Wall clock time and date at job start Tue Mar 31 2020 06:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48505 * 109.46661 * 239.99906 * 3 2 1 5 5 H 1.48501 * 109.47391 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47355 * 119.99761 * 3 2 1 7 7 C 1.38803 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 H 1.09002 * 115.55115 * 8.99836 * 14 13 11 16 16 C 1.52995 * 117.49677 * 223.32934 * 14 13 11 17 17 C 1.52994 * 60.00256 * 252.50804 * 16 14 13 18 18 H 1.08999 * 117.49621 * 107.48501 * 17 16 14 19 19 C 1.50698 * 117.50358 * 252.50873 * 17 16 14 20 20 C 1.38251 * 119.97057 * 8.34779 * 19 17 16 21 21 C 1.38195 * 120.02392 * 179.77124 * 20 19 17 22 22 C 1.38466 * 119.97305 * 0.49935 * 21 20 19 23 23 F 1.35098 * 120.02248 * 179.77353 * 22 21 20 24 24 C 1.38454 * 119.94701 * 359.74981 * 22 21 20 25 25 C 1.38201 * 119.97760 * 0.02562 * 24 22 21 26 26 H 0.96991 * 119.99795 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 28 28 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 29 29 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 30 30 H 1.09001 * 117.50158 * 359.97438 * 16 14 13 31 31 H 1.09004 * 117.49961 * 145.02068 * 16 14 13 32 32 H 1.08003 * 119.98850 * 0.02562 * 20 19 17 33 33 H 1.08007 * 120.01404 * 180.25620 * 21 20 19 34 34 H 1.08005 * 120.00803 * 179.97438 * 24 22 21 35 35 H 1.08002 * 119.98797 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0021 13 7 2.8444 -6.3431 0.0018 14 6 2.3306 -7.7150 -0.0037 15 1 1.2567 -7.8143 -0.1619 16 6 3.0038 -8.7251 0.9275 17 6 3.2342 -8.8055 -0.5828 18 1 4.2109 -8.5020 -0.9597 19 6 2.5716 -9.9348 -1.3288 20 6 1.6555 -10.7449 -0.6839 21 6 1.0437 -11.7779 -1.3682 22 6 1.3562 -12.0079 -2.6974 23 9 0.7621 -13.0203 -3.3661 24 6 2.2776 -11.1991 -3.3407 25 6 2.8848 -10.1638 -2.6556 26 1 -0.4849 0.8400 -0.0004 27 1 3.1246 -3.7313 0.8905 28 1 3.1246 -3.7313 -0.8894 29 1 3.8011 -6.1834 0.0015 30 1 3.8292 -8.3691 1.5440 31 1 2.3729 -9.4893 1.3817 32 1 1.4149 -10.5678 0.3540 33 1 0.3250 -12.4081 -0.8654 34 1 2.5224 -11.3779 -4.3774 35 1 3.6033 -9.5325 -3.1574 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194977616.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:23 Heat of formation + Delta-G solvation = -56.979545 kcal Electronic energy + Delta-G solvation = -19469.176542 eV Core-core repulsion = 16086.553183 eV Total energy + Delta-G solvation = -3382.623359 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.90748 -41.04838 -40.11938 -37.88148 -34.58118 -34.27913 -32.12433 -31.27808 -30.13551 -27.65891 -24.83911 -23.96078 -23.18658 -21.79120 -21.46072 -19.84470 -18.76712 -18.03924 -17.66462 -17.03929 -16.86882 -16.63316 -16.59657 -16.38144 -15.91047 -15.48662 -14.88041 -14.53865 -14.49592 -14.31427 -13.94274 -13.72779 -13.52767 -13.24659 -13.16283 -12.86114 -12.62610 -12.51579 -12.34291 -11.97913 -11.75543 -11.45746 -11.11985 -10.98664 -10.27032 -10.07761 -10.00293 -9.28667 -8.66016 -8.33764 -6.11979 0.07761 0.26961 1.26776 1.44825 1.47204 1.55096 1.56721 2.17625 2.28605 2.49588 3.00353 3.08580 3.28925 3.32126 3.63161 3.75546 3.76779 3.91533 3.95454 4.00361 4.20659 4.30737 4.32310 4.50517 4.51972 4.75080 4.92945 4.98189 5.00546 5.12232 5.17931 5.28419 5.42562 5.49229 5.56944 5.91086 6.20481 6.49020 7.07470 7.23902 8.75205 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.034717 B = 0.002394 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.320689 B =11694.878008 C =11888.690519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.153 6.153 10 C -0.128 4.128 11 C 0.537 3.463 12 O -0.565 6.565 13 N -0.683 5.683 14 C 0.071 3.929 15 H 0.111 0.889 16 C -0.164 4.164 17 C -0.108 4.108 18 H 0.140 0.860 19 C -0.069 4.069 20 C -0.096 4.096 21 C -0.156 4.156 22 C 0.070 3.930 23 F -0.151 7.151 24 C -0.156 4.156 25 C -0.086 4.086 26 H 0.271 0.729 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.420 0.580 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.969 -23.028 -1.801 26.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.074 5.926 10 C -0.279 4.279 11 C 0.324 3.676 12 O -0.443 6.443 13 N -0.335 5.335 14 C -0.035 4.035 15 H 0.129 0.871 16 C -0.202 4.202 17 C -0.127 4.127 18 H 0.157 0.843 19 C -0.069 4.069 20 C -0.114 4.114 21 C -0.175 4.175 22 C 0.051 3.949 23 F -0.130 7.130 24 C -0.175 4.175 25 C -0.104 4.104 26 H 0.080 0.920 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.257 0.743 30 H 0.140 0.860 31 H 0.135 0.865 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.815 -23.292 -1.825 25.341 hybrid contribution 1.523 1.027 -0.271 1.857 sum 11.338 -22.265 -2.096 25.073 Atomic orbital electron populations 1.70179 1.08006 1.28672 1.47998 1.26143 0.95962 1.03375 0.93766 0.85002 0.77789 0.75664 0.79533 1.18630 1.20535 1.18575 1.23178 0.95386 0.91940 1.58879 0.89757 1.85619 1.10629 0.99309 1.97067 1.23363 1.03549 0.94000 1.07037 1.20086 0.86209 0.86617 0.74727 1.90695 1.17540 1.86007 1.50027 1.45095 1.10114 1.03620 1.74692 1.21726 0.97503 0.78420 1.05871 0.87130 1.23777 1.03873 1.00683 0.91877 1.21591 1.00329 0.95016 0.95753 0.84252 1.19349 0.97407 0.95928 0.94248 1.21198 0.95279 0.93711 1.01189 1.21353 1.02546 1.00598 0.92967 1.18041 0.96778 0.88437 0.91685 1.91470 1.82646 1.58207 1.80683 1.21371 0.97725 0.96450 1.01950 1.21116 0.99401 0.96451 0.93444 0.92013 0.86903 0.86990 0.74262 0.86046 0.86465 0.83256 0.83417 0.83280 0.82968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.87 13.22 21.65 0.29 -55.58 16 2 C 0.01 0.69 5.49 84.86 0.47 1.16 16 3 Si 1.00 43.08 29.55 68.60 2.03 45.10 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 7 C -0.55 -30.77 9.50 67.96 0.65 -30.12 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 9 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 10 C -0.13 -4.88 6.16 71.24 0.44 -4.44 16 11 C 0.54 19.05 7.85 87.66 0.69 19.74 16 12 O -0.56 -25.77 15.43 -3.04 -0.05 -25.82 16 13 N -0.68 -15.74 5.57 -442.54 -2.46 -18.20 16 14 C 0.07 1.46 6.07 44.99 0.27 1.73 16 15 H 0.11 2.98 7.40 -2.39 -0.02 2.97 16 16 C -0.16 -2.10 9.78 30.59 0.30 -1.80 16 17 C -0.11 -1.46 5.96 -11.54 -0.07 -1.53 16 18 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 19 C -0.07 -1.08 5.61 -19.86 -0.11 -1.19 16 20 C -0.10 -1.49 9.30 22.26 0.21 -1.28 16 21 C -0.16 -2.60 10.03 22.31 0.22 -2.38 16 22 C 0.07 1.31 7.30 22.38 0.16 1.47 16 23 F -0.15 -3.16 17.27 44.97 0.78 -2.39 16 24 C -0.16 -2.54 10.03 22.31 0.22 -2.32 16 25 C -0.09 -1.28 9.73 22.26 0.22 -1.07 16 26 H 0.27 15.44 8.31 -92.72 -0.77 14.67 16 27 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 28 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 29 H 0.42 6.39 8.83 -92.71 -0.82 5.58 16 30 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.12 1.26 6.17 -2.38 -0.01 1.25 16 32 H 0.15 1.78 6.01 -2.91 -0.02 1.76 16 33 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 35 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -76.94 327.01 3.39 -73.55 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.31 Total: 14.92 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: 3.66 Total: -22.01 kcal Atomic # 7 Polarization: -71.60 SS G_CDS: -2.18 Total: -73.78 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.05 Total: -25.82 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.78 Total: -2.39 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -76.94 3.39 -73.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194977616.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.570 kcal (2) G-P(sol) polarization free energy of solvation -76.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds