Wall clock time and date at job start Tue Mar 31 2020 07:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38314 * 119.93711 * 2 1 4 4 C 1.38372 * 120.31749 * 179.97438 * 3 2 1 5 5 C 1.37939 * 120.18570 * 359.78949 * 4 3 2 6 6 C 1.39589 * 119.86364 * 0.48542 * 5 4 3 7 7 C 1.47769 * 120.15909 * 179.76673 * 6 5 4 8 8 O 1.21555 * 120.00183 * 204.86400 * 7 6 5 9 9 N 1.34778 * 119.99770 * 24.86717 * 7 6 5 10 10 C 1.47068 * 136.05652 * 4.85691 * 9 7 6 11 11 C 1.53751 * 87.88530 * 152.96775 * 10 9 7 12 12 O 1.42903 * 114.39454 * 272.67712 * 11 10 9 13 13 C 1.50700 * 114.26524 * 139.79677 * 11 10 9 14 14 H 1.08005 * 119.99613 * 266.46861 * 13 11 10 15 15 C 1.37873 * 120.00324 * 86.47574 * 13 11 10 16 16 N 1.31513 * 119.99889 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 120.00029 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47354 * 59.99798 * 17 15 13 19 19 H 1.48500 * 109.47008 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46973 * 299.99437 * 17 15 13 21 21 C 1.47060 * 136.06000 * 185.23587 * 9 7 6 22 22 C 1.38113 * 119.93593 * 180.02562 * 2 1 3 23 23 Cl 1.73604 * 120.09270 * 0.02562 * 22 2 1 24 24 H 1.08999 * 109.47068 * 269.97645 * 1 2 3 25 25 H 1.09000 * 109.47182 * 29.97363 * 1 2 3 26 26 H 1.09001 * 109.47143 * 149.97342 * 1 2 3 27 27 H 1.07995 * 119.83934 * 0.02562 * 3 2 1 28 28 H 1.08007 * 119.90782 * 180.02562 * 4 3 2 29 29 H 1.08000 * 120.07299 * 180.23542 * 5 4 3 30 30 H 1.08996 * 113.47095 * 267.70164 * 10 9 7 31 31 H 1.09004 * 113.46828 * 38.13577 * 10 9 7 32 32 H 0.96705 * 113.99581 * 273.58776 * 12 11 10 33 33 H 0.97008 * 119.99909 * 179.97438 * 16 15 13 34 34 H 1.09002 * 113.46239 * 321.86303 * 21 9 7 35 35 H 1.09006 * 113.47192 * 92.23767 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1986 0.0000 4 6 3.5809 1.2078 0.0005 5 6 4.2824 0.0201 0.0055 6 6 3.5936 -1.1940 -0.0004 7 6 4.3385 -2.4702 -0.0003 8 8 3.8219 -3.4755 -0.4475 9 7 5.5907 -2.5195 0.4956 10 6 6.4964 -1.5841 1.1795 11 6 7.1668 -2.8023 1.8358 12 8 6.5532 -3.2285 3.0540 13 6 8.6682 -2.7092 1.9259 14 1 9.2833 -3.1363 1.1477 15 6 9.2565 -2.0789 3.0018 16 7 8.5074 -1.5585 3.9492 17 14 11.1176 -1.9629 3.1130 18 1 11.6389 -1.2238 1.9353 19 1 11.4953 -1.2427 4.3556 20 1 11.6982 -3.3296 3.1365 21 6 6.6552 -3.5302 0.5851 22 6 2.1962 -1.1969 -0.0005 23 17 1.3289 -2.7008 -0.0019 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5143 27 1 1.6536 2.1317 0.0004 28 1 4.1132 2.1476 0.0009 29 1 5.3623 0.0294 0.0097 30 1 7.1532 -1.0408 0.5002 31 1 5.9899 -0.9304 1.8896 32 1 6.8777 -2.7680 3.8399 33 1 8.9214 -1.1153 4.7064 34 1 6.2840 -4.5346 0.7888 35 1 7.3534 -3.5007 -0.2515 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189547093.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:29 Heat of formation + Delta-G solvation = -40.578987 kcal Electronic energy + Delta-G solvation = -21380.154796 eV Core-core repulsion = 17983.826122 eV Total energy + Delta-G solvation = -3396.328673 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.60891 -40.24578 -38.80895 -37.41676 -35.93918 -34.13945 -34.00665 -32.10101 -30.35055 -28.05870 -27.29090 -26.79905 -24.54503 -22.86727 -21.78825 -20.20251 -19.29522 -18.06313 -17.80726 -17.22252 -17.02374 -16.62730 -16.13647 -15.91734 -15.42919 -15.19438 -14.86519 -14.68295 -14.25020 -14.03017 -13.80957 -13.41519 -13.30506 -13.27987 -12.85870 -12.77728 -12.68205 -12.53633 -12.44027 -12.21240 -12.19122 -11.87070 -11.31922 -10.86381 -10.63764 -10.23834 -10.00530 -9.70024 -9.55802 -8.27149 -6.44892 -0.28545 0.11947 1.12326 1.49679 1.51889 1.59206 1.74428 1.88300 2.41311 2.62876 2.94520 3.33468 3.61611 3.74878 3.90905 4.07184 4.15482 4.23441 4.32209 4.48356 4.55887 4.61357 4.73401 4.75240 4.78917 4.88589 4.93007 5.10536 5.19474 5.22599 5.27540 5.33096 5.72491 5.74804 5.90117 6.61103 6.78947 7.07115 7.29209 7.47758 8.79086 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.025250 B = 0.004339 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.632475 B = 6451.521066 C = 7048.388885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.091 4.091 3 C -0.076 4.076 4 C -0.111 4.111 5 C -0.090 4.090 6 C -0.141 4.141 7 C 0.564 3.436 8 O -0.572 6.572 9 N -0.632 5.632 10 C 0.088 3.912 11 C 0.219 3.781 12 O -0.588 6.588 13 C -0.553 4.553 14 H 0.077 0.923 15 C 0.034 3.966 16 N -0.918 5.918 17 Si 0.971 3.029 18 H -0.264 1.264 19 H -0.283 1.283 20 H -0.276 1.276 21 C 0.108 3.892 22 C -0.016 4.016 23 Cl -0.059 7.059 24 H 0.084 0.916 25 H 0.102 0.898 26 H 0.064 0.936 27 H 0.179 0.821 28 H 0.171 0.829 29 H 0.137 0.863 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.389 0.611 33 H 0.277 0.723 34 H 0.051 0.949 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.083 10.859 -6.340 16.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.092 4.092 3 C -0.094 4.094 4 C -0.129 4.129 5 C -0.109 4.109 6 C -0.145 4.145 7 C 0.356 3.644 8 O -0.453 6.453 9 N -0.365 5.365 10 C -0.035 4.035 11 C 0.178 3.822 12 O -0.401 6.401 13 C -0.591 4.591 14 H 0.095 0.905 15 C -0.166 4.166 16 N -0.559 5.559 17 Si 0.796 3.204 18 H -0.189 1.189 19 H -0.208 1.208 20 H -0.201 1.201 21 C -0.015 4.015 22 C -0.044 4.044 23 Cl -0.030 7.030 24 H 0.103 0.897 25 H 0.121 0.879 26 H 0.083 0.917 27 H 0.197 0.803 28 H 0.188 0.812 29 H 0.155 0.845 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.245 0.755 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.963 9.898 -6.874 16.292 hybrid contribution 1.246 -0.299 0.653 1.438 sum -9.717 9.598 -6.221 15.009 Atomic orbital electron populations 1.20939 0.87830 1.04556 1.03878 1.20168 0.98517 0.90419 1.00062 1.21684 0.94083 0.97920 0.95708 1.21622 0.94790 0.98327 0.98150 1.21674 1.01088 0.91147 0.96980 1.19785 0.92715 0.93918 1.08076 1.18203 0.80158 0.88707 0.77368 1.90734 1.68129 1.37074 1.49364 1.49637 1.11491 1.18582 1.56782 1.24124 0.88958 0.96096 0.94315 1.19872 0.90656 0.89661 0.82010 1.86048 1.67947 1.67357 1.18766 1.21627 0.90800 1.38061 1.08644 0.90518 1.25767 1.03434 0.93004 0.94414 1.69328 1.37540 1.37648 1.11352 0.85398 0.78875 0.78297 0.77819 1.18897 1.20820 1.20112 1.23381 0.86530 0.93121 0.98433 1.21151 0.90785 0.88515 1.03922 1.98365 1.75678 1.32511 1.96441 0.89711 0.87895 0.91732 0.80324 0.81193 0.84536 0.88107 0.92069 0.75486 0.91290 0.93047 0.87344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.93 9.61 71.24 0.68 -1.24 16 2 C -0.09 -2.11 5.88 -19.88 -0.12 -2.23 16 3 C -0.08 -1.35 9.69 22.32 0.22 -1.13 16 4 C -0.11 -2.25 10.03 22.23 0.22 -2.03 16 5 C -0.09 -2.61 8.85 22.53 0.20 -2.41 16 6 C -0.14 -5.11 5.83 -20.07 -0.12 -5.23 16 7 C 0.56 24.89 7.71 86.76 0.67 25.56 16 8 O -0.57 -28.10 15.33 -3.89 -0.06 -28.16 16 9 N -0.63 -27.72 3.64 -861.91 -3.14 -30.86 16 10 C 0.09 3.69 5.56 83.26 0.46 4.16 16 11 C 0.22 10.60 1.58 -11.12 -0.02 10.58 16 12 O -0.59 -31.57 13.55 -148.98 -2.02 -33.59 16 13 C -0.55 -27.13 8.70 25.60 0.22 -26.90 16 14 H 0.08 3.60 7.81 -2.91 -0.02 3.58 16 15 C 0.03 1.65 5.39 84.65 0.46 2.11 16 16 N -0.92 -45.72 11.01 21.45 0.24 -45.49 16 17 Si 0.97 38.33 29.54 68.60 2.03 40.36 16 18 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 19 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16 20 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 21 C 0.11 4.81 8.02 83.17 0.67 5.48 16 22 C -0.02 -0.52 6.33 22.60 0.14 -0.38 16 23 Cl -0.06 -2.06 24.70 -2.72 -0.07 -2.13 16 24 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 25 H 0.10 1.06 8.08 -2.39 -0.02 1.04 16 26 H 0.06 1.22 6.90 -2.39 -0.02 1.20 16 27 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 28 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 29 H 0.14 3.95 5.71 -2.91 -0.02 3.93 16 30 H 0.10 3.82 7.89 -2.39 -0.02 3.80 16 31 H 0.06 2.62 7.76 -2.39 -0.02 2.60 16 32 H 0.39 20.99 6.32 -74.05 -0.47 20.52 16 33 H 0.28 13.07 8.31 -92.70 -0.77 12.30 16 34 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.11 4.29 8.10 -2.38 -0.02 4.27 16 Total: -1.00 -64.07 311.57 1.34 -62.73 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: 0.66 Total: 30.79 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 3.69 Total: 6.34 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -2.90 Total: -76.35 kcal Atomic # 8 Polarization: -59.67 SS G_CDS: -2.08 Total: -61.75 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -0.07 Total: -2.13 kcal Total: -64.07 1.34 -62.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189547093.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.155 kcal (2) G-P(sol) polarization free energy of solvation -64.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds