Wall clock time and date at job start Tue Mar 31 2020 07:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86799 * 120.00173 * 2 1 4 4 H 1.48497 * 109.47421 * 240.00960 * 3 2 1 5 5 H 1.48500 * 109.46827 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47138 * 120.00325 * 3 2 1 7 7 C 1.40047 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99983 * 179.97438 * 7 2 1 9 9 C 1.46371 * 120.00178 * 359.97438 * 7 2 1 10 10 O 1.21682 * 120.00067 * 0.02562 * 9 7 2 11 11 N 1.34781 * 120.00234 * 180.02562 * 9 7 2 12 12 C 1.47025 * 125.64687 * 0.02562 * 11 9 7 13 13 C 1.54321 * 107.27092 * 181.04138 * 12 11 9 14 14 C 1.55159 * 102.94200 * 22.18850 * 13 12 11 15 15 H 1.08999 * 111.00365 * 82.57987 * 14 13 12 16 16 O 1.42904 * 111.00459 * 206.38626 * 14 13 12 17 17 C 1.35929 * 116.99780 * 203.70223 * 16 14 13 18 18 C 1.38703 * 120.06024 * 354.26362 * 17 16 14 19 19 C 1.38155 * 119.95397 * 179.97438 * 18 17 16 20 20 C 1.38275 * 120.08031 * 0.02562 * 19 18 17 21 21 C 1.38253 * 120.11656 * 0.02562 * 20 19 18 22 22 C 1.38262 * 120.04019 * 359.68197 * 21 20 19 23 23 Cl 1.73607 * 120.03432 * 180.31626 * 22 21 20 24 24 C 1.47422 * 125.64820 * 180.02562 * 11 9 7 25 25 H 0.96994 * 119.99928 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.88210 * 61.62264 * 12 11 9 27 27 H 1.08997 * 109.87985 * 300.45331 * 12 11 9 28 28 H 1.08996 * 110.72411 * 140.55241 * 13 12 11 29 29 H 1.09004 * 110.71668 * 263.83224 * 13 12 11 30 30 H 1.08000 * 120.02225 * 0.02562 * 18 17 16 31 31 H 1.08000 * 119.95990 * 179.97438 * 19 18 17 32 32 H 1.07997 * 119.94533 * 179.97438 * 20 19 18 33 33 H 1.08001 * 119.97420 * 179.97438 * 21 20 19 34 34 H 1.08999 * 110.36789 * 37.05190 * 24 11 9 35 35 H 1.08997 * 110.46024 * 274.77414 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0943 1.6965 -1.2126 5 1 1.2757 2.7464 0.0006 6 1 3.0945 1.6963 1.2124 7 6 2.0069 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9490 -3.6477 -0.0005 12 6 3.4122 -3.7924 0.0000 13 6 3.7231 -5.3037 -0.0270 14 6 2.4229 -5.9156 -0.6122 15 1 2.4184 -5.8557 -1.7006 16 8 2.2504 -7.2654 -0.1757 17 6 1.4805 -8.0717 -0.9533 18 6 0.8069 -7.5462 -2.0459 19 6 0.0254 -8.3678 -2.8351 20 6 -0.0865 -9.7133 -2.5366 21 6 0.5827 -10.2403 -1.4476 22 6 1.3710 -9.4237 -0.6581 23 17 2.2177 -10.0872 0.7045 24 6 1.3412 -4.9908 -0.0011 25 1 -0.4850 0.8400 0.0004 26 1 3.8286 -3.3443 0.9021 27 1 3.8325 -3.3117 -0.8833 28 1 4.5733 -5.5110 -0.6768 29 1 3.9059 -5.6778 0.9804 30 1 0.8940 -6.4955 -2.2801 31 1 -0.4994 -7.9586 -3.6856 32 1 -0.6983 -10.3536 -3.1547 33 1 0.4933 -11.2915 -1.2163 34 1 0.4420 -5.0000 -0.6171 35 1 1.1062 -5.3031 1.0164 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275067226.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:24 Heat of formation + Delta-G solvation = -70.611421 kcal Electronic energy + Delta-G solvation = -20916.698111 eV Core-core repulsion = 17519.067133 eV Total energy + Delta-G solvation = -3397.630978 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.52377 -40.01507 -38.61709 -37.34445 -37.04503 -34.68750 -32.14620 -31.79398 -30.60843 -29.98829 -28.09303 -24.83515 -23.93405 -23.30521 -21.80197 -21.17519 -19.62399 -18.75893 -17.74215 -17.42348 -17.02426 -16.65932 -16.16950 -16.13589 -15.49583 -15.35874 -14.99024 -14.64123 -14.58461 -14.13452 -13.83773 -13.68904 -13.13433 -13.07843 -12.90528 -12.80871 -12.67758 -12.49537 -12.37398 -12.32369 -12.08098 -11.83111 -11.77342 -11.62172 -10.94680 -9.96925 -9.92109 -9.28127 -9.18135 -8.33711 -6.90268 0.11593 0.28746 1.17576 1.39557 1.42992 1.55169 1.86566 2.23702 2.40275 2.60711 2.85279 3.37683 3.49559 3.63465 3.69619 3.84822 3.91545 4.12849 4.27717 4.30968 4.32433 4.49499 4.59393 4.73154 4.76136 4.87889 4.89215 5.09718 5.16341 5.24663 5.28713 5.42950 5.52855 5.67917 5.95972 6.20630 6.31904 6.82198 7.37768 8.38135 8.61920 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.028811 B = 0.003458 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.634355 B = 8096.386321 C = 8644.429571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.028 3.972 3 Si 1.000 3.000 4 H -0.251 1.251 5 H -0.275 1.275 6 H -0.254 1.254 7 C -0.562 4.562 8 H 0.092 0.908 9 C 0.551 3.449 10 O -0.632 6.632 11 N -0.650 5.650 12 C 0.115 3.885 13 C -0.108 4.108 14 C 0.082 3.918 15 H 0.100 0.900 16 O -0.298 6.298 17 C 0.118 3.882 18 C -0.212 4.212 19 C -0.076 4.076 20 C -0.140 4.140 21 C -0.074 4.074 22 C -0.087 4.087 23 Cl -0.066 7.066 24 C 0.097 3.903 25 H 0.276 0.724 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.120 0.880 29 H 0.091 0.909 30 H 0.130 0.870 31 H 0.152 0.848 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.046 0.954 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.057 -18.236 -5.468 20.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.188 4.188 3 Si 0.819 3.181 4 H -0.175 1.175 5 H -0.199 1.199 6 H -0.178 1.178 7 C -0.598 4.598 8 H 0.110 0.890 9 C 0.358 3.642 10 O -0.519 6.519 11 N -0.389 5.389 12 C -0.008 4.008 13 C -0.145 4.145 14 C 0.025 3.975 15 H 0.118 0.882 16 O -0.211 6.211 17 C 0.072 3.928 18 C -0.230 4.230 19 C -0.094 4.094 20 C -0.158 4.158 21 C -0.092 4.092 22 C -0.114 4.114 23 Cl -0.037 7.037 24 C -0.027 4.027 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.138 0.862 29 H 0.110 0.890 30 H 0.148 0.852 31 H 0.170 0.830 32 H 0.184 0.816 33 H 0.180 0.820 34 H 0.064 0.936 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.386 -18.185 -5.153 19.950 hybrid contribution -0.171 0.965 0.286 1.021 sum 6.215 -17.219 -4.867 18.943 Atomic orbital electron populations 1.70186 1.09659 1.29201 1.36036 1.27049 0.95545 1.05077 0.91105 0.85033 0.78193 0.74400 0.80472 1.17465 1.19936 1.17754 1.21359 0.94788 0.89259 1.54378 0.89006 1.18495 0.86364 0.83091 0.76209 1.90559 1.16243 1.87158 1.57984 1.48419 1.07174 1.03966 1.79385 1.21880 0.80942 0.95889 1.02050 1.22724 0.95782 0.92214 1.03796 1.23551 0.96211 0.78109 0.99599 0.88190 1.86155 1.64935 1.21636 1.48339 1.19007 0.92773 0.89596 0.91474 1.21479 1.02567 1.01623 0.97369 1.21431 0.95464 0.93881 0.98645 1.21436 1.01126 0.95394 0.97845 1.21282 0.93845 1.00616 0.93471 1.20458 1.04525 0.90734 0.95699 1.98352 1.76792 1.85075 1.43479 1.22216 0.96529 0.84490 0.99502 0.91432 0.91798 0.91251 0.86181 0.89046 0.85231 0.82993 0.81559 0.81959 0.93592 0.93832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.49 11.83 21.84 0.26 -50.23 16 2 C 0.03 1.53 5.50 85.30 0.47 2.00 16 3 Si 1.00 40.40 29.56 68.60 2.03 42.43 16 4 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 7 C -0.56 -31.80 9.06 24.83 0.23 -31.58 16 8 H 0.09 4.61 7.16 -2.91 -0.02 4.59 16 9 C 0.55 32.81 7.78 86.36 0.67 33.48 16 10 O -0.63 -43.68 15.28 -4.29 -0.07 -43.75 16 11 N -0.65 -30.42 3.33 -816.94 -2.72 -33.14 16 12 C 0.12 3.98 6.05 86.73 0.52 4.50 16 13 C -0.11 -2.81 6.69 31.78 0.21 -2.60 16 14 C 0.08 2.49 2.80 31.98 0.09 2.58 16 15 H 0.10 2.79 6.25 -2.39 -0.01 2.77 16 16 O -0.30 -8.93 9.41 -92.75 -0.87 -9.80 16 17 C 0.12 3.25 6.67 22.52 0.15 3.40 16 18 C -0.21 -5.39 8.94 22.36 0.20 -5.19 16 19 C -0.08 -1.48 10.04 22.26 0.22 -1.26 16 20 C -0.14 -2.23 10.04 22.28 0.22 -2.00 16 21 C -0.07 -1.34 9.83 22.28 0.22 -1.12 16 22 C -0.09 -2.11 6.33 22.41 0.14 -1.97 16 23 Cl -0.07 -1.58 28.51 -2.72 -0.08 -1.65 16 24 C 0.10 3.99 6.53 86.85 0.57 4.55 16 25 H 0.28 15.33 8.29 -92.71 -0.77 14.57 16 26 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 28 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 30 H 0.13 3.52 5.64 -2.91 -0.02 3.50 16 31 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 32 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 34 H 0.05 2.05 7.68 -2.39 -0.02 2.04 16 35 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -78.63 315.39 3.58 -75.05 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 1.11 Total: 16.30 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 3.92 Total: 4.80 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -2.46 Total: -83.37 kcal Atomic # 8 Polarization: -52.61 SS G_CDS: -0.94 Total: -53.55 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.08 Total: -1.65 kcal Total: -78.63 3.58 -75.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275067226.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.435 kcal (2) G-P(sol) polarization free energy of solvation -78.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds