Wall clock time and date at job start Tue Mar 31 2020 06:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86791 * 120.00049 * 2 1 4 4 H 1.48507 * 109.47141 * 239.99550 * 3 2 1 5 5 H 1.48499 * 109.47547 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47374 * 120.00244 * 3 2 1 7 7 C 1.38804 * 119.99620 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99745 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00140 * 359.97438 * 7 2 1 10 10 C 1.81003 * 100.00044 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47351 * 180.02562 * 10 9 7 12 12 O 1.21291 * 119.99534 * 4.04119 * 11 10 9 13 13 N 1.34774 * 120.00121 * 184.04252 * 11 10 9 14 14 C 1.46932 * 120.55672 * 340.28085 * 13 11 10 15 15 C 1.53428 * 107.78038 * 224.60363 * 14 13 11 16 16 C 1.52849 * 108.86616 * 296.77596 * 15 14 13 17 17 C 1.50596 * 110.50842 * 51.44046 * 16 15 14 18 18 C 1.38566 * 118.92068 * 159.44027 * 17 16 15 19 19 C 1.38097 * 120.34902 * 179.77642 * 18 17 16 20 20 C 1.38309 * 120.17496 * 359.95610 * 19 18 17 21 21 C 1.38207 * 119.87685 * 0.08351 * 20 19 18 22 22 F 1.35097 * 120.00390 * 180.02562 * 21 20 19 23 23 C 1.38491 * 121.50363 * 339.29284 * 17 16 15 24 24 H 0.97003 * 120.00031 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46913 * 60.00132 * 10 9 7 26 26 H 1.08997 * 109.47171 * 300.00275 * 10 9 7 27 27 H 1.09001 * 109.79632 * 105.04153 * 14 13 11 28 28 H 1.08996 * 109.84978 * 344.20634 * 14 13 11 29 29 H 1.09000 * 109.57285 * 176.96494 * 15 14 13 30 30 H 1.09004 * 109.67744 * 56.65201 * 15 14 13 31 31 H 1.08995 * 109.26905 * 291.17738 * 16 15 14 32 32 H 1.08997 * 109.24186 * 171.68558 * 16 15 14 33 33 H 1.07996 * 119.82759 * 359.79802 * 18 17 16 34 34 H 1.08010 * 119.91088 * 179.97438 * 19 18 17 35 35 H 1.08002 * 120.05839 * 179.80328 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5157 -3.8915 0.0029 11 6 1.9872 -5.3028 0.0036 12 8 0.7933 -5.5032 -0.0707 13 7 2.8412 -6.3421 0.0867 14 6 4.2609 -6.1713 -0.2513 15 6 4.6828 -7.3644 -1.1188 16 6 4.5467 -8.6458 -0.2968 17 6 3.1775 -8.7312 0.3244 18 6 2.7031 -9.9673 0.7333 19 6 1.4536 -10.0789 1.3108 20 6 0.6660 -8.9556 1.4861 21 6 1.1306 -7.7188 1.0806 22 9 0.3636 -6.6198 1.2511 23 6 2.3895 -7.6055 0.4967 24 1 -0.4850 0.8401 -0.0004 25 1 3.1243 -3.7307 0.8928 26 1 3.1243 -3.7323 -0.8871 27 1 4.8574 -6.1489 0.6608 28 1 4.4002 -5.2437 -0.8063 29 1 5.7195 -7.2398 -1.4317 30 1 4.0408 -7.4245 -1.9976 31 1 5.3000 -8.6495 0.4910 32 1 4.7014 -9.5074 -0.9463 33 1 3.3138 -10.8479 0.6001 34 1 1.0907 -11.0460 1.6266 35 1 -0.3122 -9.0456 1.9351 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195254568.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:16 Heat of formation + Delta-G solvation = -24.518398 kcal Electronic energy + Delta-G solvation = -21320.576918 eV Core-core repulsion = 17939.361179 eV Total energy + Delta-G solvation = -3381.215738 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.45496 -40.67853 -38.52600 -36.33278 -33.53204 -32.44256 -31.08212 -30.05489 -28.62321 -25.81825 -25.46699 -23.49860 -22.98860 -20.60358 -19.44535 -18.05787 -17.43231 -17.03946 -16.77131 -15.65609 -15.35013 -15.15124 -14.96793 -14.81396 -14.40798 -14.13339 -13.96329 -13.70785 -13.39298 -12.97691 -12.80087 -12.64343 -12.28359 -12.09261 -11.46472 -11.40799 -11.15967 -11.06892 -11.04011 -10.82808 -10.78255 -10.05547 -9.83601 -9.14461 -9.06854 -8.55056 -8.26405 -7.79658 -6.52393 -6.22664 -3.93992 1.11764 1.23518 2.69545 2.90459 3.22497 3.22758 3.28087 3.50914 3.58674 4.18067 4.23960 4.43915 4.61206 4.70800 4.78939 4.85085 5.02864 5.12261 5.12405 5.21464 5.34686 5.37759 5.43887 5.57588 5.61586 5.69549 5.82592 5.90806 5.98071 6.04308 6.08059 6.23243 6.33979 6.53840 6.97552 7.33808 7.57808 8.33453 8.37080 9.22227 10.84731 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.028358 B = 0.004093 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.130470 B = 6839.116838 C = 7678.470268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.058 6.058 10 C -0.143 4.143 11 C 0.500 3.500 12 O -0.451 6.451 13 N -0.563 5.563 14 C 0.105 3.895 15 C -0.137 4.137 16 C -0.074 4.074 17 C -0.101 4.101 18 C -0.110 4.110 19 C -0.123 4.123 20 C -0.135 4.135 21 C 0.074 3.926 22 F -0.091 7.091 23 C 0.141 3.859 24 H 0.269 0.731 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.620 -19.906 0.663 22.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.169 5.831 10 C -0.294 4.294 11 C 0.289 3.711 12 O -0.321 6.321 13 N -0.289 5.289 14 C -0.017 4.017 15 C -0.175 4.175 16 C -0.111 4.111 17 C -0.105 4.105 18 C -0.129 4.129 19 C -0.142 4.142 20 C -0.155 4.155 21 C 0.051 3.949 22 F -0.069 7.069 23 C 0.044 3.956 24 H 0.079 0.921 25 H 0.108 0.892 26 H 0.110 0.890 27 H 0.094 0.906 28 H 0.115 0.885 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.635 -19.890 0.585 21.692 hybrid contribution 1.811 1.463 0.070 2.329 sum 10.446 -18.428 0.655 21.193 Atomic orbital electron populations 1.70008 1.05969 1.27616 1.46627 1.24988 0.95024 0.99015 0.94465 0.86218 0.79241 0.81198 0.78810 1.19913 1.20781 1.19912 1.22808 0.94860 0.91551 1.59266 0.90938 1.85434 1.04655 0.96309 1.96717 1.23508 1.06644 0.94395 1.04819 1.20525 0.86213 0.86145 0.78250 1.90874 1.15741 1.84647 1.40816 1.45875 1.10247 1.06918 1.65834 1.21956 0.79908 0.99968 0.99858 1.21893 1.02658 0.94178 0.98757 1.20386 0.93009 0.98628 0.99091 1.19273 0.97163 0.91175 1.02849 1.20859 0.96220 0.96221 0.99554 1.20804 0.94513 0.97956 1.00931 1.21051 1.01355 0.90863 1.02217 1.17591 0.89459 0.84977 1.02869 1.91804 1.74736 1.49142 1.91244 1.17662 0.93366 0.85956 0.98652 0.92086 0.89233 0.89050 0.90605 0.88537 0.89533 0.90750 0.90227 0.90023 0.85440 0.85328 0.84662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -15.32 9.50 30.94 0.29 -15.02 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.59 20.58 -107.50 -2.21 -3.80 16 10 C -0.14 -2.97 5.03 36.00 0.18 -2.79 16 11 C 0.50 10.06 7.01 -10.99 -0.08 9.99 16 12 O -0.45 -10.67 11.51 5.55 0.06 -10.61 16 13 N -0.56 -8.96 2.97 -112.78 -0.34 -9.30 16 14 C 0.11 1.19 6.10 -3.58 -0.02 1.16 16 15 C -0.14 -1.19 6.11 -26.59 -0.16 -1.35 16 16 C -0.07 -0.61 5.78 -28.01 -0.16 -0.77 16 17 C -0.10 -1.17 5.76 -104.46 -0.60 -1.77 16 18 C -0.11 -1.08 9.66 -39.51 -0.38 -1.46 16 19 C -0.12 -1.26 10.03 -39.61 -0.40 -1.66 16 20 C -0.14 -1.77 10.03 -39.57 -0.40 -2.17 16 21 C 0.07 1.24 6.89 -39.22 -0.27 0.97 16 22 F -0.09 -1.91 12.09 2.25 0.03 -1.89 16 23 C 0.14 2.16 6.29 -83.52 -0.53 1.64 16 24 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 25 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 26 H 0.09 1.71 7.17 -51.92 -0.37 1.34 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.10 1.04 6.40 -51.93 -0.33 0.71 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 33 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 35 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 307.61 15.07 4.64 4.64 Total: -1.00 -35.01 307.61 -8.78 -43.79 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -4.05 Total: -2.46 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -2.62 Total: -11.21 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.40 Total: -34.82 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.06 Total: -10.61 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.03 Total: -1.89 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.01 -8.78 -43.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195254568.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.271 kcal (2) G-P(sol) polarization free energy of solvation -35.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds