Wall clock time and date at job start Tue Mar 31 2020 06:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34235 * 117.00187 * 2 1 4 4 O 1.20820 * 119.99675 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00069 * 180.02562 * 3 2 1 6 6 N 1.46507 * 109.46950 * 174.96759 * 5 3 2 7 7 C 1.36763 * 119.99859 * 86.25963 * 6 5 3 8 8 H 1.08000 * 120.00004 * 302.39800 * 7 6 5 9 9 C 1.39049 * 120.00326 * 122.39931 * 7 6 5 10 10 N 1.31370 * 120.00266 * 168.29127 * 9 7 6 11 11 Si 1.86798 * 119.99760 * 348.28474 * 9 7 6 12 12 H 1.48504 * 109.46955 * 85.88776 * 11 9 7 13 13 H 1.48498 * 109.47412 * 205.88858 * 11 9 7 14 14 H 1.48497 * 109.47375 * 325.88967 * 11 9 7 15 15 C 1.34775 * 119.99620 * 265.98397 * 6 5 3 16 16 O 1.21848 * 120.00257 * 4.32362 * 15 6 5 17 17 C 1.41279 * 119.99331 * 184.32428 * 15 6 5 18 18 C 1.35805 * 119.99885 * 178.56099 * 17 15 6 19 19 C 1.41508 * 119.99797 * 14.66950 * 18 17 15 20 20 C 1.37119 * 125.48013 * 225.70771 * 19 18 17 21 21 C 1.37412 * 113.21192 * 179.80002 * 20 19 18 22 22 C 1.33886 * 115.13313 * 0.49139 * 21 20 19 23 23 S 1.70603 * 111.02205 * 359.72595 * 22 21 20 24 24 H 1.09000 * 109.47589 * 59.99877 * 1 2 3 25 25 H 1.09003 * 109.47430 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47041 * 299.99386 * 1 2 3 27 27 H 1.09005 * 109.47415 * 54.96802 * 5 3 2 28 28 H 1.08999 * 109.46965 * 294.96575 * 5 3 2 29 29 H 0.97008 * 119.99840 * 180.02562 * 10 9 7 30 30 H 1.07994 * 120.00356 * 358.57058 * 17 15 6 31 31 H 1.07996 * 120.00575 * 194.66200 * 18 17 15 32 32 H 1.07997 * 123.38958 * 359.97438 * 20 19 18 33 33 H 1.07997 * 122.43507 * 180.21710 * 21 20 19 34 34 H 1.07999 * 124.48751 * 179.72311 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9819 2.6745 -0.1216 7 6 4.0968 3.4529 0.9970 8 1 3.2469 3.5900 1.6491 9 6 5.3079 4.0678 1.2948 10 7 5.3639 4.9911 2.2277 11 14 6.8552 3.5809 0.3685 12 1 6.9486 4.3680 -0.8874 13 1 8.0450 3.8545 1.2138 14 1 6.8020 2.1331 0.0424 15 6 4.2563 3.1934 -1.3348 16 8 4.0833 2.5230 -2.3375 17 6 4.7446 4.5146 -1.4439 18 6 5.0488 5.0276 -2.6640 19 6 4.5969 4.3781 -3.8372 20 6 5.3576 4.1233 -4.9492 21 6 4.6646 3.4743 -5.9425 22 6 3.3811 3.2144 -5.6638 23 16 2.9674 3.7748 -4.1064 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 3.9597 0.7049 -0.8424 28 1 3.9522 0.8605 0.9308 29 1 6.2088 5.4203 2.4351 30 1 4.8761 5.1167 -0.5570 31 1 5.6355 5.9311 -2.7390 32 1 6.3976 4.4019 -5.0344 33 1 5.1208 3.1979 -6.8815 34 1 2.6981 2.7162 -6.3359 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255909590.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:57 Heat of formation + Delta-G solvation = -49.306584 kcal Electronic energy + Delta-G solvation = -21895.453751 eV Core-core repulsion = 18500.790327 eV Total energy + Delta-G solvation = -3394.663424 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.74127 -40.78371 -38.63617 -37.53976 -36.64745 -34.93380 -33.93350 -30.90801 -29.42784 -27.96896 -26.61406 -25.39274 -23.55789 -21.95856 -21.03715 -20.44334 -19.33274 -18.72699 -18.02357 -17.82516 -17.39909 -16.92345 -16.74667 -16.46579 -15.65727 -15.36664 -15.03685 -14.79437 -14.43099 -14.31502 -13.97879 -13.82476 -13.51499 -13.37273 -13.09947 -13.01815 -12.92619 -12.73457 -12.44087 -12.07612 -11.78308 -11.69459 -11.54604 -11.13336 -10.76495 -10.31568 -9.78694 -9.06569 -8.61826 -8.49331 -6.39866 -0.54916 0.73123 1.09577 1.23106 1.32195 1.35871 1.38045 1.45113 1.69804 1.98697 2.19611 2.50887 2.74120 2.88983 3.99267 4.09258 4.14259 4.28619 4.29790 4.32369 4.36499 4.43598 4.64688 4.66605 4.69467 4.81326 5.05402 5.31300 5.32814 5.33785 5.56372 5.67475 5.71995 5.76326 6.34061 6.79900 6.90913 7.23302 7.67001 8.61140 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.011483 B = 0.008867 C = 0.005551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.844907 B = 3157.177332 C = 5043.370743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.363 6.363 3 C 0.452 3.548 4 O -0.530 6.530 5 C 0.111 3.889 6 N -0.458 5.458 7 C -0.348 4.348 8 H 0.059 0.941 9 C 0.052 3.948 10 N -0.897 5.897 11 Si 0.907 3.093 12 H -0.230 1.230 13 H -0.279 1.279 14 H -0.270 1.270 15 C 0.510 3.490 16 O -0.577 6.577 17 C -0.214 4.214 18 C -0.011 4.011 19 C -0.197 4.197 20 C -0.122 4.122 21 C -0.153 4.153 22 C -0.271 4.271 23 S 0.220 5.780 24 H 0.054 0.946 25 H 0.139 0.861 26 H 0.056 0.944 27 H 0.122 0.878 28 H 0.133 0.867 29 H 0.284 0.716 30 H 0.134 0.866 31 H 0.164 0.836 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.498 -5.360 -11.032 12.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.279 6.279 3 C 0.294 3.706 4 O -0.419 6.419 5 C -0.013 4.013 6 N -0.179 5.179 7 C -0.476 4.476 8 H 0.077 0.923 9 C -0.154 4.154 10 N -0.532 5.532 11 Si 0.730 3.270 12 H -0.154 1.154 13 H -0.204 1.204 14 H -0.194 1.194 15 C 0.304 3.696 16 O -0.464 6.464 17 C -0.238 4.238 18 C -0.032 4.032 19 C -0.315 4.315 20 C -0.153 4.153 21 C -0.185 4.185 22 C -0.409 4.409 23 S 0.492 5.508 24 H 0.073 0.927 25 H 0.157 0.843 26 H 0.075 0.925 27 H 0.140 0.860 28 H 0.150 0.850 29 H 0.094 0.906 30 H 0.151 0.849 31 H 0.181 0.819 32 H 0.175 0.825 33 H 0.176 0.824 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -3.123 -5.319 -10.556 12.226 hybrid contribution 1.561 0.051 -0.317 1.594 sum -1.562 -5.268 -10.874 12.183 Atomic orbital electron populations 1.23510 0.75181 1.05698 1.02012 1.86488 1.24825 1.32474 1.84124 1.24774 0.93182 0.81373 0.71275 1.90627 1.67526 1.37717 1.46004 1.21203 0.86598 0.86890 1.06657 1.43309 1.60405 1.08363 1.05848 1.18587 0.97330 1.28397 1.03281 0.92314 1.26139 0.99960 0.94070 0.95235 1.69739 1.28679 1.23419 1.31374 0.86469 0.79463 0.80535 0.80527 1.15397 1.20449 1.19414 1.17667 0.79925 0.89007 0.82959 1.90839 1.57296 1.63427 1.34845 1.22433 1.04980 0.96717 0.99648 1.20963 0.94484 0.98586 0.89199 1.22596 0.99402 1.10216 0.99295 1.21005 1.01113 1.01437 0.91748 1.20054 0.93756 1.03082 1.01627 1.25519 1.02434 1.10669 1.02252 1.83202 1.09538 1.51034 1.07062 0.92693 0.84253 0.92482 0.86019 0.84974 0.90571 0.84861 0.81890 0.82533 0.82377 0.80488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.56 113.37 1.20 1.93 16 2 O -0.36 -12.04 10.57 -51.46 -0.54 -12.59 16 3 C 0.45 18.57 8.00 71.24 0.57 19.14 16 4 O -0.53 -25.72 16.06 21.98 0.35 -25.36 16 5 C 0.11 4.55 5.99 85.63 0.51 5.06 16 6 N -0.46 -22.19 1.42 -649.98 -0.92 -23.12 16 7 C -0.35 -18.69 8.98 84.12 0.76 -17.93 16 8 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 9 C 0.05 2.69 3.96 84.96 0.34 3.03 16 10 N -0.90 -48.99 13.95 21.68 0.30 -48.69 16 11 Si 0.91 40.11 24.91 68.60 1.71 41.82 16 12 H -0.23 -9.48 5.64 99.48 0.56 -8.92 16 13 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 15 C 0.51 24.20 5.76 84.99 0.49 24.69 16 16 O -0.58 -27.14 11.19 -4.82 -0.05 -27.20 16 17 C -0.21 -9.52 5.72 22.45 0.13 -9.39 16 18 C -0.01 -0.40 9.65 22.51 0.22 -0.18 16 19 C -0.20 -7.12 4.53 22.81 0.10 -7.02 16 20 C -0.12 -3.71 10.25 21.81 0.22 -3.48 16 21 C -0.15 -4.23 10.14 21.08 0.21 -4.02 16 22 C -0.27 -7.92 10.92 66.83 0.73 -7.19 16 23 S 0.22 7.96 19.62 -56.49 -1.11 6.85 16 24 H 0.05 1.43 8.13 -2.39 -0.02 1.41 16 25 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 27 H 0.12 4.61 7.36 -2.38 -0.02 4.59 16 28 H 0.13 4.81 8.07 -2.39 -0.02 4.79 16 29 H 0.28 14.32 8.31 -92.70 -0.77 13.55 16 30 H 0.13 6.35 5.04 -2.91 -0.01 6.34 16 31 H 0.16 4.82 8.06 -2.91 -0.02 4.80 16 32 H 0.16 3.92 8.06 -2.91 -0.02 3.90 16 33 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 34 H 0.18 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -67.41 305.53 6.19 -61.22 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.98 Total: 22.44 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 5.48 Total: 4.63 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -0.62 Total: -71.81 kcal Atomic # 8 Polarization: -64.90 SS G_CDS: -0.24 Total: -65.15 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 1.71 Total: 41.82 kcal Atomic # 16 Polarization: 7.96 SS G_CDS: -1.11 Total: 6.85 kcal Total: -67.41 6.19 -61.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255909590.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.910 kcal (2) G-P(sol) polarization free energy of solvation -67.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds