Wall clock time and date at job start Tue Mar 31 2020 07:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86797 * 120.00018 * 2 1 4 4 H 1.48501 * 109.47288 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47312 * 59.99966 * 3 2 1 6 6 H 1.48498 * 109.47332 * 300.00025 * 3 2 1 7 7 C 1.40042 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00594 * 25.45800 * 7 2 1 9 9 C 1.46380 * 119.99943 * 205.45564 * 7 2 1 10 10 O 1.21680 * 119.99689 * 11.98257 * 9 7 2 11 11 N 1.34773 * 119.99946 * 191.98219 * 9 7 2 12 12 C 1.47023 * 125.64912 * 359.69165 * 11 9 7 13 13 C 1.54336 * 107.26590 * 178.84916 * 12 11 9 14 14 C 1.55154 * 103.02071 * 338.14022 * 13 12 11 15 15 H 1.08994 * 111.03936 * 277.21661 * 14 13 12 16 16 O 1.42902 * 111.00267 * 153.37780 * 14 13 12 17 17 C 1.35930 * 117.00054 * 161.70125 * 16 14 13 18 18 C 1.38710 * 120.05789 * 5.18350 * 17 16 14 19 19 C 1.38147 * 119.95931 * 179.72085 * 18 17 16 20 20 C 1.38282 * 120.07247 * 0.55039 * 19 18 17 21 21 C 1.38241 * 120.12068 * 359.72290 * 20 19 18 22 22 C 1.38252 * 120.04258 * 0.02562 * 21 20 19 23 23 Cl 1.73599 * 120.04036 * 179.97438 * 22 21 20 24 24 C 1.47426 * 125.64935 * 180.02562 * 11 9 7 25 25 H 0.97001 * 119.99953 * 185.13080 * 1 2 3 26 26 H 1.08999 * 109.88528 * 298.39474 * 12 11 9 27 27 H 1.09003 * 109.88010 * 59.56291 * 12 11 9 28 28 H 1.09003 * 110.85439 * 219.67273 * 13 12 11 29 29 H 1.09000 * 110.66877 * 96.52328 * 13 12 11 30 30 H 1.08004 * 120.01969 * 359.96814 * 18 17 16 31 31 H 1.07999 * 119.96419 * 180.29504 * 19 18 17 32 32 H 1.08007 * 119.93573 * 179.74489 * 20 19 18 33 33 H 1.08001 * 119.97891 * 179.97438 * 21 20 19 34 34 H 1.09006 * 110.36301 * 322.93079 * 24 11 9 35 35 H 1.09002 * 110.36957 * 85.25062 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8820 2.3964 1.2125 6 1 1.8820 2.3964 -1.2125 7 6 2.0069 -1.2128 -0.0005 8 1 1.5456 -2.1026 -0.4030 9 6 3.3641 -1.2746 0.5443 10 8 3.8034 -0.3417 1.1902 11 7 4.1271 -2.3648 0.3305 12 6 3.7213 -3.5603 -0.4230 13 6 4.9235 -4.5281 -0.4287 14 6 6.1286 -3.5902 -0.1540 15 1 6.4660 -3.1078 -1.0713 16 8 7.1990 -4.3013 0.4710 17 6 8.4308 -3.7285 0.4240 18 6 8.5870 -2.4599 -0.1147 19 6 9.8390 -1.8774 -0.1562 20 6 10.9383 -2.5622 0.3283 21 6 10.7871 -3.8289 0.8608 22 6 9.5357 -4.4145 0.9094 23 17 9.3460 -6.0055 1.5774 24 6 5.5044 -2.5590 0.8192 25 1 -0.4850 -0.8367 0.0751 26 1 2.8661 -4.0313 0.0616 27 1 3.4650 -3.2845 -1.4459 28 1 5.0261 -5.0137 -1.3992 29 1 4.8239 -5.2701 0.3636 30 1 7.7298 -1.9262 -0.4979 31 1 9.9600 -0.8877 -0.5713 32 1 11.9167 -2.1063 0.2910 33 1 11.6473 -4.3619 1.2382 34 1 6.0561 -1.6197 0.7817 35 1 5.4943 -2.9537 1.8352 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275066216.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:23 Heat of formation + Delta-G solvation = -57.657586 kcal Electronic energy + Delta-G solvation = -21038.432860 eV Core-core repulsion = 17641.363603 eV Total energy + Delta-G solvation = -3397.069257 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.52052 -38.74589 -37.43059 -36.45926 -35.64054 -32.95002 -31.08497 -30.77377 -29.57225 -28.60847 -26.05220 -23.44603 -22.94365 -22.23409 -20.68583 -19.35686 -18.61508 -17.60843 -16.58385 -16.15877 -15.95306 -15.24483 -15.06519 -14.56143 -14.32628 -14.10512 -13.77734 -13.41517 -13.24909 -12.90918 -12.57328 -12.45122 -12.13052 -11.84501 -11.72253 -11.60403 -11.46173 -11.31714 -10.91878 -10.77128 -10.68425 -10.55891 -10.05514 -9.34251 -9.08308 -8.87921 -8.34550 -8.03273 -7.53507 -7.08105 -4.91305 0.94689 1.13298 2.06042 2.91931 3.43462 3.45617 3.52970 3.97780 4.15934 4.23315 4.48651 4.50278 4.57649 4.76854 4.80811 4.88686 4.97533 5.04577 5.23308 5.36858 5.46499 5.51857 5.55122 5.83974 5.88997 5.98739 6.04124 6.13764 6.20151 6.23793 6.36112 6.46302 6.96158 7.21661 7.67782 7.75915 8.13676 8.78434 9.01570 10.07585 10.22828 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.024897 B = 0.003891 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.376893 B = 7195.197004 C = 8004.987368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.075 3.925 3 Si 1.080 2.920 4 H -0.251 1.251 5 H -0.285 1.285 6 H -0.306 1.306 7 C -0.606 4.606 8 H 0.073 0.927 9 C 0.566 3.434 10 O -0.614 6.614 11 N -0.637 5.637 12 C 0.123 3.877 13 C -0.122 4.122 14 C 0.066 3.934 15 H 0.089 0.911 16 O -0.290 6.290 17 C 0.145 3.855 18 C -0.196 4.196 19 C -0.073 4.073 20 C -0.151 4.151 21 C -0.076 4.076 22 C -0.073 4.073 23 Cl -0.062 7.062 24 C 0.094 3.906 25 H 0.282 0.718 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.141 0.859 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.073 0.927 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.989 -9.488 -2.468 21.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.145 4.145 3 Si 0.907 3.093 4 H -0.176 1.176 5 H -0.211 1.211 6 H -0.235 1.235 7 C -0.641 4.641 8 H 0.091 0.909 9 C 0.376 3.624 10 O -0.504 6.504 11 N -0.376 5.376 12 C -0.001 4.001 13 C -0.160 4.160 14 C 0.009 3.991 15 H 0.107 0.893 16 O -0.202 6.202 17 C 0.099 3.901 18 C -0.215 4.215 19 C -0.091 4.091 20 C -0.170 4.170 21 C -0.095 4.095 22 C -0.100 4.100 23 Cl -0.033 7.033 24 C -0.030 4.030 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.159 0.841 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.091 0.909 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 18.806 -7.716 -2.041 20.430 hybrid contribution -0.102 -1.946 0.032 1.949 sum 18.704 -9.663 -2.009 21.148 Atomic orbital electron populations 1.70597 1.08176 1.32135 1.33798 1.26911 0.94957 1.04478 0.88133 0.83382 0.78097 0.72109 0.75737 1.17554 1.21140 1.23494 1.21883 0.97564 0.99070 1.45621 0.90861 1.18141 0.85129 0.78595 0.80488 1.90465 1.75964 1.36944 1.47049 1.48287 1.13103 1.18401 1.57773 1.21621 0.95526 0.85788 0.97163 1.22726 0.92281 0.97840 1.03124 1.23764 0.85473 0.93987 0.95830 0.89311 1.86183 1.13960 1.46794 1.73301 1.18736 0.84895 0.91487 0.95032 1.21448 0.99782 0.94863 1.05372 1.21099 0.91703 0.99658 0.96639 1.21013 0.99357 0.94717 1.01874 1.20889 0.94850 0.95377 0.98347 1.20193 0.93042 0.89318 1.07472 1.98360 1.97912 1.22919 1.84084 1.22309 0.86011 0.97912 0.96793 0.90754 0.91989 0.91835 0.89748 0.89677 0.84091 0.85045 0.85066 0.84531 0.90910 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.31 13.64 55.55 0.76 -22.55 16 2 C 0.08 2.14 5.48 -17.37 -0.10 2.04 16 3 Si 1.08 27.38 27.34 -169.99 -4.65 22.73 16 4 H -0.25 -6.59 5.78 56.52 0.33 -6.27 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.31 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.61 -16.90 9.30 -35.63 -0.33 -17.23 16 8 H 0.07 2.01 7.44 -52.48 -0.39 1.62 16 9 C 0.57 15.23 7.36 -12.99 -0.10 15.13 16 10 O -0.61 -17.97 13.00 5.21 0.07 -17.90 16 11 N -0.64 -13.87 3.33 -172.15 -0.57 -14.44 16 12 C 0.12 2.14 6.09 -3.06 -0.02 2.12 16 13 C -0.12 -1.65 6.68 -24.89 -0.17 -1.81 16 14 C 0.07 0.96 2.82 -24.57 -0.07 0.89 16 15 H 0.09 1.19 6.56 -51.93 -0.34 0.85 16 16 O -0.29 -4.19 9.41 -19.52 -0.18 -4.38 16 17 C 0.15 1.95 6.64 -39.19 -0.26 1.69 16 18 C -0.20 -2.41 8.75 -39.44 -0.34 -2.75 16 19 C -0.07 -0.74 10.04 -39.60 -0.40 -1.14 16 20 C -0.15 -1.37 10.04 -39.56 -0.40 -1.77 16 21 C -0.08 -0.75 9.83 -39.58 -0.39 -1.14 16 22 C -0.07 -0.89 6.33 -39.36 -0.25 -1.14 16 23 Cl -0.06 -0.74 28.50 -51.86 -1.48 -2.22 16 24 C 0.09 1.74 6.30 -2.52 -0.02 1.72 16 25 H 0.28 7.71 8.72 -40.82 -0.36 7.35 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.14 1.77 5.35 -52.48 -0.28 1.49 16 31 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 32 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 33 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.07 1.39 7.21 -51.93 -0.37 1.02 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 311.03 15.07 4.69 4.69 Total: -1.00 -31.97 311.03 -8.19 -40.17 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -4.00 Total: -2.71 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -2.83 Total: -3.39 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.19 Total: -36.99 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.12 Total: -22.28 kcal Atomic # 14 Polarization: 27.38 SS G_CDS: -4.65 Total: 22.73 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.48 Total: -2.22 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.97 -8.19 -40.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275066216.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.491 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds