Wall clock time and date at job start Tue Mar 31 2020 06:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48505 * 109.46661 * 239.99906 * 3 2 1 5 5 H 1.48501 * 109.47391 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47355 * 119.99761 * 3 2 1 7 7 C 1.38803 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 H 1.09002 * 115.55115 * 8.99836 * 14 13 11 16 16 C 1.52995 * 117.49677 * 223.32934 * 14 13 11 17 17 C 1.52994 * 60.00256 * 252.50804 * 16 14 13 18 18 H 1.08999 * 117.49621 * 107.48501 * 17 16 14 19 19 C 1.50698 * 117.50358 * 252.50873 * 17 16 14 20 20 C 1.38251 * 119.97057 * 8.34779 * 19 17 16 21 21 C 1.38195 * 120.02392 * 179.77124 * 20 19 17 22 22 C 1.38466 * 119.97305 * 0.49935 * 21 20 19 23 23 F 1.35098 * 120.02248 * 179.77353 * 22 21 20 24 24 C 1.38454 * 119.94701 * 359.74981 * 22 21 20 25 25 C 1.38201 * 119.97760 * 0.02562 * 24 22 21 26 26 H 0.96991 * 119.99795 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 28 28 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 29 29 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 30 30 H 1.09001 * 117.50158 * 359.97438 * 16 14 13 31 31 H 1.09004 * 117.49961 * 145.02068 * 16 14 13 32 32 H 1.08003 * 119.98850 * 0.02562 * 20 19 17 33 33 H 1.08007 * 120.01404 * 180.25620 * 21 20 19 34 34 H 1.08005 * 120.00803 * 179.97438 * 24 22 21 35 35 H 1.08002 * 119.98797 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0021 13 7 2.8444 -6.3431 0.0018 14 6 2.3306 -7.7150 -0.0037 15 1 1.2567 -7.8143 -0.1619 16 6 3.0038 -8.7251 0.9275 17 6 3.2342 -8.8055 -0.5828 18 1 4.2109 -8.5020 -0.9597 19 6 2.5716 -9.9348 -1.3288 20 6 1.6555 -10.7449 -0.6839 21 6 1.0437 -11.7779 -1.3682 22 6 1.3562 -12.0079 -2.6974 23 9 0.7621 -13.0203 -3.3661 24 6 2.2776 -11.1991 -3.3407 25 6 2.8848 -10.1638 -2.6556 26 1 -0.4849 0.8400 -0.0004 27 1 3.1246 -3.7313 0.8905 28 1 3.1246 -3.7313 -0.8894 29 1 3.8011 -6.1834 0.0015 30 1 3.8292 -8.3691 1.5440 31 1 2.3729 -9.4893 1.3817 32 1 1.4149 -10.5678 0.3540 33 1 0.3250 -12.4081 -0.8654 34 1 2.5224 -11.3779 -4.3774 35 1 3.6033 -9.5325 -3.1574 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194977616.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:24 Heat of formation + Delta-G solvation = -35.605652 kcal Electronic energy + Delta-G solvation = -19468.249701 eV Core-core repulsion = 16086.553183 eV Total energy + Delta-G solvation = -3381.696518 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.14671 -40.14849 -39.03061 -36.96764 -33.11595 -32.44817 -31.48092 -30.33306 -28.85606 -25.51519 -24.17117 -23.24519 -22.27076 -20.82197 -20.48652 -18.11703 -17.83772 -16.99523 -16.52328 -16.10658 -15.83245 -15.75829 -14.99091 -14.82543 -14.80443 -14.14507 -13.89318 -13.68061 -13.31886 -13.08277 -12.92107 -12.71186 -12.41973 -12.26931 -11.88261 -11.33495 -11.30130 -11.07073 -11.05264 -10.82584 -10.72222 -9.85334 -9.51727 -9.42965 -9.09749 -9.05811 -8.46896 -8.27403 -6.52927 -6.23578 -3.94698 0.78110 0.91426 2.85746 2.91010 3.20058 3.22157 3.26076 3.28700 3.59683 3.82697 3.97114 4.18318 4.32402 4.41529 4.50829 4.59813 4.67391 4.85436 4.91783 5.03275 5.11539 5.15698 5.40905 5.53952 5.60060 5.61348 5.75670 5.82520 5.83531 5.87129 5.94289 6.08945 6.21038 6.53612 6.57146 7.56909 7.59730 8.32853 8.51496 9.21549 10.83806 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.034717 B = 0.002394 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.320689 B =11694.878008 C =11888.690519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.058 6.058 10 C -0.153 4.153 11 C 0.536 3.464 12 O -0.513 6.513 13 N -0.711 5.711 14 C 0.107 3.893 15 H 0.140 0.860 16 C -0.186 4.186 17 C -0.131 4.131 18 H 0.118 0.882 19 C -0.056 4.056 20 C -0.091 4.091 21 C -0.149 4.149 22 C 0.090 3.910 23 F -0.142 7.142 24 C -0.150 4.150 25 C -0.083 4.083 26 H 0.269 0.731 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.400 0.600 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.966 -22.646 -2.061 24.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.323 3.677 12 O -0.386 6.386 13 N -0.363 5.363 14 C 0.000 4.000 15 H 0.157 0.843 16 C -0.225 4.225 17 C -0.150 4.150 18 H 0.136 0.864 19 C -0.056 4.056 20 C -0.109 4.109 21 C -0.167 4.167 22 C 0.071 3.929 23 F -0.121 7.121 24 C -0.169 4.169 25 C -0.101 4.101 26 H 0.079 0.921 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.235 0.765 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.748 -22.859 -2.086 23.926 hybrid contribution 2.418 1.091 -0.180 2.659 sum 9.166 -21.769 -2.265 23.728 Atomic orbital electron populations 1.70004 1.05958 1.27623 1.46680 1.24997 0.95037 0.99045 0.94496 0.86218 0.79235 0.81206 0.78803 1.19932 1.20796 1.19923 1.22823 0.94876 0.91627 1.59187 0.90943 1.85421 1.04730 0.96296 1.96735 1.23535 1.06736 0.95056 1.05063 1.20365 0.86506 0.86163 0.74684 1.90707 1.15350 1.85465 1.47082 1.45458 1.09841 1.04031 1.76932 1.21704 0.98102 0.78795 1.01393 0.84255 1.23655 1.04284 1.02762 0.91753 1.21558 1.00716 0.97341 0.95434 0.86410 1.19145 0.97063 0.95598 0.93815 1.20971 0.95574 0.93970 1.00412 1.21137 1.02266 1.00241 0.93094 1.17745 0.96006 0.88084 0.91078 1.91497 1.82375 1.57743 1.80455 1.21139 0.98048 0.96580 1.01134 1.20849 0.99275 0.96492 0.93475 0.92086 0.89063 0.89072 0.76533 0.87823 0.87603 0.84656 0.84647 0.84671 0.84860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -15.11 9.50 30.94 0.29 -14.82 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 10 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 11 C 0.54 9.65 7.85 -10.98 -0.09 9.57 16 12 O -0.51 -11.36 15.43 5.55 0.09 -11.28 16 13 N -0.71 -8.93 5.57 -53.81 -0.30 -9.23 16 14 C 0.11 1.19 6.07 -67.93 -0.41 0.78 16 15 H 0.14 1.86 7.40 -51.93 -0.38 1.48 16 16 C -0.19 -1.49 9.78 -26.74 -0.26 -1.75 16 17 C -0.13 -1.09 5.96 -91.78 -0.55 -1.64 16 18 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 19 C -0.06 -0.49 5.61 -104.62 -0.59 -1.08 16 20 C -0.09 -0.78 9.30 -39.59 -0.37 -1.14 16 21 C -0.15 -1.30 10.03 -39.51 -0.40 -1.70 16 22 C 0.09 0.87 7.30 -39.42 -0.29 0.59 16 23 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 24 C -0.15 -1.31 10.03 -39.52 -0.40 -1.71 16 25 C -0.08 -0.70 9.73 -39.60 -0.39 -1.09 16 26 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 28 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 29 H 0.40 3.76 8.83 -40.82 -0.36 3.40 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.11 0.74 6.17 -51.93 -0.32 0.41 16 32 H 0.14 0.93 6.01 -52.48 -0.32 0.62 16 33 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 34 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 327.01 15.07 4.93 4.93 Total: -1.00 -34.02 327.01 -8.94 -42.96 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -3.88 Total: 1.71 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -3.31 Total: -14.77 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.43 Total: -34.49 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.02 -8.94 -42.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194977616.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.352 kcal (2) G-P(sol) polarization free energy of solvation -34.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds