Wall clock time and date at job start Tue Mar 31 2020 07:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37917 * 120.06855 * 2 1 4 4 C 1.38485 * 120.13352 * 180.29606 * 3 2 1 5 5 Cl 1.73603 * 119.87105 * 179.69958 * 4 3 2 6 6 C 1.38536 * 120.26623 * 359.68438 * 4 3 2 7 7 C 1.37876 * 120.13065 * 359.97438 * 6 4 3 8 8 C 1.39593 * 120.06975 * 179.68082 * 2 1 3 9 9 C 1.47787 * 120.12807 * 359.97438 * 8 2 1 10 10 O 1.21565 * 119.99770 * 327.10459 * 9 8 2 11 11 N 1.34777 * 120.00089 * 147.11643 * 9 8 2 12 12 C 1.47575 * 134.49489 * 175.08199 * 11 9 8 13 13 C 1.53936 * 86.12200 * 155.34808 * 12 11 9 14 14 O 1.42897 * 113.74720 * 269.15833 * 13 12 11 15 15 C 1.50700 * 113.74251 * 137.94769 * 13 12 11 16 16 H 1.07999 * 119.99951 * 1.93407 * 15 13 12 17 17 C 1.37886 * 120.00059 * 182.20207 * 15 13 12 18 18 N 1.31508 * 119.99610 * 359.73208 * 17 15 13 19 19 Si 1.86795 * 119.99730 * 179.72533 * 17 15 13 20 20 H 1.48494 * 109.47645 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46639 * 120.00523 * 19 17 15 22 22 H 1.48502 * 109.47429 * 240.00020 * 19 17 15 23 23 C 1.47817 * 134.45567 * 354.93768 * 11 9 8 24 24 H 1.09000 * 109.46670 * 264.59452 * 1 2 3 25 25 H 1.08996 * 109.47030 * 24.59349 * 1 2 3 26 26 H 1.08993 * 109.46914 * 144.59836 * 1 2 3 27 27 H 1.08003 * 119.93584 * 0.02562 * 3 2 1 28 28 H 1.07997 * 119.93475 * 180.02562 * 6 4 3 29 29 H 1.07997 * 120.06720 * 180.02562 * 7 6 4 30 30 H 1.09010 * 113.76925 * 41.04694 * 12 11 9 31 31 H 1.08998 * 113.76786 * 269.65807 * 12 11 9 32 32 H 0.96704 * 114.00546 * 178.07285 * 14 13 12 33 33 H 0.97006 * 119.99649 * 179.97438 * 18 17 15 34 34 H 1.08994 * 113.76548 * 90.38327 * 23 11 9 35 35 H 1.08996 * 113.83234 * 318.92258 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1936 0.0000 4 6 3.5829 1.1952 -0.0062 5 17 4.4457 2.7015 -0.0140 6 6 4.2825 -0.0006 -0.0058 7 6 3.6028 -1.2001 0.0012 8 6 2.2064 -1.2080 0.0067 9 6 1.4719 -2.4904 0.0144 10 8 0.4030 -2.5752 0.5871 11 7 1.9873 -3.5660 -0.6132 12 6 1.5919 -4.9830 -0.7307 13 6 2.3910 -4.9885 -2.0464 14 8 1.6099 -4.6547 -3.1955 15 6 3.2266 -6.2270 -2.2435 16 1 3.1997 -7.0190 -1.5098 17 6 4.0298 -6.3466 -3.3579 18 7 4.0625 -5.3821 -4.2513 19 14 5.0714 -7.8784 -3.5984 20 1 4.8561 -8.8072 -2.4600 21 1 4.6806 -8.5489 -4.8645 22 1 6.5052 -7.4971 -3.6623 23 6 3.1745 -3.7987 -1.4626 24 1 -0.3633 -0.0968 1.0231 25 1 -0.3633 0.9344 -0.4277 26 1 -0.3633 -0.8376 -0.5953 27 1 1.6581 2.1289 0.0004 28 1 5.3624 0.0069 -0.0102 29 1 4.1492 -2.1317 0.0019 30 1 0.5204 -5.1303 -0.8668 31 1 2.0154 -5.6229 0.0434 32 1 2.1144 -4.6283 -4.0200 33 1 4.6278 -5.4661 -5.0352 34 1 4.0639 -4.0900 -0.9041 35 1 3.3642 -3.0022 -2.1821 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193986589.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:50 Heat of formation + Delta-G solvation = -34.693008 kcal Electronic energy + Delta-G solvation = -21308.353525 eV Core-core repulsion = 17912.280087 eV Total energy + Delta-G solvation = -3396.073438 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.21597 -38.80968 -37.28867 -36.46116 -34.06591 -32.67546 -32.26865 -31.22200 -28.59907 -27.01369 -25.41337 -25.36500 -23.31747 -21.66055 -20.16023 -18.68309 -17.54777 -16.78072 -16.40271 -15.91945 -15.51627 -15.13149 -14.59867 -14.28831 -14.15291 -13.80903 -13.32837 -13.17251 -12.86721 -12.71205 -12.62770 -12.15368 -12.03453 -11.80690 -11.62852 -11.49053 -11.27685 -11.13417 -11.08517 -10.90101 -10.54510 -10.33918 -9.69841 -9.28051 -8.96273 -8.81950 -8.69098 -8.46627 -7.89808 -6.43675 -4.54273 0.79586 1.22242 1.96952 3.02902 3.10716 3.20724 3.23990 3.42162 3.79643 4.15169 4.67766 4.72151 4.75938 4.84563 5.09074 5.24929 5.41486 5.51870 5.66662 5.79077 5.83162 5.89368 6.03191 6.08616 6.14162 6.23970 6.31958 6.38798 6.47739 6.58392 6.61272 6.71402 7.03708 7.58639 7.76970 8.35587 8.49619 8.63700 9.17262 9.37709 10.63109 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.019165 B = 0.004266 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.673777 B = 6562.146162 C = 7540.290331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.021 4.021 3 C -0.123 4.123 4 C -0.015 4.015 5 Cl -0.073 7.073 6 C -0.125 4.125 7 C -0.067 4.067 8 C -0.115 4.115 9 C 0.569 3.431 10 O -0.553 6.553 11 N -0.625 5.625 12 C 0.113 3.887 13 C 0.239 3.761 14 O -0.572 6.572 15 C -0.538 4.538 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.897 5.897 19 Si 0.906 3.094 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.281 1.281 23 C 0.076 3.924 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.137 0.863 28 H 0.137 0.863 29 H 0.141 0.859 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.392 0.608 33 H 0.273 0.727 34 H 0.083 0.917 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.396 10.973 5.959 12.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.022 4.022 3 C -0.142 4.142 4 C -0.041 4.041 5 Cl -0.045 7.045 6 C -0.143 4.143 7 C -0.086 4.086 8 C -0.118 4.118 9 C 0.359 3.641 10 O -0.434 6.434 11 N -0.358 5.358 12 C -0.009 4.009 13 C 0.197 3.803 14 O -0.383 6.383 15 C -0.577 4.577 16 H 0.090 0.910 17 C -0.130 4.130 18 N -0.537 5.537 19 Si 0.733 3.267 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.207 1.207 23 C -0.046 4.046 24 H 0.100 0.900 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.155 0.845 28 H 0.155 0.845 29 H 0.158 0.842 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.247 0.753 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.441 11.292 6.600 13.087 hybrid contribution 1.418 -0.518 -0.617 1.631 sum 1.859 10.774 5.983 12.463 Atomic orbital electron populations 1.20858 0.89542 1.02657 1.03673 1.19923 0.96978 0.90763 0.94540 1.20840 0.91796 0.98439 1.03132 1.21068 0.92439 0.87002 1.03623 1.98364 1.77042 1.32211 1.96840 1.20961 1.00626 0.90359 1.02379 1.21438 0.93054 0.98407 0.95659 1.20043 0.93805 0.93691 1.04223 1.17779 0.84999 0.82865 0.78463 1.90718 1.21943 1.84724 1.45997 1.50180 1.28256 1.08760 1.48586 1.23489 1.00961 0.78894 0.97536 1.19840 0.86627 0.90609 0.83175 1.86064 1.40315 1.92516 1.19448 1.21535 1.24665 1.03612 1.07840 0.90951 1.25066 0.96014 0.96763 0.95129 1.69414 1.40165 1.32466 1.11630 0.86298 0.79580 0.82286 0.78487 1.19420 1.20617 1.20671 1.24433 0.88889 1.00164 0.91144 0.90045 0.91944 0.90139 0.84543 0.84476 0.84178 0.90919 0.89392 0.75337 0.91697 0.89918 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 8.63 36.01 0.31 -1.24 16 2 C -0.02 -0.31 5.91 -104.23 -0.62 -0.93 16 3 C -0.12 -1.58 9.44 -39.61 -0.37 -1.95 16 4 C -0.01 -0.18 6.33 -39.38 -0.25 -0.43 16 5 Cl -0.07 -0.81 28.95 -51.86 -1.50 -2.31 16 6 C -0.12 -1.61 9.81 -39.60 -0.39 -2.00 16 7 C -0.07 -0.99 8.89 -39.19 -0.35 -1.34 16 8 C -0.11 -1.94 5.75 -104.97 -0.60 -2.54 16 9 C 0.57 11.40 7.25 -12.36 -0.09 11.31 16 10 O -0.55 -12.14 15.38 5.31 0.08 -12.06 16 11 N -0.63 -12.79 3.57 -179.25 -0.64 -13.43 16 12 C 0.11 2.37 8.23 -2.98 -0.02 2.35 16 13 C 0.24 5.53 1.40 -90.85 -0.13 5.40 16 14 O -0.57 -14.34 13.49 -35.23 -0.48 -14.82 16 15 C -0.54 -13.04 8.61 -34.44 -0.30 -13.33 16 16 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 17 C 0.07 1.76 5.40 -17.82 -0.10 1.67 16 18 N -0.90 -22.08 11.21 55.43 0.62 -21.46 16 19 Si 0.91 18.93 29.54 -169.99 -5.02 13.91 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 23 C 0.08 1.56 5.99 -2.83 -0.02 1.54 16 24 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.06 0.69 8.05 -51.93 -0.42 0.27 16 26 H 0.08 1.32 6.66 -51.93 -0.35 0.98 16 27 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 28 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.14 2.02 6.24 -52.49 -0.33 1.69 16 30 H 0.07 1.56 8.14 -51.92 -0.42 1.13 16 31 H 0.09 1.68 8.09 -51.93 -0.42 1.26 16 32 H 0.39 9.93 6.61 45.56 0.30 10.23 16 33 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 34 H 0.08 1.58 7.76 -51.93 -0.40 1.18 16 35 H 0.07 1.49 8.10 -51.93 -0.42 1.07 16 LS Contribution 315.10 15.07 4.75 4.75 Total: -1.00 -26.80 315.10 -8.38 -35.17 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -3.27 Total: 11.75 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -2.92 Total: -1.49 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: -0.02 Total: -34.90 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.39 Total: -26.88 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.91 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.80 -8.38 -35.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193986589.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.479 kcal (2) G-P(sol) polarization free energy of solvation -26.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds