Wall clock time and date at job start Tue Mar 31 2020 07:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86799 * 120.00173 * 2 1 4 4 H 1.48497 * 109.47421 * 240.00960 * 3 2 1 5 5 H 1.48500 * 109.46827 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47138 * 120.00325 * 3 2 1 7 7 C 1.40047 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99983 * 179.97438 * 7 2 1 9 9 C 1.46371 * 120.00178 * 359.97438 * 7 2 1 10 10 O 1.21682 * 120.00067 * 0.02562 * 9 7 2 11 11 N 1.34781 * 120.00234 * 180.02562 * 9 7 2 12 12 C 1.47025 * 125.64687 * 0.02562 * 11 9 7 13 13 C 1.54321 * 107.27092 * 181.04138 * 12 11 9 14 14 C 1.55159 * 102.94200 * 22.18850 * 13 12 11 15 15 H 1.08999 * 111.00365 * 82.57987 * 14 13 12 16 16 O 1.42904 * 111.00459 * 206.38626 * 14 13 12 17 17 C 1.35929 * 116.99780 * 203.70223 * 16 14 13 18 18 C 1.38703 * 120.06024 * 354.26362 * 17 16 14 19 19 C 1.38155 * 119.95397 * 179.97438 * 18 17 16 20 20 C 1.38275 * 120.08031 * 0.02562 * 19 18 17 21 21 C 1.38253 * 120.11656 * 0.02562 * 20 19 18 22 22 C 1.38262 * 120.04019 * 359.68197 * 21 20 19 23 23 Cl 1.73607 * 120.03432 * 180.31626 * 22 21 20 24 24 C 1.47422 * 125.64820 * 180.02562 * 11 9 7 25 25 H 0.96994 * 119.99928 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.88210 * 61.62264 * 12 11 9 27 27 H 1.08997 * 109.87985 * 300.45331 * 12 11 9 28 28 H 1.08996 * 110.72411 * 140.55241 * 13 12 11 29 29 H 1.09004 * 110.71668 * 263.83224 * 13 12 11 30 30 H 1.08000 * 120.02225 * 0.02562 * 18 17 16 31 31 H 1.08000 * 119.95990 * 179.97438 * 19 18 17 32 32 H 1.07997 * 119.94533 * 179.97438 * 20 19 18 33 33 H 1.08001 * 119.97420 * 179.97438 * 21 20 19 34 34 H 1.08999 * 110.36789 * 37.05190 * 24 11 9 35 35 H 1.08997 * 110.46024 * 274.77414 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0943 1.6965 -1.2126 5 1 1.2757 2.7464 0.0006 6 1 3.0945 1.6963 1.2124 7 6 2.0069 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9490 -3.6477 -0.0005 12 6 3.4122 -3.7924 0.0000 13 6 3.7231 -5.3037 -0.0270 14 6 2.4229 -5.9156 -0.6122 15 1 2.4184 -5.8557 -1.7006 16 8 2.2504 -7.2654 -0.1757 17 6 1.4805 -8.0717 -0.9533 18 6 0.8069 -7.5462 -2.0459 19 6 0.0254 -8.3678 -2.8351 20 6 -0.0865 -9.7133 -2.5366 21 6 0.5827 -10.2403 -1.4476 22 6 1.3710 -9.4237 -0.6581 23 17 2.2177 -10.0872 0.7045 24 6 1.3412 -4.9908 -0.0011 25 1 -0.4850 0.8400 0.0004 26 1 3.8286 -3.3443 0.9021 27 1 3.8325 -3.3117 -0.8833 28 1 4.5733 -5.5110 -0.6768 29 1 3.9059 -5.6778 0.9804 30 1 0.8940 -6.4955 -2.2801 31 1 -0.4994 -7.9586 -3.6856 32 1 -0.6983 -10.3536 -3.1547 33 1 0.4933 -11.2915 -1.2163 34 1 0.4420 -5.0000 -0.6171 35 1 1.1062 -5.3031 1.0164 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275067226.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:25 Heat of formation + Delta-G solvation = -48.696588 kcal Electronic energy + Delta-G solvation = -20915.747812 eV Core-core repulsion = 17519.067133 eV Total energy + Delta-G solvation = -3396.680679 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.42250 -38.56511 -37.19737 -36.40187 -35.30177 -32.56299 -31.01009 -30.59918 -29.44284 -28.46274 -26.14127 -23.45784 -22.84099 -22.15425 -20.56739 -19.29405 -18.56810 -17.01485 -16.44209 -16.00704 -15.65726 -15.30617 -14.97450 -14.44321 -14.31455 -14.03563 -13.66133 -13.28204 -13.21242 -12.82239 -12.40874 -12.06362 -11.98886 -11.55920 -11.52553 -11.37062 -11.30454 -11.18174 -10.90680 -10.86286 -10.57898 -10.46197 -10.39068 -10.23660 -9.02697 -8.90868 -8.27701 -7.74157 -7.32593 -6.26672 -4.72223 1.00194 1.19264 2.11688 3.01304 3.12015 3.17226 3.19102 3.49161 4.03524 4.46421 4.50809 4.60626 4.65463 4.83874 4.91170 4.98147 5.07250 5.10481 5.31486 5.53834 5.59163 5.66425 5.70006 5.93952 5.96423 6.06620 6.17701 6.25675 6.32454 6.33678 6.51575 6.53306 7.20252 7.32709 7.37206 8.00427 8.30838 8.94730 9.37461 10.49249 10.67992 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.028811 B = 0.003458 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.634355 B = 8096.386321 C = 8644.429571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.538 4.538 8 H 0.070 0.930 9 C 0.571 3.429 10 O -0.574 6.574 11 N -0.643 5.643 12 C 0.122 3.878 13 C -0.123 4.123 14 C 0.065 3.935 15 H 0.088 0.912 16 O -0.290 6.290 17 C 0.147 3.853 18 C -0.196 4.196 19 C -0.073 4.073 20 C -0.152 4.152 21 C -0.076 4.076 22 C -0.074 4.074 23 Cl -0.062 7.062 24 C 0.099 3.901 25 H 0.270 0.730 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.142 0.858 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.069 0.931 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.169 -17.292 -4.429 18.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.134 4.134 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.574 4.574 8 H 0.088 0.912 9 C 0.378 3.622 10 O -0.456 6.456 11 N -0.385 5.385 12 C -0.002 4.002 13 C -0.161 4.161 14 C 0.008 3.992 15 H 0.106 0.894 16 O -0.202 6.202 17 C 0.100 3.900 18 C -0.215 4.215 19 C -0.091 4.091 20 C -0.171 4.171 21 C -0.095 4.095 22 C -0.101 4.101 23 Cl -0.033 7.033 24 C -0.026 4.026 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.159 0.841 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.087 0.913 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.443 -17.176 -4.112 18.211 hybrid contribution 0.497 0.831 -0.010 0.968 sum 4.939 -16.344 -4.122 17.565 Atomic orbital electron populations 1.70003 1.07106 1.27600 1.34805 1.25739 0.94662 1.00379 0.92577 0.86390 0.79807 0.80815 0.79529 1.19197 1.20483 1.19183 1.20835 0.93619 0.88800 1.54181 0.91161 1.18083 0.86699 0.81045 0.76393 1.90620 1.13856 1.85682 1.55432 1.48669 1.04666 1.04203 1.80959 1.21602 0.84271 0.92825 1.01523 1.22751 0.95444 0.95490 1.02450 1.23819 0.97717 0.78395 0.99302 0.89387 1.86182 1.64304 1.22180 1.47559 1.18745 0.91584 0.89052 0.90633 1.21433 1.01528 1.01729 0.96806 1.21092 0.96177 0.93344 0.98496 1.21001 1.02119 0.95621 0.98336 1.20886 0.95028 0.99564 0.93997 1.20196 1.03780 0.90872 0.95242 1.98359 1.76591 1.85200 1.43164 1.22161 0.95546 0.84615 1.00258 0.91893 0.92004 0.92210 0.90029 0.89755 0.84056 0.85095 0.85119 0.84576 0.91279 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.76 11.83 55.55 0.66 -22.10 16 2 C 0.09 2.38 5.50 -17.37 -0.10 2.29 16 3 Si 0.91 19.79 29.56 -169.99 -5.02 14.77 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.54 -14.98 9.06 -35.63 -0.32 -15.30 16 8 H 0.07 1.78 7.16 -52.48 -0.38 1.40 16 9 C 0.57 16.28 7.78 -12.99 -0.10 16.18 16 10 O -0.57 -18.69 15.28 5.20 0.08 -18.61 16 11 N -0.64 -14.59 3.33 -172.20 -0.57 -15.16 16 12 C 0.12 2.16 6.05 -3.06 -0.02 2.14 16 13 C -0.12 -1.73 6.69 -24.90 -0.17 -1.90 16 14 C 0.06 0.98 2.80 -24.59 -0.07 0.91 16 15 H 0.09 1.24 6.25 -51.93 -0.32 0.92 16 16 O -0.29 -4.38 9.41 -19.52 -0.18 -4.57 16 17 C 0.15 2.05 6.67 -39.20 -0.26 1.79 16 18 C -0.20 -2.52 8.94 -39.44 -0.35 -2.87 16 19 C -0.07 -0.77 10.04 -39.60 -0.40 -1.17 16 20 C -0.15 -1.45 10.04 -39.56 -0.40 -1.84 16 21 C -0.08 -0.79 9.83 -39.57 -0.39 -1.17 16 22 C -0.07 -0.94 6.33 -39.36 -0.25 -1.19 16 23 Cl -0.06 -0.77 28.51 -51.86 -1.48 -2.25 16 24 C 0.10 1.94 6.53 -2.54 -0.02 1.92 16 25 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.14 1.85 5.64 -52.49 -0.30 1.55 16 31 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.07 1.43 7.68 -51.93 -0.40 1.03 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 315.39 15.07 4.75 4.75 Total: -1.00 -34.00 315.39 -8.52 -42.51 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -3.91 Total: 0.86 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -2.84 Total: -0.21 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.08 Total: -37.26 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.10 Total: -23.18 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.48 Total: -2.25 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.00 -8.52 -42.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275067226.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.182 kcal (2) G-P(sol) polarization free energy of solvation -33.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds