Wall clock time and date at job start Tue Mar 31 2020 07:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86797 * 120.00018 * 2 1 4 4 H 1.48501 * 109.47288 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47312 * 59.99966 * 3 2 1 6 6 H 1.48498 * 109.47332 * 300.00025 * 3 2 1 7 7 C 1.40042 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00594 * 25.45800 * 7 2 1 9 9 C 1.46380 * 119.99943 * 205.45564 * 7 2 1 10 10 O 1.21680 * 119.99689 * 11.98257 * 9 7 2 11 11 N 1.34773 * 119.99946 * 191.98219 * 9 7 2 12 12 C 1.47023 * 125.64912 * 359.69165 * 11 9 7 13 13 C 1.54336 * 107.26590 * 178.84916 * 12 11 9 14 14 C 1.55154 * 103.02071 * 338.14022 * 13 12 11 15 15 H 1.08994 * 111.03936 * 277.21661 * 14 13 12 16 16 O 1.42902 * 111.00267 * 153.37780 * 14 13 12 17 17 C 1.35930 * 117.00054 * 161.70125 * 16 14 13 18 18 C 1.38710 * 120.05789 * 5.18350 * 17 16 14 19 19 C 1.38147 * 119.95931 * 179.72085 * 18 17 16 20 20 C 1.38282 * 120.07247 * 0.55039 * 19 18 17 21 21 C 1.38241 * 120.12068 * 359.72290 * 20 19 18 22 22 C 1.38252 * 120.04258 * 0.02562 * 21 20 19 23 23 Cl 1.73599 * 120.04036 * 179.97438 * 22 21 20 24 24 C 1.47426 * 125.64935 * 180.02562 * 11 9 7 25 25 H 0.97001 * 119.99953 * 185.13080 * 1 2 3 26 26 H 1.08999 * 109.88528 * 298.39474 * 12 11 9 27 27 H 1.09003 * 109.88010 * 59.56291 * 12 11 9 28 28 H 1.09003 * 110.85439 * 219.67273 * 13 12 11 29 29 H 1.09000 * 110.66877 * 96.52328 * 13 12 11 30 30 H 1.08004 * 120.01969 * 359.96814 * 18 17 16 31 31 H 1.07999 * 119.96419 * 180.29504 * 19 18 17 32 32 H 1.08007 * 119.93573 * 179.74489 * 20 19 18 33 33 H 1.08001 * 119.97891 * 179.97438 * 21 20 19 34 34 H 1.09006 * 110.36301 * 322.93079 * 24 11 9 35 35 H 1.09002 * 110.36957 * 85.25062 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8820 2.3964 1.2125 6 1 1.8820 2.3964 -1.2125 7 6 2.0069 -1.2128 -0.0005 8 1 1.5456 -2.1026 -0.4030 9 6 3.3641 -1.2746 0.5443 10 8 3.8034 -0.3417 1.1902 11 7 4.1271 -2.3648 0.3305 12 6 3.7213 -3.5603 -0.4230 13 6 4.9235 -4.5281 -0.4287 14 6 6.1286 -3.5902 -0.1540 15 1 6.4660 -3.1078 -1.0713 16 8 7.1990 -4.3013 0.4710 17 6 8.4308 -3.7285 0.4240 18 6 8.5870 -2.4599 -0.1147 19 6 9.8390 -1.8774 -0.1562 20 6 10.9383 -2.5622 0.3283 21 6 10.7871 -3.8289 0.8608 22 6 9.5357 -4.4145 0.9094 23 17 9.3460 -6.0055 1.5774 24 6 5.5044 -2.5590 0.8192 25 1 -0.4850 -0.8367 0.0751 26 1 2.8661 -4.0313 0.0616 27 1 3.4650 -3.2845 -1.4459 28 1 5.0261 -5.0137 -1.3992 29 1 4.8239 -5.2701 0.3636 30 1 7.7298 -1.9262 -0.4979 31 1 9.9600 -0.8877 -0.5713 32 1 11.9167 -2.1063 0.2910 33 1 11.6473 -4.3619 1.2382 34 1 6.0561 -1.6197 0.7817 35 1 5.4943 -2.9537 1.8352 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275066216.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:22 Heat of formation + Delta-G solvation = -77.345958 kcal Electronic energy + Delta-G solvation = -21039.286612 eV Core-core repulsion = 17641.363603 eV Total energy + Delta-G solvation = -3397.923009 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.57895 -40.20557 -38.77476 -37.35858 -37.23273 -35.11770 -32.26012 -31.82658 -30.64119 -30.05908 -27.98391 -24.77807 -23.98682 -23.31340 -21.85675 -21.26643 -19.63333 -19.48628 -17.79229 -17.43654 -17.04669 -16.78435 -16.38513 -16.13348 -15.61950 -15.34331 -15.00819 -14.84756 -14.70464 -14.40271 -14.08427 -13.89646 -13.62388 -13.17136 -12.90944 -12.84256 -12.72624 -12.49828 -12.34294 -12.12622 -11.86728 -11.83508 -11.68258 -11.36882 -11.03587 -10.14651 -9.92104 -9.38486 -9.28591 -9.20927 -7.09622 0.11736 0.28578 1.17277 1.41476 1.47890 1.81548 1.95321 2.08447 2.41832 2.60497 2.67727 3.21954 3.30318 3.53303 3.69742 3.82051 3.90536 4.09116 4.22078 4.24433 4.32185 4.48008 4.53267 4.68689 4.74801 4.78982 4.82318 5.05433 5.10458 5.24975 5.26362 5.43281 5.52582 5.66190 5.73787 6.04659 6.20476 6.61949 7.06365 7.99020 8.04109 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.024897 B = 0.003891 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.376893 B = 7195.197004 C = 8004.987368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.042 3.958 3 Si 1.113 2.887 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.280 1.280 7 C -0.622 4.622 8 H 0.069 0.931 9 C 0.560 3.440 10 O -0.645 6.645 11 N -0.643 5.643 12 C 0.117 3.883 13 C -0.106 4.106 14 C 0.083 3.917 15 H 0.102 0.898 16 O -0.298 6.298 17 C 0.118 3.882 18 C -0.210 4.210 19 C -0.076 4.076 20 C -0.140 4.140 21 C -0.075 4.075 22 C -0.087 4.087 23 Cl -0.067 7.067 24 C 0.093 3.907 25 H 0.280 0.720 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.120 0.880 29 H 0.091 0.909 30 H 0.132 0.868 31 H 0.153 0.847 32 H 0.166 0.834 33 H 0.162 0.838 34 H 0.060 0.940 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.348 -9.956 -3.288 23.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.175 4.175 3 Si 0.937 3.063 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.658 4.658 8 H 0.087 0.913 9 C 0.369 3.631 10 O -0.538 6.538 11 N -0.379 5.379 12 C -0.006 4.006 13 C -0.144 4.144 14 C 0.026 3.974 15 H 0.120 0.880 16 O -0.210 6.210 17 C 0.072 3.928 18 C -0.229 4.229 19 C -0.094 4.094 20 C -0.158 4.158 21 C -0.093 4.093 22 C -0.114 4.114 23 Cl -0.038 7.038 24 C -0.031 4.031 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.138 0.862 29 H 0.110 0.890 30 H 0.150 0.850 31 H 0.171 0.829 32 H 0.184 0.816 33 H 0.179 0.821 34 H 0.078 0.922 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 21.168 -8.232 -2.885 22.895 hybrid contribution -0.713 -1.853 0.327 2.013 sum 20.455 -10.086 -2.559 22.950 Atomic orbital electron populations 1.70624 1.08399 1.32143 1.34959 1.27742 0.95301 1.06620 0.87818 0.82935 0.76202 0.70426 0.76717 1.19400 1.21139 1.20712 1.22010 0.98549 0.99053 1.46149 0.91306 1.18054 0.85384 0.79568 0.80119 1.90432 1.76591 1.38583 1.48180 1.48104 1.14123 1.18375 1.57306 1.21858 0.97322 0.84890 0.96567 1.22685 0.89616 0.96677 1.05418 1.23528 0.85973 0.93098 0.94834 0.87984 1.86159 1.14364 1.46704 1.73814 1.18982 0.84691 0.92372 0.96804 1.21504 1.00610 0.94724 1.06025 1.21439 0.91162 1.00598 0.96196 1.21437 1.00479 0.94064 0.99809 1.21269 0.94663 0.95776 0.97585 1.20454 0.93663 0.89360 1.07930 1.98354 1.97990 1.23267 1.84182 1.22411 0.84372 0.98800 0.97537 0.90933 0.92460 0.91424 0.86201 0.88995 0.85010 0.82934 0.81646 0.82080 0.92164 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.63 13.64 21.83 0.30 -47.33 16 2 C 0.04 2.41 5.48 85.30 0.47 2.87 16 3 Si 1.11 55.73 27.34 68.60 1.88 57.61 16 4 H -0.27 -14.16 5.78 99.48 0.57 -13.58 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.62 -35.20 9.30 24.83 0.23 -34.97 16 8 H 0.07 3.85 7.44 -2.91 -0.02 3.83 16 9 C 0.56 30.61 7.36 86.36 0.64 31.24 16 10 O -0.64 -38.45 13.00 -4.29 -0.06 -38.51 16 11 N -0.64 -28.14 3.33 -816.79 -2.72 -30.86 16 12 C 0.12 3.96 6.09 86.73 0.53 4.49 16 13 C -0.11 -2.65 6.68 31.79 0.21 -2.44 16 14 C 0.08 2.30 2.82 31.99 0.09 2.39 16 15 H 0.10 2.59 6.56 -2.39 -0.02 2.57 16 16 O -0.30 -8.29 9.41 -92.76 -0.87 -9.16 16 17 C 0.12 3.02 6.64 22.52 0.15 3.17 16 18 C -0.21 -4.91 8.75 22.36 0.20 -4.72 16 19 C -0.08 -1.35 10.04 22.26 0.22 -1.13 16 20 C -0.14 -2.05 10.04 22.28 0.22 -1.82 16 21 C -0.07 -1.26 9.83 22.27 0.22 -1.04 16 22 C -0.09 -1.98 6.33 22.41 0.14 -1.84 16 23 Cl -0.07 -1.52 28.50 -2.72 -0.08 -1.60 16 24 C 0.09 3.44 6.30 86.86 0.55 3.99 16 25 H 0.28 15.53 8.72 -92.71 -0.81 14.72 16 26 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 28 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.13 3.25 5.35 -2.91 -0.02 3.24 16 31 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 32 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 33 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.06 2.36 7.21 -2.38 -0.02 2.34 16 35 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -69.56 311.03 3.26 -66.30 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: 0.94 Total: 3.35 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 3.86 Total: 0.19 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -2.42 Total: -78.19 kcal Atomic # 8 Polarization: -46.74 SS G_CDS: -0.93 Total: -47.67 kcal Atomic # 14 Polarization: 55.73 SS G_CDS: 1.88 Total: 57.61 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.60 kcal Total: -69.56 3.26 -66.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275066216.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.044 kcal (2) G-P(sol) polarization free energy of solvation -69.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds