Wall clock time and date at job start Tue Mar 31 2020 06:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34235 * 117.00187 * 2 1 4 4 O 1.20820 * 119.99675 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00069 * 180.02562 * 3 2 1 6 6 N 1.46507 * 109.46950 * 174.96759 * 5 3 2 7 7 C 1.36763 * 119.99859 * 86.25963 * 6 5 3 8 8 H 1.08000 * 120.00004 * 302.39800 * 7 6 5 9 9 C 1.39049 * 120.00326 * 122.39931 * 7 6 5 10 10 N 1.31370 * 120.00266 * 168.29127 * 9 7 6 11 11 Si 1.86798 * 119.99760 * 348.28474 * 9 7 6 12 12 H 1.48504 * 109.46955 * 85.88776 * 11 9 7 13 13 H 1.48498 * 109.47412 * 205.88858 * 11 9 7 14 14 H 1.48497 * 109.47375 * 325.88967 * 11 9 7 15 15 C 1.34775 * 119.99620 * 265.98397 * 6 5 3 16 16 O 1.21848 * 120.00257 * 4.32362 * 15 6 5 17 17 C 1.41279 * 119.99331 * 184.32428 * 15 6 5 18 18 C 1.35805 * 119.99885 * 178.56099 * 17 15 6 19 19 C 1.41508 * 119.99797 * 14.66950 * 18 17 15 20 20 C 1.37119 * 125.48013 * 225.70771 * 19 18 17 21 21 C 1.37412 * 113.21192 * 179.80002 * 20 19 18 22 22 C 1.33886 * 115.13313 * 0.49139 * 21 20 19 23 23 S 1.70603 * 111.02205 * 359.72595 * 22 21 20 24 24 H 1.09000 * 109.47589 * 59.99877 * 1 2 3 25 25 H 1.09003 * 109.47430 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47041 * 299.99386 * 1 2 3 27 27 H 1.09005 * 109.47415 * 54.96802 * 5 3 2 28 28 H 1.08999 * 109.46965 * 294.96575 * 5 3 2 29 29 H 0.97008 * 119.99840 * 180.02562 * 10 9 7 30 30 H 1.07994 * 120.00356 * 358.57058 * 17 15 6 31 31 H 1.07996 * 120.00575 * 194.66200 * 18 17 15 32 32 H 1.07997 * 123.38958 * 359.97438 * 20 19 18 33 33 H 1.07997 * 122.43507 * 180.21710 * 21 20 19 34 34 H 1.07999 * 124.48751 * 179.72311 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9819 2.6745 -0.1216 7 6 4.0968 3.4529 0.9970 8 1 3.2469 3.5900 1.6491 9 6 5.3079 4.0678 1.2948 10 7 5.3639 4.9911 2.2277 11 14 6.8552 3.5809 0.3685 12 1 6.9486 4.3680 -0.8874 13 1 8.0450 3.8545 1.2138 14 1 6.8020 2.1331 0.0424 15 6 4.2563 3.1934 -1.3348 16 8 4.0833 2.5230 -2.3375 17 6 4.7446 4.5146 -1.4439 18 6 5.0488 5.0276 -2.6640 19 6 4.5969 4.3781 -3.8372 20 6 5.3576 4.1233 -4.9492 21 6 4.6646 3.4743 -5.9425 22 6 3.3811 3.2144 -5.6638 23 16 2.9674 3.7748 -4.1064 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 3.9597 0.7049 -0.8424 28 1 3.9522 0.8605 0.9308 29 1 6.2088 5.4203 2.4351 30 1 4.8761 5.1167 -0.5570 31 1 5.6355 5.9311 -2.7390 32 1 6.3976 4.4019 -5.0344 33 1 5.1208 3.1979 -6.8815 34 1 2.6981 2.7162 -6.3359 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255909590.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:58 Heat of formation + Delta-G solvation = -31.484496 kcal Electronic energy + Delta-G solvation = -21894.680928 eV Core-core repulsion = 18500.790327 eV Total energy + Delta-G solvation = -3393.890600 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.11835 -39.15770 -37.26295 -36.00267 -34.88881 -33.32347 -32.08877 -29.35467 -28.03414 -26.62206 -24.83420 -23.90402 -22.04953 -20.42691 -19.25659 -19.06778 -17.73047 -17.15589 -16.43106 -16.16071 -15.94597 -15.34283 -15.05820 -15.00519 -13.97464 -13.79310 -13.49520 -13.02274 -12.96489 -12.84456 -12.47674 -12.34275 -12.11933 -11.87452 -11.70756 -11.58903 -11.38180 -10.96784 -10.78729 -10.41022 -10.27080 -10.20475 -9.98646 -9.33424 -9.08150 -8.69693 -8.08874 -7.52636 -7.11944 -6.55768 -4.41266 0.93940 2.14147 2.51040 2.73166 2.82642 3.08581 3.10252 3.19097 3.25058 3.32860 4.03304 4.21651 4.42682 4.76924 5.31614 5.39163 5.41167 5.47431 5.55962 5.69909 5.74591 5.85674 5.96257 6.00056 6.00591 6.38787 6.43920 6.73199 6.79734 6.81723 7.03046 7.09408 7.47657 7.60481 8.34131 8.38355 8.82432 9.06576 9.48953 10.51107 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.011483 B = 0.008867 C = 0.005551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.844907 B = 3157.177332 C = 5043.370743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.447 3.553 4 O -0.490 6.490 5 C 0.117 3.883 6 N -0.443 5.443 7 C -0.347 4.347 8 H 0.103 0.897 9 C 0.077 3.923 10 N -0.858 5.858 11 Si 0.855 3.145 12 H -0.247 1.247 13 H -0.282 1.282 14 H -0.263 1.263 15 C 0.509 3.491 16 O -0.572 6.572 17 C -0.163 4.163 18 C -0.051 4.051 19 C -0.156 4.156 20 C -0.140 4.140 21 C -0.148 4.148 22 C -0.289 4.289 23 S 0.274 5.726 24 H 0.058 0.942 25 H 0.094 0.906 26 H 0.058 0.942 27 H 0.109 0.891 28 H 0.115 0.885 29 H 0.279 0.721 30 H 0.151 0.849 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.658 -4.273 -8.208 9.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.286 6.286 3 C 0.287 3.713 4 O -0.375 6.375 5 C -0.008 4.008 6 N -0.164 5.164 7 C -0.475 4.475 8 H 0.120 0.880 9 C -0.132 4.132 10 N -0.492 5.492 11 Si 0.679 3.321 12 H -0.172 1.172 13 H -0.208 1.208 14 H -0.187 1.187 15 C 0.303 3.697 16 O -0.458 6.458 17 C -0.187 4.187 18 C -0.073 4.073 19 C -0.275 4.275 20 C -0.170 4.170 21 C -0.181 4.181 22 C -0.427 4.427 23 S 0.546 5.454 24 H 0.076 0.924 25 H 0.112 0.888 26 H 0.077 0.923 27 H 0.127 0.873 28 H 0.133 0.867 29 H 0.090 0.910 30 H 0.169 0.831 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.141 0.859 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.269 -4.211 -7.727 9.781 hybrid contribution 2.066 -0.239 -0.961 2.291 sum -2.204 -4.449 -8.688 10.007 Atomic orbital electron populations 1.23120 0.77576 1.02803 1.02216 1.86514 1.22590 1.34559 1.84952 1.24810 0.93099 0.81093 0.72278 1.90643 1.66718 1.36233 1.43921 1.21049 0.86256 0.88319 1.05214 1.43313 1.59315 1.07316 1.06418 1.19021 0.98341 1.26991 1.03144 0.87963 1.25724 0.97869 0.94748 0.94839 1.69658 1.27716 1.22276 1.29575 0.87270 0.82765 0.81218 0.80807 1.17193 1.20845 1.18735 1.17429 0.80569 0.88477 0.83180 1.90860 1.56966 1.63017 1.34968 1.22622 1.00236 0.96734 0.99061 1.20534 0.97854 0.98923 0.90039 1.22465 0.98902 1.07688 0.98406 1.20559 1.00083 1.03523 0.92882 1.19639 0.94007 1.03839 1.00568 1.25168 1.01692 1.12185 1.03627 1.82937 1.08413 1.49688 1.04408 0.92359 0.88762 0.92276 0.87311 0.86714 0.91050 0.83144 0.85021 0.85092 0.85874 0.83229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.56 101.05 1.07 1.56 16 2 O -0.37 -6.26 10.57 -39.27 -0.41 -6.68 16 3 C 0.45 9.04 8.00 36.00 0.29 9.33 16 4 O -0.49 -11.45 16.06 -18.75 -0.30 -11.75 16 5 C 0.12 2.37 5.99 -5.19 -0.03 2.34 16 6 N -0.44 -10.50 1.42 -119.45 -0.17 -10.67 16 7 C -0.35 -8.92 8.98 -15.05 -0.14 -9.05 16 8 H 0.10 2.91 8.06 -52.49 -0.42 2.48 16 9 C 0.08 1.94 3.96 -17.45 -0.07 1.87 16 10 N -0.86 -22.72 13.95 55.50 0.77 -21.94 16 11 Si 0.85 19.39 24.91 -169.99 -4.23 15.16 16 12 H -0.25 -5.37 5.64 56.52 0.32 -5.05 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 14 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 15 C 0.51 12.04 5.76 -15.10 -0.09 11.95 16 16 O -0.57 -13.59 11.19 5.06 0.06 -13.53 16 17 C -0.16 -3.62 5.72 -39.30 -0.22 -3.85 16 18 C -0.05 -1.00 9.65 -39.21 -0.38 -1.38 16 19 C -0.16 -3.00 4.53 -38.74 -0.18 -3.17 16 20 C -0.14 -2.42 10.25 -40.29 -0.41 -2.83 16 21 C -0.15 -2.38 10.14 -41.41 -0.42 -2.80 16 22 C -0.29 -4.71 10.92 29.20 0.32 -4.39 16 23 S 0.27 5.10 19.62 -107.50 -2.11 2.99 16 24 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 25 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16 27 H 0.11 2.08 7.36 -51.93 -0.38 1.70 16 28 H 0.12 2.07 8.07 -51.93 -0.42 1.65 16 29 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.15 3.50 5.04 -52.49 -0.26 3.24 16 31 H 0.13 2.15 8.06 -52.49 -0.42 1.72 16 32 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 33 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.15 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 305.53 15.07 4.60 4.60 Total: -1.00 -30.30 305.53 -5.72 -36.02 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -3.67 Total: 6.22 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -0.26 Total: -0.43 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.60 Total: -32.61 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -0.66 Total: -31.96 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.23 Total: 15.16 kcal Atomic # 16 Polarization: 5.10 SS G_CDS: -2.11 Total: 2.99 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.30 -5.72 -36.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255909590.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.533 kcal (2) G-P(sol) polarization free energy of solvation -30.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds