Wall clock time and date at job start Tue Mar 31 2020 07:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38105 * 120.07608 * 2 1 4 4 Cl 1.73595 * 119.94070 * 359.97438 * 3 2 1 5 5 C 1.38452 * 120.11396 * 179.97438 * 3 2 1 6 6 C 1.38355 * 120.28020 * 0.02579 * 5 3 2 7 7 C 1.37942 * 120.16121 * 359.73972 * 6 5 3 8 8 C 1.39531 * 120.07995 * 179.97438 * 2 1 3 9 9 C 1.47851 * 120.14222 * 359.97438 * 8 2 1 10 10 O 1.21543 * 119.99643 * 327.56553 * 9 8 2 11 11 N 1.34773 * 119.99915 * 147.56360 * 9 8 2 12 12 C 1.47577 * 134.49269 * 175.15308 * 11 9 8 13 13 C 1.53948 * 86.11987 * 155.36001 * 12 11 9 14 14 O 1.42906 * 113.73749 * 269.15560 * 13 12 11 15 15 C 1.50693 * 113.74440 * 137.95454 * 13 12 11 16 16 H 1.08006 * 119.99891 * 1.92967 * 15 13 12 17 17 C 1.37873 * 120.00065 * 181.92281 * 15 13 12 18 18 N 1.31514 * 120.00024 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 120.00137 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47463 * 180.02562 * 19 17 15 21 21 H 1.48498 * 109.47233 * 300.00389 * 19 17 15 22 22 H 1.48503 * 109.46904 * 60.00359 * 19 17 15 23 23 C 1.47815 * 134.46113 * 355.02109 * 11 9 8 24 24 H 1.08999 * 109.47005 * 264.43971 * 1 2 3 25 25 H 1.09000 * 109.47296 * 24.44022 * 1 2 3 26 26 H 1.09002 * 109.46842 * 144.44195 * 1 2 3 27 27 H 1.07996 * 119.85448 * 180.02562 * 5 3 2 28 28 H 1.08001 * 119.92088 * 179.97438 * 6 5 3 29 29 H 1.08001 * 120.06089 * 180.25563 * 7 6 5 30 30 H 1.09000 * 113.77107 * 41.05400 * 12 11 9 31 31 H 1.09001 * 113.87595 * 269.67144 * 12 11 9 32 32 H 0.96702 * 113.99375 * 178.06857 * 14 13 12 33 33 H 0.97001 * 119.99695 * 180.02562 * 18 17 15 34 34 H 1.08999 * 113.76755 * 90.37327 * 23 11 9 35 35 H 1.09004 * 113.83219 * 318.92262 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1992 1.1951 0.0000 4 17 1.3317 2.6987 -0.0007 5 6 3.5837 1.1960 0.0005 6 6 4.2821 0.0017 0.0005 7 6 3.6025 -1.1986 0.0054 8 6 2.2064 -1.2074 0.0005 9 6 1.4721 -2.4907 0.0017 10 8 0.3995 -2.5765 0.5667 11 7 1.9923 -3.5652 -0.6238 12 6 1.5976 -4.9819 -0.7468 13 6 2.4072 -4.9853 -2.0561 14 8 1.6351 -4.6495 -3.2108 15 6 3.2441 -6.2236 -2.2488 16 1 3.2112 -7.0169 -1.5167 17 6 4.0516 -6.3439 -3.3599 18 7 4.0919 -5.3777 -4.2512 19 14 5.0896 -7.8785 -3.5984 20 1 5.8629 -7.7619 -4.8608 21 1 6.0270 -8.0246 -2.4560 22 1 4.2044 -9.0689 -3.6677 23 6 3.1860 -3.7967 -1.4642 24 1 -0.3633 -0.0996 1.0228 25 1 -0.3634 0.9356 -0.4252 26 1 -0.3633 -0.8361 -0.5976 27 1 4.1207 2.1330 0.0010 28 1 5.3621 0.0092 0.0005 29 1 4.1493 -2.1300 0.0096 30 1 0.5273 -5.1288 -0.8916 31 1 2.0139 -5.6248 0.0288 32 1 2.1462 -4.6217 -4.0312 33 1 4.6598 -5.4625 -5.0330 34 1 4.0711 -4.0891 -0.8991 35 1 3.3817 -2.9990 -2.1807 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193990414.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:42 Heat of formation + Delta-G solvation = -32.563171 kcal Electronic energy + Delta-G solvation = -21397.481035 eV Core-core repulsion = 18001.499953 eV Total energy + Delta-G solvation = -3395.981082 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.21270 -38.81151 -37.23430 -36.43079 -34.05195 -32.67074 -32.26578 -31.23360 -28.58009 -26.94551 -25.42584 -25.36696 -23.35708 -21.57661 -20.17994 -18.70503 -17.56798 -16.82791 -16.21289 -15.79225 -15.47574 -15.19235 -14.69994 -14.47680 -14.19450 -13.89405 -13.42955 -13.13841 -12.74242 -12.57581 -12.34468 -12.12106 -12.07535 -11.65436 -11.62367 -11.50592 -11.42285 -11.13890 -11.06772 -10.77696 -10.57989 -10.34020 -9.69604 -9.27351 -8.90477 -8.80681 -8.69534 -8.46122 -7.89832 -6.43247 -4.54137 0.88113 1.15410 2.03299 3.05974 3.13368 3.19815 3.21671 3.43727 3.80472 4.15153 4.64131 4.72058 4.81363 4.92519 5.01195 5.24755 5.44031 5.58727 5.65402 5.69458 5.87340 5.91055 6.08797 6.11041 6.24120 6.28538 6.32752 6.38758 6.46123 6.55865 6.61261 6.73052 7.03899 7.58607 7.77147 8.35859 8.49090 8.64186 9.17333 9.38214 10.63447 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.026072 B = 0.004022 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.670940 B = 6959.904946 C = 7431.891241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.023 4.023 3 C -0.049 4.049 4 Cl -0.069 7.069 5 C -0.091 4.091 6 C -0.122 4.122 7 C -0.075 4.075 8 C -0.108 4.108 9 C 0.570 3.430 10 O -0.552 6.552 11 N -0.625 5.625 12 C 0.113 3.887 13 C 0.240 3.760 14 O -0.572 6.572 15 C -0.540 4.540 16 H 0.071 0.929 17 C 0.074 3.926 18 N -0.897 5.897 19 Si 0.907 3.093 20 H -0.285 1.285 21 H -0.274 1.274 22 H -0.273 1.273 23 C 0.077 3.923 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.134 0.866 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.392 0.608 33 H 0.274 0.726 34 H 0.083 0.917 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.690 10.999 5.974 12.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.025 4.025 3 C -0.075 4.075 4 Cl -0.040 7.040 5 C -0.110 4.110 6 C -0.140 4.140 7 C -0.093 4.093 8 C -0.111 4.111 9 C 0.360 3.640 10 O -0.432 6.432 11 N -0.358 5.358 12 C -0.009 4.009 13 C 0.198 3.802 14 O -0.383 6.383 15 C -0.578 4.578 16 H 0.089 0.911 17 C -0.129 4.129 18 N -0.537 5.537 19 Si 0.734 3.266 20 H -0.210 1.210 21 H -0.199 1.199 22 H -0.198 1.198 23 C -0.046 4.046 24 H 0.101 0.899 25 H 0.085 0.915 26 H 0.099 0.901 27 H 0.152 0.848 28 H 0.154 0.846 29 H 0.155 0.845 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.247 0.753 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.572 11.321 6.602 13.118 hybrid contribution 1.240 -0.538 -0.586 1.473 sum 1.812 10.783 6.016 12.480 Atomic orbital electron populations 1.20929 0.89395 1.03077 1.03820 1.19795 0.97334 0.89985 0.95369 1.20636 0.92330 0.86491 1.08087 1.98342 1.77059 1.31594 1.97051 1.21149 0.91749 0.99312 0.98754 1.21033 1.00372 0.91306 1.01320 1.21594 0.93034 0.99242 0.95460 1.19855 0.93758 0.93044 1.04457 1.17733 0.85015 0.82811 0.78451 1.90717 1.21672 1.84660 1.46184 1.50159 1.27869 1.08774 1.48954 1.23488 1.00984 0.78886 0.97515 1.19827 0.86679 0.90587 0.83109 1.86070 1.40359 1.92470 1.19447 1.21458 1.24602 1.03570 1.08147 0.91054 1.25059 0.95992 0.96771 0.95091 1.69394 1.40052 1.32436 1.11822 0.86400 0.79935 0.82570 0.77690 1.20994 1.19889 1.19828 1.24429 0.88702 1.00151 0.91299 0.89933 0.91472 0.90055 0.84774 0.84555 0.84504 0.90923 0.89387 0.75338 0.91584 0.89918 0.91071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 8.33 36.01 0.30 -1.48 16 2 C -0.02 -0.37 5.91 -104.18 -0.62 -0.98 16 3 C -0.05 -0.66 6.31 -39.55 -0.25 -0.91 16 4 Cl -0.07 -0.83 27.19 -51.86 -1.41 -2.24 16 5 C -0.09 -1.07 9.82 -39.46 -0.39 -1.46 16 6 C -0.12 -1.46 10.03 -39.65 -0.40 -1.86 16 7 C -0.07 -1.09 8.89 -39.18 -0.35 -1.44 16 8 C -0.11 -1.86 5.75 -104.97 -0.60 -2.46 16 9 C 0.57 11.58 7.26 -12.33 -0.09 11.49 16 10 O -0.55 -12.31 15.35 5.33 0.08 -12.22 16 11 N -0.63 -12.87 3.57 -179.21 -0.64 -13.52 16 12 C 0.11 2.38 8.23 -2.97 -0.02 2.36 16 13 C 0.24 5.55 1.40 -90.85 -0.13 5.43 16 14 O -0.57 -14.40 13.49 -35.23 -0.48 -14.88 16 15 C -0.54 -13.07 8.61 -34.45 -0.30 -13.37 16 16 H 0.07 1.68 7.81 -52.48 -0.41 1.27 16 17 C 0.07 1.78 5.39 -17.82 -0.10 1.68 16 18 N -0.90 -22.07 11.20 55.43 0.62 -21.45 16 19 Si 0.91 18.89 29.54 -169.99 -5.02 13.87 16 20 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 C 0.08 1.57 5.99 -2.84 -0.02 1.56 16 24 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.07 0.89 6.67 -51.93 -0.35 0.55 16 26 H 0.08 1.42 6.64 -51.93 -0.34 1.07 16 27 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 29 H 0.14 1.95 6.25 -52.49 -0.33 1.62 16 30 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 31 H 0.09 1.68 8.09 -51.93 -0.42 1.26 16 32 H 0.39 9.95 6.60 45.56 0.30 10.25 16 33 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 34 H 0.08 1.58 7.77 -51.93 -0.40 1.18 16 35 H 0.07 1.49 8.10 -51.93 -0.42 1.07 16 LS Contribution 312.20 15.07 4.70 4.70 Total: -1.00 -27.03 312.20 -8.29 -35.32 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -3.20 Total: 11.86 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.95 Total: -1.45 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: -0.02 Total: -34.96 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.39 Total: -27.10 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.41 Total: -2.24 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.03 -8.29 -35.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193990414.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.754 kcal (2) G-P(sol) polarization free energy of solvation -27.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds