Wall clock time and date at job start Tue Mar 31 2020 07:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38314 * 119.93711 * 2 1 4 4 C 1.38372 * 120.31749 * 179.97438 * 3 2 1 5 5 C 1.37939 * 120.18570 * 359.78949 * 4 3 2 6 6 C 1.39589 * 119.86364 * 0.48542 * 5 4 3 7 7 C 1.47769 * 120.15909 * 179.76673 * 6 5 4 8 8 O 1.21555 * 120.00183 * 204.86400 * 7 6 5 9 9 N 1.34778 * 119.99770 * 24.86717 * 7 6 5 10 10 C 1.47068 * 136.05652 * 4.85691 * 9 7 6 11 11 C 1.53751 * 87.88530 * 152.96775 * 10 9 7 12 12 O 1.42903 * 114.39454 * 272.67712 * 11 10 9 13 13 C 1.50700 * 114.26524 * 139.79677 * 11 10 9 14 14 H 1.08005 * 119.99613 * 266.46861 * 13 11 10 15 15 C 1.37873 * 120.00324 * 86.47574 * 13 11 10 16 16 N 1.31513 * 119.99889 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 120.00029 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47354 * 59.99798 * 17 15 13 19 19 H 1.48500 * 109.47008 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46973 * 299.99437 * 17 15 13 21 21 C 1.47060 * 136.06000 * 185.23587 * 9 7 6 22 22 C 1.38113 * 119.93593 * 180.02562 * 2 1 3 23 23 Cl 1.73604 * 120.09270 * 0.02562 * 22 2 1 24 24 H 1.08999 * 109.47068 * 269.97645 * 1 2 3 25 25 H 1.09000 * 109.47182 * 29.97363 * 1 2 3 26 26 H 1.09001 * 109.47143 * 149.97342 * 1 2 3 27 27 H 1.07995 * 119.83934 * 0.02562 * 3 2 1 28 28 H 1.08007 * 119.90782 * 180.02562 * 4 3 2 29 29 H 1.08000 * 120.07299 * 180.23542 * 5 4 3 30 30 H 1.08996 * 113.47095 * 267.70164 * 10 9 7 31 31 H 1.09004 * 113.46828 * 38.13577 * 10 9 7 32 32 H 0.96705 * 113.99581 * 273.58776 * 12 11 10 33 33 H 0.97008 * 119.99909 * 179.97438 * 16 15 13 34 34 H 1.09002 * 113.46239 * 321.86303 * 21 9 7 35 35 H 1.09006 * 113.47192 * 92.23767 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1986 0.0000 4 6 3.5809 1.2078 0.0005 5 6 4.2824 0.0201 0.0055 6 6 3.5936 -1.1940 -0.0004 7 6 4.3385 -2.4702 -0.0003 8 8 3.8219 -3.4755 -0.4475 9 7 5.5907 -2.5195 0.4956 10 6 6.4964 -1.5841 1.1795 11 6 7.1668 -2.8023 1.8358 12 8 6.5532 -3.2285 3.0540 13 6 8.6682 -2.7092 1.9259 14 1 9.2833 -3.1363 1.1477 15 6 9.2565 -2.0789 3.0018 16 7 8.5074 -1.5585 3.9492 17 14 11.1176 -1.9629 3.1130 18 1 11.6389 -1.2238 1.9353 19 1 11.4953 -1.2427 4.3556 20 1 11.6982 -3.3296 3.1365 21 6 6.6552 -3.5302 0.5851 22 6 2.1962 -1.1969 -0.0005 23 17 1.3289 -2.7008 -0.0019 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5143 27 1 1.6536 2.1317 0.0004 28 1 4.1132 2.1476 0.0009 29 1 5.3623 0.0294 0.0097 30 1 7.1532 -1.0408 0.5002 31 1 5.9899 -0.9304 1.8896 32 1 6.8777 -2.7680 3.8399 33 1 8.9214 -1.1153 4.7064 34 1 6.2840 -4.5346 0.7888 35 1 7.3534 -3.5007 -0.2515 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189547093.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:31 Heat of formation + Delta-G solvation = -22.079511 kcal Electronic energy + Delta-G solvation = -21379.352598 eV Core-core repulsion = 17983.826122 eV Total energy + Delta-G solvation = -3395.526476 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.11527 -38.88573 -37.16611 -36.19811 -34.06700 -32.95947 -32.21181 -30.94887 -28.69014 -27.02960 -25.56009 -25.13283 -23.22754 -21.81003 -20.12737 -18.60104 -17.48954 -16.70991 -16.36089 -15.91597 -15.35575 -15.06825 -14.58940 -14.33415 -14.20815 -14.02394 -13.47034 -13.18050 -12.69339 -12.55091 -12.41459 -12.32674 -11.95980 -11.68038 -11.59128 -11.44632 -11.34554 -11.06799 -11.03035 -10.62732 -10.51233 -10.29225 -9.58519 -9.16204 -8.87892 -8.79688 -8.63683 -8.38936 -7.84230 -6.42735 -4.53603 0.88047 1.16596 2.31055 3.12369 3.14125 3.20405 3.22330 3.46175 3.87376 4.15617 4.63535 4.67037 4.80387 4.87952 5.10194 5.20527 5.37224 5.48362 5.50843 5.57351 5.66339 5.87952 5.96623 6.10178 6.19576 6.22830 6.32889 6.39724 6.42915 6.59339 6.65186 6.74106 7.07755 7.60167 7.77722 8.44366 8.50509 8.72572 9.18004 9.47734 10.63823 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.025250 B = 0.004339 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.632475 B = 6451.521066 C = 7048.388885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.092 4.092 3 C -0.094 4.094 4 C -0.121 4.121 5 C -0.080 4.080 6 C -0.106 4.106 7 C 0.572 3.428 8 O -0.538 6.538 9 N -0.628 5.628 10 C 0.067 3.933 11 C 0.242 3.758 12 O -0.570 6.570 13 C -0.535 4.535 14 H 0.073 0.927 15 C 0.073 3.927 16 N -0.898 5.898 17 Si 0.909 3.091 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.109 3.891 22 C 0.007 3.993 23 Cl -0.039 7.039 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.141 0.859 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.394 0.606 33 H 0.275 0.725 34 H 0.068 0.932 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.911 7.820 -5.830 13.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.093 4.093 3 C -0.112 4.112 4 C -0.139 4.139 5 C -0.098 4.098 6 C -0.110 4.110 7 C 0.361 3.639 8 O -0.417 6.417 9 N -0.361 5.361 10 C -0.056 4.056 11 C 0.200 3.800 12 O -0.383 6.383 13 C -0.573 4.573 14 H 0.091 0.909 15 C -0.130 4.130 16 N -0.538 5.538 17 Si 0.736 3.264 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.013 4.013 22 C -0.021 4.021 23 Cl -0.010 7.010 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.150 0.850 28 H 0.151 0.849 29 H 0.158 0.842 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.250 0.750 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.786 6.849 -6.354 14.270 hybrid contribution 1.257 0.596 0.490 1.475 sum -9.529 7.445 -5.864 13.439 Atomic orbital electron populations 1.20847 0.90075 1.03393 1.02955 1.19709 0.96824 0.91173 1.01567 1.21115 0.94249 0.96962 0.98912 1.21180 0.94131 0.98283 1.00319 1.21583 1.01034 0.90870 0.96360 1.19900 0.92059 0.94772 1.04280 1.17520 0.80460 0.87547 0.78328 1.90776 1.67604 1.35434 1.47886 1.49588 1.11203 1.18830 1.56483 1.24354 0.89399 0.97290 0.94549 1.19559 0.90381 0.87672 0.82412 1.86063 1.67438 1.66792 1.17987 1.21400 0.90365 1.37545 1.08009 0.90921 1.25074 0.99562 0.93468 0.94852 1.69261 1.36105 1.37420 1.11044 0.86368 0.83744 0.78623 0.77677 1.19856 1.20973 1.19793 1.23346 0.85827 0.93853 0.98318 1.20861 0.91145 0.87947 1.02127 1.98383 1.75495 1.30891 1.96220 0.90652 0.91106 0.90790 0.84987 0.84888 0.84160 0.89992 0.91502 0.74980 0.91482 0.91357 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 9.61 36.00 0.35 -0.80 16 2 C -0.09 -1.19 5.88 -104.64 -0.62 -1.81 16 3 C -0.09 -1.05 9.69 -39.50 -0.38 -1.44 16 4 C -0.12 -1.46 10.03 -39.64 -0.40 -1.86 16 5 C -0.08 -1.21 8.85 -39.19 -0.35 -1.56 16 6 C -0.11 -1.92 5.83 -104.94 -0.61 -2.53 16 7 C 0.57 12.24 7.71 -12.36 -0.10 12.14 16 8 O -0.54 -12.66 15.33 5.32 0.08 -12.58 16 9 N -0.63 -13.46 3.64 -186.24 -0.68 -14.14 16 10 C 0.07 1.41 5.56 -8.38 -0.05 1.36 16 11 C 0.24 5.75 1.58 -91.13 -0.14 5.60 16 12 O -0.57 -14.82 13.55 -35.23 -0.48 -15.30 16 13 C -0.54 -13.12 8.70 -34.44 -0.30 -13.42 16 14 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16 15 C 0.07 1.78 5.39 -17.82 -0.10 1.68 16 16 N -0.90 -22.38 11.01 55.43 0.61 -21.77 16 17 Si 0.91 19.00 29.54 -169.99 -5.02 13.98 16 18 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 19 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 C 0.11 2.37 8.02 -8.53 -0.07 2.30 16 22 C 0.01 0.12 6.33 -39.07 -0.25 -0.13 16 23 Cl -0.04 -0.67 24.70 -51.86 -1.28 -1.95 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 26 H 0.07 0.76 6.90 -51.93 -0.36 0.40 16 27 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 29 H 0.14 2.10 5.71 -52.49 -0.30 1.80 16 30 H 0.08 1.58 7.89 -51.93 -0.41 1.17 16 31 H 0.07 1.42 7.76 -51.93 -0.40 1.02 16 32 H 0.39 10.29 6.32 45.56 0.29 10.58 16 33 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 34 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 35 H 0.09 1.70 8.10 -51.93 -0.42 1.28 16 LS Contribution 311.57 15.07 4.70 4.70 Total: -1.00 -28.63 311.57 -8.33 -36.96 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -3.26 Total: 10.55 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -3.01 Total: -0.45 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: -0.07 Total: -35.91 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.40 Total: -27.88 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.98 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.28 Total: -1.95 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.63 -8.33 -36.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189547093.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.883 kcal (2) G-P(sol) polarization free energy of solvation -28.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds