.273 1.273 7 C -0.570 4.570 8 H 0.094 0.906 9 C 0.544 3.456 10 O -0.631 6.631 11 N -0.649 5.649 12 C 0.080 3.920 13 C 0.062 3.938 14 O -0.380 6.380 15 C 0.125 3.875 16 H 0.069 0.931 17 C -0.076 4.076 18 C -0.106 4.106 19 C -0.100 4.100 20 C -0.107 4.107 21 C -0.047 4.047 22 Cl -0.074 7.074 23 C -0.094 4.094 24 C 0.103 3.897 25 H 0.276 0.724 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.134 0.866 29 H 0.046 0.954 30 H 0.143 0.857 31 H 0.167 0.833 32 H 0.156 0.844 33 H 0.127 0.873 34 H 0.058 0.942 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.172 -9.031 6.426 20.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.182 4.182 3 Si 0.812 3.188 4 H -0.189 1.189 5 H -0.166 1.166 6 H -0.197 1.197 7 C -0.606 4.606 8 H 0.112 0.888 9 C 0.351 3.649 10 O -0.518 6.518 11 N -0.386 5.386 12 C -0.043 4.043 13 C -0.015 4.015 14 O -0.299 6.299 15 C 0.067 3.933 16 H 0.087 0.913 17 C -0.077 4.077 18 C -0.124 4.124 19 C -0.118 4.118 20 C -0.126 4.126 21 C -0.074 4.074 22 Cl -0.045 7.045 23 C -0.113 4.113 24 C -0.020 4.020 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.151 0.849 29 H 0.064 0.936 30 H 0.161 0.839 31 H 0.184 0.816 32 H 0.174 0.826 33 H 0.145 0.855 34 H 0.076 0.924 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 16.520 -9.236 6.179 19.909 hybrid contribution -0.494 0.648 -0.475 0.943 sum 16.026 -8.588 5.703 19.056 Atomic orbital electron populations 1.70133 1.09636 1.29224 1.36138 1.26950 0.95430 1.04856 0.90988 0.85099 0.78982 0.75085 0.79631 1.18940 1.16571 1.19735 1.21431 0.95373 0.89805 1.53948 0.88805 1.18685 0.86094 0.83859 0.76286 1.90534 1.18638 1.87282 1.55332 1.48170 1.07772 1.05463 1.77229 1.21921 0.97933 0.85553 0.98938 1.22915 0.80718 1.01962 0.95899 1.87874 1.19468 1.28504 1.94064 1.21198 0.89746 0.85014 0.97390 0.91340 1.19437 0.92949 0.97551 0.97759 1.21380 0.95177 0.98902 0.96969 1.21416 0.93695 0.97418 0.99230 1.21400 1.01423 0.95170 0.94601 1.21019 0.92788 0.95658 0.97892 1.98361 1.79503 1.55978 1.70644 1.20855 0.92660 0.98068 0.99711 1.22168 0.81440 1.01625 0.96817 0.91407 0.91404 0.91999 0.84853 0.93554 0.83892 0.81578 0.82640 0.85532 0.92361 0.88576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.54 11.92 21.84 0.26 -49.28 16 2 C 0.03 1.82 5.48 85.31 0.47 2.29 16 3 Si 0.99 39.72 29.56 68.60 2.03 41.74 16 4 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 5 H -0.24 -8.78 7.11 99.48 0.71 -8.07 16 6 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 7 C -0.57 -31.55 8.85 24.83 0.22 -31.33 16 8 H 0.09 4.62 5.74 -2.91 -0.02 4.60 16 9 C 0.54 31.57 7.60 86.36 0.66 32.23 16 10 O -0.63 -42.23 14.63 -4.29 -0.06 -42.29 16 11 N -0.65 -30.02 3.03 -823.23 -2.49 -32.51 16 12 C 0.08 3.17 6.59 86.22 0.57 3.74 16 13 C 0.06 1.94 6.97 71.94 0.50 2.44 16 14 O -0.38 -12.06 9.69 -148.98 -1.44 -13.51 16 15 C 0.13 3.93 2.98 29.95 0.09 4.02 16 16 H 0.07 2.21 8.01 -2.38 -0.02 2.19 16 17 C -0.08 -1.99 4.98 -19.87 -0.10 -2.09 16 18 C -0.11 -2.25 9.67 22.27 0.22 -2.03 16 19 C -0.10 -1.64 10.04 22.26 0.22 -1.41 16 20 C -0.11 -1.88 9.83 22.29 0.22 -1.66 16 21 C -0.05 -1.04 6.32 22.32 0.14 -0.89 16 22 Cl -0.07 -1.53 28.96 -2.72 -0.08 -1.61 16 23 C -0.09 -2.41 9.14 22.29 0.20 -2.20 16 24 C 0.10 3.86 5.83 86.35 0.50 4.36 16 25 H 0.28 15.06 8.29 -92.71 -0.77 14.29 16 26 H 0.07 3.02 7.12 -2.39 -0.02 3.00 16 27 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.13 3.17 8.14 -2.39 -0.02 3.15 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.14 2.67 8.04 -2.92 -0.02 2.64 16 31 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 32 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.13 3.43 7.76 -2.91 -0.02 3.41 16 34 H 0.06 2.10 8.13 -2.39 -0.02 2.08 16 35 H 0.10 3.69 5.41 -2.39 -0.01 3.68 16 Total: -1.00 -74.44 312.45 3.24 -71.20 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 1.12 Total: 18.81 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 3.91 Total: 7.45 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -2.23 Total: -81.80 kcal Atomic # 8 Polarization: -54.29 SS G_CDS: -1.51 Total: -55.79 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.74 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.08 Total: -1.61 kcal Total: -74.44 3.24 -71.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187536539.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.211 kcal (2) G-P(sol) polarization free energy of solvation -74.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds