Wall clock time and date at job start Tue Mar 31 2020 07:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38425 * 119.84144 * 2 1 4 4 C 1.37896 * 120.18512 * 179.76812 * 3 2 1 5 5 C 1.39620 * 119.86093 * 0.53387 * 4 3 2 6 6 C 1.47774 * 120.15355 * 179.74775 * 5 4 3 7 7 O 1.21561 * 119.99820 * 155.04050 * 6 5 4 8 8 N 1.34775 * 119.99831 * 335.03391 * 6 5 4 9 9 C 1.47584 * 134.48924 * 174.78566 * 8 6 5 10 10 C 1.53946 * 86.11153 * 155.36520 * 9 8 6 11 11 O 1.42900 * 113.74199 * 269.15206 * 10 9 8 12 12 C 1.50709 * 113.74062 * 137.95663 * 10 9 8 13 13 H 1.07999 * 119.99905 * 1.91935 * 12 10 9 14 14 C 1.37873 * 120.00070 * 181.92350 * 12 10 9 15 15 N 1.31515 * 119.99858 * 359.97438 * 14 12 10 16 16 Si 1.86792 * 120.00029 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47326 * 180.02562 * 16 14 12 18 18 H 1.48500 * 109.47439 * 299.99994 * 16 14 12 19 19 H 1.48505 * 109.47170 * 59.99858 * 16 14 12 20 20 C 1.47812 * 134.45798 * 354.66792 * 8 6 5 21 21 C 1.39698 * 119.69376 * 359.46754 * 5 4 3 22 22 Cl 1.73599 * 120.09682 * 180.23191 * 21 5 4 23 23 C 1.38157 * 119.81102 * 0.25588 * 21 5 4 24 24 H 1.09008 * 109.46626 * 269.97559 * 1 2 3 25 25 H 1.08996 * 109.47164 * 29.97089 * 1 2 3 26 26 H 1.08998 * 109.46972 * 149.97924 * 1 2 3 27 27 H 1.08007 * 119.90557 * 0.04889 * 3 2 1 28 28 H 1.07995 * 120.06546 * 180.27645 * 4 3 2 29 29 H 1.08994 * 113.76978 * 41.06583 * 9 8 6 30 30 H 1.08997 * 113.87307 * 269.67602 * 9 8 6 31 31 H 0.96699 * 114.00319 * 178.07709 * 11 10 9 32 32 H 0.96999 * 120.00235 * 180.02562 * 15 14 12 33 33 H 1.08997 * 113.77379 * 90.37203 * 20 8 6 34 34 H 1.09009 * 113.83254 * 318.90622 * 20 8 6 35 35 H 1.08000 * 119.93144 * 179.97438 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2007 0.0000 4 6 3.5748 1.2090 0.0048 5 6 4.2772 0.0024 -0.0016 6 6 5.7550 0.0037 -0.0021 7 8 6.3638 -0.9524 0.4371 8 7 6.4277 1.0650 -0.4896 9 6 7.8524 1.4438 -0.5582 10 6 7.4549 2.3135 -1.7647 11 8 7.5540 1.6366 -3.0193 12 6 8.1097 3.6708 -1.7762 13 1 8.8105 3.9389 -0.9994 14 6 7.8138 4.5705 -2.7782 15 7 6.9607 4.2439 -3.7242 16 14 8.6248 6.2531 -2.7920 17 1 8.1414 7.0260 -3.9642 18 1 8.2788 6.9797 -1.5439 19 1 10.0985 6.0917 -2.8783 20 6 6.0341 2.3156 -1.1721 21 6 3.5766 -1.2062 -0.0015 22 17 4.4395 -2.7126 -0.0034 23 6 2.1951 -1.1993 -0.0005 24 1 -0.3633 -0.0004 1.0278 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6517 2.1337 0.0008 28 1 4.1102 2.1469 0.0093 29 1 8.5152 0.6166 -0.8122 30 1 8.1983 2.0173 0.3018 31 1 7.2773 2.1700 -3.7769 32 1 6.7528 4.8767 -4.4294 33 1 5.8430 3.1458 -0.4922 34 1 5.2479 2.1832 -1.9154 35 1 1.6515 -2.1325 -0.0009 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193981621.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:37 Heat of formation + Delta-G solvation = -45.731826 kcal Electronic energy + Delta-G solvation = -21313.803249 eV Core-core repulsion = 17917.251132 eV Total energy + Delta-G solvation = -3396.552117 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.53351 -40.16911 -38.78342 -37.46697 -35.84220 -34.15353 -33.91305 -31.90688 -30.51296 -28.42675 -27.10492 -26.84414 -23.77786 -23.34863 -21.71168 -20.39563 -19.33086 -18.28384 -17.64104 -17.01954 -16.87318 -16.57055 -16.07456 -15.87834 -15.46403 -15.08876 -14.90476 -14.69738 -14.28946 -14.03493 -13.81808 -13.54623 -13.41181 -13.14276 -12.92717 -12.79693 -12.73759 -12.32936 -12.28109 -12.20118 -12.19998 -12.07322 -11.31597 -10.86594 -10.62697 -10.25325 -9.98472 -9.77726 -9.50722 -8.25404 -6.42935 -0.30955 0.12672 1.09276 1.49244 1.51720 1.58604 1.74641 1.88237 2.41820 2.61471 2.97004 3.32835 3.62505 3.79094 3.84908 4.10162 4.17678 4.20329 4.31676 4.46561 4.58580 4.61072 4.73705 4.83954 4.86200 4.88406 4.90209 5.11426 5.14801 5.22101 5.24553 5.42006 5.72991 5.73676 5.93112 6.62698 6.77255 7.09097 7.30651 7.43948 8.80598 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.020362 B = 0.004559 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.768133 B = 6139.834617 C = 7061.771578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.044 4.044 3 C -0.120 4.120 4 C -0.076 4.076 5 C -0.153 4.153 6 C 0.558 3.442 7 O -0.572 6.572 8 N -0.630 5.630 9 C 0.113 3.887 10 C 0.219 3.781 11 O -0.588 6.588 12 C -0.557 4.557 13 H 0.073 0.927 14 C 0.036 3.964 15 N -0.916 5.916 16 Si 0.967 3.033 17 H -0.283 1.283 18 H -0.266 1.266 19 H -0.277 1.277 20 C 0.095 3.905 21 C -0.003 4.003 22 Cl -0.061 7.061 23 C -0.124 4.124 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.167 0.833 28 H 0.139 0.861 29 H 0.057 0.943 30 H 0.107 0.893 31 H 0.387 0.613 32 H 0.276 0.724 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.865 -2.797 6.040 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.045 4.045 3 C -0.138 4.138 4 C -0.095 4.095 5 C -0.157 4.157 6 C 0.350 3.650 7 O -0.454 6.454 8 N -0.363 5.363 9 C -0.009 4.009 10 C 0.178 3.822 11 O -0.399 6.399 12 C -0.595 4.595 13 H 0.091 0.909 14 C -0.165 4.165 15 N -0.556 5.556 16 Si 0.793 3.207 17 H -0.208 1.208 18 H -0.190 1.190 19 H -0.202 1.202 20 C -0.027 4.027 21 C -0.031 4.031 22 Cl -0.031 7.031 23 C -0.142 4.142 24 H 0.111 0.889 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.184 0.816 28 H 0.157 0.843 29 H 0.076 0.924 30 H 0.125 0.875 31 H 0.241 0.759 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -14.440 -4.015 6.543 16.354 hybrid contribution 0.831 0.903 -0.577 1.356 sum -13.610 -3.112 5.966 15.182 Atomic orbital electron populations 1.20960 0.87023 1.04780 1.04212 1.20516 0.98611 0.91319 0.94031 1.21486 0.92617 0.99882 0.99833 1.21663 0.95768 0.96304 0.95762 1.19786 0.92284 0.94470 1.09125 1.18331 0.87678 0.81666 0.77364 1.90734 1.70576 1.34604 1.49469 1.50131 1.10075 1.19071 1.57038 1.23483 0.82390 0.96728 0.98319 1.20136 0.90938 0.89509 0.81598 1.86064 1.89818 1.45796 1.18268 1.21682 1.27560 0.98236 1.12058 0.90878 1.25717 0.94321 1.02218 0.94225 1.69464 1.34149 1.38042 1.13914 0.85459 0.78586 0.78754 0.77942 1.20802 1.19044 1.20231 1.24196 1.01296 0.83012 0.94170 1.21222 0.93374 0.86324 1.02157 1.98382 1.77742 1.30554 1.96458 1.21208 0.89981 1.00762 1.02266 0.88906 0.89398 0.89866 0.81572 0.84340 0.92449 0.87498 0.75870 0.91428 0.88322 0.91616 0.82135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.00 71.24 0.71 -0.46 16 2 C -0.04 -0.84 5.88 -19.81 -0.12 -0.96 16 3 C -0.12 -2.56 9.68 22.23 0.22 -2.34 16 4 C -0.08 -2.23 8.83 22.52 0.20 -2.03 16 5 C -0.15 -5.50 5.82 -20.07 -0.12 -5.61 16 6 C 0.56 24.41 7.70 86.77 0.67 25.08 16 7 O -0.57 -27.87 15.27 -3.91 -0.06 -27.93 16 8 N -0.63 -27.43 3.58 -843.23 -3.02 -30.44 16 9 C 0.11 5.02 8.23 86.49 0.71 5.73 16 10 C 0.22 10.51 1.40 -10.88 -0.02 10.50 16 11 O -0.59 -31.05 13.48 -148.98 -2.01 -33.06 16 12 C -0.56 -27.33 8.61 25.60 0.22 -27.10 16 13 H 0.07 3.46 7.81 -2.91 -0.02 3.44 16 14 C 0.04 1.74 5.39 84.65 0.46 2.20 16 15 N -0.92 -45.24 11.20 21.45 0.24 -45.00 16 16 Si 0.97 38.44 29.54 68.60 2.03 40.46 16 17 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 18 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 19 H -0.28 -11.10 7.11 99.48 0.71 -10.40 16 20 C 0.10 4.01 5.69 86.44 0.49 4.50 16 21 C 0.00 -0.10 6.34 22.60 0.14 0.05 16 22 Cl -0.06 -2.10 26.35 -2.72 -0.07 -2.17 16 23 C -0.12 -2.88 9.47 22.26 0.21 -2.67 16 24 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 25 H 0.09 0.70 8.08 -2.39 -0.02 0.68 16 26 H 0.08 0.70 8.08 -2.39 -0.02 0.68 16 27 H 0.17 2.39 8.06 -2.91 -0.02 2.36 16 28 H 0.14 4.03 5.56 -2.91 -0.02 4.01 16 29 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.11 4.24 8.09 -2.39 -0.02 4.22 16 31 H 0.39 20.51 6.60 -74.06 -0.49 20.02 16 32 H 0.28 12.95 8.31 -92.71 -0.77 12.17 16 33 H 0.10 3.78 7.71 -2.39 -0.02 3.76 16 34 H 0.07 2.80 7.86 -2.38 -0.02 2.79 16 35 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -62.65 314.30 1.53 -61.12 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: 0.64 Total: 30.13 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 3.78 Total: 6.88 kcal Atomic # 7 Polarization: -72.66 SS G_CDS: -2.78 Total: -75.44 kcal Atomic # 8 Polarization: -58.91 SS G_CDS: -2.07 Total: -60.98 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.46 kcal Atomic # 17 Polarization: -2.10 SS G_CDS: -0.07 Total: -2.17 kcal Total: -62.65 1.53 -61.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193981621.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.389 kcal (2) G-P(sol) polarization free energy of solvation -62.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds