Wall clock time and date at job start Tue Mar 31 2020 06:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86791 * 120.00049 * 2 1 4 4 H 1.48507 * 109.47141 * 239.99550 * 3 2 1 5 5 H 1.48499 * 109.47547 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47374 * 120.00244 * 3 2 1 7 7 C 1.38804 * 119.99620 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99745 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00140 * 359.97438 * 7 2 1 10 10 C 1.81003 * 100.00044 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47351 * 180.02562 * 10 9 7 12 12 O 1.21291 * 119.99534 * 4.04119 * 11 10 9 13 13 N 1.34774 * 120.00121 * 184.04252 * 11 10 9 14 14 C 1.46932 * 120.55672 * 340.28085 * 13 11 10 15 15 C 1.53428 * 107.78038 * 224.60363 * 14 13 11 16 16 C 1.52849 * 108.86616 * 296.77596 * 15 14 13 17 17 C 1.50596 * 110.50842 * 51.44046 * 16 15 14 18 18 C 1.38566 * 118.92068 * 159.44027 * 17 16 15 19 19 C 1.38097 * 120.34902 * 179.77642 * 18 17 16 20 20 C 1.38309 * 120.17496 * 359.95610 * 19 18 17 21 21 C 1.38207 * 119.87685 * 0.08351 * 20 19 18 22 22 F 1.35097 * 120.00390 * 180.02562 * 21 20 19 23 23 C 1.38491 * 121.50363 * 339.29284 * 17 16 15 24 24 H 0.97003 * 120.00031 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46913 * 60.00132 * 10 9 7 26 26 H 1.08997 * 109.47171 * 300.00275 * 10 9 7 27 27 H 1.09001 * 109.79632 * 105.04153 * 14 13 11 28 28 H 1.08996 * 109.84978 * 344.20634 * 14 13 11 29 29 H 1.09000 * 109.57285 * 176.96494 * 15 14 13 30 30 H 1.09004 * 109.67744 * 56.65201 * 15 14 13 31 31 H 1.08995 * 109.26905 * 291.17738 * 16 15 14 32 32 H 1.08997 * 109.24186 * 171.68558 * 16 15 14 33 33 H 1.07996 * 119.82759 * 359.79802 * 18 17 16 34 34 H 1.08010 * 119.91088 * 179.97438 * 19 18 17 35 35 H 1.08002 * 120.05839 * 179.80328 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5157 -3.8915 0.0029 11 6 1.9872 -5.3028 0.0036 12 8 0.7933 -5.5032 -0.0707 13 7 2.8412 -6.3421 0.0867 14 6 4.2609 -6.1713 -0.2513 15 6 4.6828 -7.3644 -1.1188 16 6 4.5467 -8.6458 -0.2968 17 6 3.1775 -8.7312 0.3244 18 6 2.7031 -9.9673 0.7333 19 6 1.4536 -10.0789 1.3108 20 6 0.6660 -8.9556 1.4861 21 6 1.1306 -7.7188 1.0806 22 9 0.3636 -6.6198 1.2511 23 6 2.3895 -7.6055 0.4967 24 1 -0.4850 0.8401 -0.0004 25 1 3.1243 -3.7307 0.8928 26 1 3.1243 -3.7323 -0.8871 27 1 4.8574 -6.1489 0.6608 28 1 4.4002 -5.2437 -0.8063 29 1 5.7195 -7.2398 -1.4317 30 1 4.0408 -7.4245 -1.9976 31 1 5.3000 -8.6495 0.4910 32 1 4.7014 -9.5074 -0.9463 33 1 3.3138 -10.8479 0.6001 34 1 1.0907 -11.0460 1.6266 35 1 -0.3122 -9.0456 1.9351 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195254568.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:16 Heat of formation + Delta-G solvation = -46.573514 kcal Electronic energy + Delta-G solvation = -21321.533299 eV Core-core repulsion = 17939.361179 eV Total energy + Delta-G solvation = -3382.172120 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.77489 -41.81205 -39.76322 -37.38633 -34.62663 -34.51606 -32.20740 -31.13663 -29.90234 -27.72075 -26.67909 -24.39952 -24.08194 -21.66128 -20.56278 -19.77151 -19.04444 -18.17503 -17.91233 -16.97587 -16.90532 -16.48787 -16.41713 -16.22146 -15.61380 -15.49309 -15.06765 -14.77275 -14.51491 -14.27779 -14.22839 -14.08215 -13.27756 -13.20417 -12.95408 -12.88673 -12.68673 -12.51949 -12.21510 -11.96896 -11.78166 -11.65985 -11.21403 -11.14969 -10.54628 -10.33415 -9.54193 -8.91233 -8.72008 -8.37188 -6.17284 0.16760 0.21863 1.15079 1.39596 1.42873 1.48342 1.53046 1.88606 2.24318 2.64900 2.96973 3.12378 3.32026 3.59087 3.76034 3.78181 3.95878 4.02493 4.13812 4.18899 4.33075 4.33869 4.37772 4.53027 4.63305 4.77102 4.98176 5.01298 5.05946 5.15480 5.26965 5.35983 5.38099 5.43799 5.53860 5.99638 6.10272 6.16691 6.94503 7.03278 8.72097 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.028358 B = 0.004093 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.130470 B = 6839.116838 C = 7678.470268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 1.001 2.999 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.085 0.915 9 S -0.151 6.151 10 C -0.114 4.114 11 C 0.495 3.505 12 O -0.500 6.500 13 N -0.558 5.558 14 C 0.091 3.909 15 C -0.131 4.131 16 C -0.073 4.073 17 C -0.096 4.096 18 C -0.098 4.098 19 C -0.109 4.109 20 C -0.148 4.148 21 C 0.021 3.979 22 F -0.130 7.130 23 C 0.107 3.893 24 H 0.272 0.728 25 H 0.103 0.897 26 H 0.113 0.887 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.122 0.878 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.174 0.826 34 H 0.167 0.833 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.571 -22.199 0.447 26.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.823 3.177 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.695 4.695 8 H 0.103 0.897 9 S 0.076 5.924 10 C -0.265 4.265 11 C 0.284 3.716 12 O -0.373 6.373 13 N -0.284 5.284 14 C -0.029 4.029 15 C -0.168 4.168 16 C -0.110 4.110 17 C -0.099 4.099 18 C -0.117 4.117 19 C -0.128 4.128 20 C -0.167 4.167 21 C -0.002 4.002 22 F -0.108 7.108 23 C 0.011 3.989 24 H 0.081 0.919 25 H 0.121 0.879 26 H 0.131 0.869 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.141 0.859 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.129 0.871 33 H 0.191 0.809 34 H 0.185 0.815 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 12.636 -22.236 0.372 25.579 hybrid contribution 0.643 1.910 0.163 2.022 sum 13.279 -20.326 0.535 24.285 Atomic orbital electron populations 1.70189 1.08104 1.28772 1.47800 1.26173 0.95968 1.03418 0.93534 0.84964 0.77783 0.75387 0.79615 1.18397 1.20354 1.18581 1.23158 0.95374 0.91690 1.59290 0.89724 1.85654 1.10344 0.99371 1.97050 1.23287 1.03525 0.93286 1.06409 1.20388 0.86093 0.86827 0.78311 1.90865 1.17755 1.85256 1.43461 1.45768 1.11340 1.06313 1.64939 1.22388 0.77474 1.01642 1.01412 1.21917 1.04202 0.93194 0.97536 1.20558 0.91151 0.99274 0.99982 1.19841 0.98172 0.90332 1.01516 1.21440 0.96096 0.96917 0.97215 1.21307 0.94221 0.98245 0.99019 1.21301 1.02306 0.90649 1.02488 1.18309 0.90691 0.85257 1.05897 1.91696 1.75800 1.51329 1.91978 1.18050 0.93865 0.86699 1.00269 0.91932 0.87860 0.86856 0.88719 0.88529 0.85935 0.92450 0.87823 0.87111 0.80863 0.81537 0.84233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.19 13.22 21.65 0.29 -56.90 16 2 C 0.01 0.80 5.49 84.86 0.47 1.27 16 3 Si 1.00 44.01 29.55 68.60 2.03 46.03 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.55 -31.93 9.50 67.96 0.65 -31.28 16 8 H 0.08 4.54 7.80 -2.91 -0.02 4.52 16 9 S -0.15 -8.78 20.58 -56.49 -1.16 -9.95 16 10 C -0.11 -4.89 5.03 71.24 0.36 -4.53 16 11 C 0.50 20.99 7.01 87.66 0.61 21.61 16 12 O -0.50 -25.67 11.51 -3.06 -0.04 -25.70 16 13 N -0.56 -17.94 2.97 -629.12 -1.87 -19.81 16 14 C 0.09 1.88 6.10 86.44 0.53 2.41 16 15 C -0.13 -1.81 6.11 30.69 0.19 -1.62 16 16 C -0.07 -0.84 5.78 29.76 0.17 -0.67 16 17 C -0.10 -1.92 5.76 -19.76 -0.11 -2.03 16 18 C -0.10 -1.48 9.66 22.31 0.22 -1.26 16 19 C -0.11 -1.90 10.03 22.25 0.22 -1.67 16 20 C -0.15 -3.90 10.03 22.28 0.22 -3.67 16 21 C 0.02 0.73 6.89 22.50 0.15 0.88 16 22 F -0.13 -6.00 12.09 44.97 0.54 -5.45 16 23 C 0.11 3.28 6.29 38.09 0.24 3.52 16 24 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 25 H 0.10 4.08 8.14 -2.39 -0.02 4.06 16 26 H 0.11 4.28 7.17 -2.40 -0.02 4.26 16 27 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.10 1.94 6.40 -2.39 -0.02 1.92 16 29 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.11 0.73 8.12 -2.39 -0.02 0.71 16 33 H 0.17 1.10 8.06 -2.91 -0.02 1.07 16 34 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 35 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -84.35 307.61 4.81 -79.54 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 1.11 Total: 9.29 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: 3.91 Total: -17.06 kcal Atomic # 7 Polarization: -75.12 SS G_CDS: -1.58 Total: -76.71 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.04 Total: -25.70 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 0.54 Total: -5.45 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.95 kcal Total: -84.35 4.81 -79.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195254568.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.970 kcal (2) G-P(sol) polarization free energy of solvation -84.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds