Wall clock time and date at job start Tue Mar 31 2020 07:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38105 * 120.07608 * 2 1 4 4 Cl 1.73595 * 119.94070 * 359.97438 * 3 2 1 5 5 C 1.38452 * 120.11396 * 179.97438 * 3 2 1 6 6 C 1.38355 * 120.28020 * 0.02579 * 5 3 2 7 7 C 1.37942 * 120.16121 * 359.73972 * 6 5 3 8 8 C 1.39531 * 120.07995 * 179.97438 * 2 1 3 9 9 C 1.47851 * 120.14222 * 359.97438 * 8 2 1 10 10 O 1.21543 * 119.99643 * 327.56553 * 9 8 2 11 11 N 1.34773 * 119.99915 * 147.56360 * 9 8 2 12 12 C 1.47577 * 134.49269 * 175.15308 * 11 9 8 13 13 C 1.53948 * 86.11987 * 155.36001 * 12 11 9 14 14 O 1.42906 * 113.73749 * 269.15560 * 13 12 11 15 15 C 1.50693 * 113.74440 * 137.95454 * 13 12 11 16 16 H 1.08006 * 119.99891 * 1.92967 * 15 13 12 17 17 C 1.37873 * 120.00065 * 181.92281 * 15 13 12 18 18 N 1.31514 * 120.00024 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 120.00137 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47463 * 180.02562 * 19 17 15 21 21 H 1.48498 * 109.47233 * 300.00389 * 19 17 15 22 22 H 1.48503 * 109.46904 * 60.00359 * 19 17 15 23 23 C 1.47815 * 134.46113 * 355.02109 * 11 9 8 24 24 H 1.08999 * 109.47005 * 264.43971 * 1 2 3 25 25 H 1.09000 * 109.47296 * 24.44022 * 1 2 3 26 26 H 1.09002 * 109.46842 * 144.44195 * 1 2 3 27 27 H 1.07996 * 119.85448 * 180.02562 * 5 3 2 28 28 H 1.08001 * 119.92088 * 179.97438 * 6 5 3 29 29 H 1.08001 * 120.06089 * 180.25563 * 7 6 5 30 30 H 1.09000 * 113.77107 * 41.05400 * 12 11 9 31 31 H 1.09001 * 113.87595 * 269.67144 * 12 11 9 32 32 H 0.96702 * 113.99375 * 178.06857 * 14 13 12 33 33 H 0.97001 * 119.99695 * 180.02562 * 18 17 15 34 34 H 1.08999 * 113.76755 * 90.37327 * 23 11 9 35 35 H 1.09004 * 113.83219 * 318.92262 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1992 1.1951 0.0000 4 17 1.3317 2.6987 -0.0007 5 6 3.5837 1.1960 0.0005 6 6 4.2821 0.0017 0.0005 7 6 3.6025 -1.1986 0.0054 8 6 2.2064 -1.2074 0.0005 9 6 1.4721 -2.4907 0.0017 10 8 0.3995 -2.5765 0.5667 11 7 1.9923 -3.5652 -0.6238 12 6 1.5976 -4.9819 -0.7468 13 6 2.4072 -4.9853 -2.0561 14 8 1.6351 -4.6495 -3.2108 15 6 3.2441 -6.2236 -2.2488 16 1 3.2112 -7.0169 -1.5167 17 6 4.0516 -6.3439 -3.3599 18 7 4.0919 -5.3777 -4.2512 19 14 5.0896 -7.8785 -3.5984 20 1 5.8629 -7.7619 -4.8608 21 1 6.0270 -8.0246 -2.4560 22 1 4.2044 -9.0689 -3.6677 23 6 3.1860 -3.7967 -1.4642 24 1 -0.3633 -0.0996 1.0228 25 1 -0.3634 0.9356 -0.4252 26 1 -0.3633 -0.8361 -0.5976 27 1 4.1207 2.1330 0.0010 28 1 5.3621 0.0092 0.0005 29 1 4.1493 -2.1300 0.0096 30 1 0.5273 -5.1288 -0.8916 31 1 2.0139 -5.6248 0.0288 32 1 2.1462 -4.6217 -4.0312 33 1 4.6598 -5.4625 -5.0330 34 1 4.0711 -4.0891 -0.8991 35 1 3.3817 -2.9990 -2.1807 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193990414.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:41 Heat of formation + Delta-G solvation = -49.094436 kcal Electronic energy + Delta-G solvation = -21398.197884 eV Core-core repulsion = 18001.499953 eV Total energy + Delta-G solvation = -3396.697931 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.63671 -40.21343 -38.79502 -37.45833 -35.87120 -34.14912 -33.80818 -32.46301 -30.16838 -28.20222 -27.08093 -27.06520 -24.60243 -22.73301 -21.78067 -20.24294 -19.32642 -18.31808 -17.63268 -17.09185 -16.96887 -16.68457 -16.14297 -15.90209 -15.76716 -15.26055 -14.79959 -14.45441 -14.36504 -14.08070 -13.78408 -13.46631 -13.42649 -13.34818 -12.86902 -12.85895 -12.72574 -12.59939 -12.49672 -12.24709 -12.20818 -11.79587 -11.38090 -10.96498 -10.63726 -10.27223 -10.04015 -9.74036 -9.56454 -8.25485 -6.42921 -0.25957 0.07983 1.00396 1.49466 1.52069 1.58766 1.69058 1.88691 2.41924 2.58400 2.97119 3.30687 3.65834 3.70918 3.89586 3.91378 4.13788 4.24617 4.35511 4.49594 4.57320 4.58247 4.60230 4.63529 4.75828 4.88602 4.93734 5.08814 5.11484 5.21639 5.23613 5.28286 5.65542 5.73167 5.93150 6.62838 6.74982 7.04946 7.30748 7.43647 8.80438 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.026072 B = 0.004022 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.670940 B = 6959.904946 C = 7431.891241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.041 4.041 3 C -0.054 4.054 4 Cl -0.055 7.055 5 C -0.076 4.076 6 C -0.110 4.110 7 C -0.081 4.081 8 C -0.137 4.137 9 C 0.565 3.435 10 O -0.582 6.582 11 N -0.628 5.628 12 C 0.112 3.888 13 C 0.218 3.782 14 O -0.588 6.588 15 C -0.558 4.558 16 H 0.074 0.926 17 C 0.037 3.963 18 N -0.916 5.916 19 Si 0.967 3.033 20 H -0.284 1.284 21 H -0.266 1.266 22 H -0.277 1.277 23 C 0.097 3.903 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.051 0.949 27 H 0.171 0.829 28 H 0.175 0.825 29 H 0.138 0.862 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.387 0.613 33 H 0.276 0.724 34 H 0.099 0.901 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.918 12.269 6.421 14.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.043 4.043 3 C -0.081 4.081 4 Cl -0.026 7.026 5 C -0.095 4.095 6 C -0.127 4.127 7 C -0.100 4.100 8 C -0.140 4.140 9 C 0.357 3.643 10 O -0.465 6.465 11 N -0.360 5.360 12 C -0.010 4.010 13 C 0.177 3.823 14 O -0.399 6.399 15 C -0.596 4.596 16 H 0.092 0.908 17 C -0.165 4.165 18 N -0.556 5.556 19 Si 0.792 3.208 20 H -0.209 1.209 21 H -0.190 1.190 22 H -0.202 1.202 23 C -0.026 4.026 24 H 0.097 0.903 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.188 0.812 28 H 0.193 0.807 29 H 0.156 0.844 30 H 0.077 0.923 31 H 0.126 0.874 32 H 0.241 0.759 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.802 12.601 7.059 14.713 hybrid contribution 0.519 -0.855 -0.726 1.236 sum 3.321 11.746 6.333 13.751 Atomic orbital electron populations 1.20822 0.89912 1.02655 1.03139 1.19858 0.97289 0.90650 0.96515 1.20762 0.93277 0.86294 1.07718 1.98349 1.77000 1.30258 1.96958 1.21611 0.90961 1.00828 0.96095 1.21450 1.02161 0.90035 0.99100 1.21716 0.91932 1.00706 0.95617 1.19706 0.94876 0.91692 1.07735 1.18317 0.84776 0.83683 0.77561 1.90682 1.23094 1.85258 1.47455 1.50161 1.27907 1.08709 1.49265 1.23505 1.00118 0.80028 0.97322 1.20135 0.87520 0.91649 0.82961 1.86060 1.41200 1.92705 1.19980 1.21686 1.25040 1.04125 1.08705 0.90831 1.25710 0.96860 0.99119 0.94763 1.69464 1.40413 1.33646 1.12046 0.85469 0.78446 0.79197 0.77692 1.20894 1.19037 1.20216 1.24193 0.88834 0.98565 0.90964 0.90338 0.89714 0.92981 0.81190 0.80747 0.84433 0.92263 0.87391 0.75857 0.91451 0.88279 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.42 8.33 71.24 0.59 -2.82 16 2 C -0.04 -1.29 5.91 -19.58 -0.12 -1.41 16 3 C -0.05 -1.34 6.31 22.29 0.14 -1.20 16 4 Cl -0.05 -1.18 27.19 -2.72 -0.07 -1.25 16 5 C -0.08 -1.50 9.82 22.35 0.22 -1.28 16 6 C -0.11 -2.21 10.03 22.23 0.22 -1.99 16 7 C -0.08 -2.24 8.89 22.53 0.20 -2.04 16 8 C -0.14 -4.69 5.75 -20.09 -0.12 -4.81 16 9 C 0.57 23.52 7.26 86.79 0.63 24.15 16 10 O -0.58 -27.03 15.35 -3.85 -0.06 -27.09 16 11 N -0.63 -26.28 3.57 -843.01 -3.01 -29.29 16 12 C 0.11 4.82 8.23 86.49 0.71 5.54 16 13 C 0.22 10.24 1.40 -10.88 -0.02 10.22 16 14 O -0.59 -30.42 13.49 -148.98 -2.01 -32.43 16 15 C -0.56 -26.91 8.61 25.60 0.22 -26.69 16 16 H 0.07 3.43 7.81 -2.91 -0.02 3.40 16 17 C 0.04 1.74 5.39 84.65 0.46 2.19 16 18 N -0.92 -44.85 11.20 21.45 0.24 -44.61 16 19 Si 0.97 38.07 29.54 68.60 2.03 40.09 16 20 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 21 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 22 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 23 C 0.10 3.96 5.99 86.44 0.52 4.47 16 24 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.08 2.25 6.67 -2.39 -0.02 2.23 16 26 H 0.05 1.91 6.64 -2.39 -0.02 1.90 16 27 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 28 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 29 H 0.14 3.70 6.25 -2.91 -0.02 3.68 16 30 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.11 4.13 8.09 -2.39 -0.02 4.11 16 32 H 0.39 20.21 6.60 -74.06 -0.49 19.72 16 33 H 0.28 12.86 8.31 -92.71 -0.77 12.09 16 34 H 0.10 3.69 7.77 -2.39 -0.02 3.68 16 35 H 0.06 2.71 8.10 -2.38 -0.02 2.69 16 Total: -1.00 -58.75 312.20 1.43 -57.33 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: 0.65 Total: 32.91 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 3.67 Total: 4.34 kcal Atomic # 7 Polarization: -71.13 SS G_CDS: -2.77 Total: -73.91 kcal Atomic # 8 Polarization: -57.44 SS G_CDS: -2.07 Total: -59.51 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.09 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.07 Total: -1.25 kcal Total: -58.75 1.43 -57.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193990414.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.234 kcal (2) G-P(sol) polarization free energy of solvation -58.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds