Wall clock time and date at job start Tue Mar 31 2020 07:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38603 * 119.54977 * 2 1 4 4 C 1.38587 * 119.34782 * 180.02562 * 3 2 1 5 5 C 1.38630 * 118.48820 * 0.25168 * 4 3 2 6 6 C 1.39264 * 119.06358 * 359.48104 * 5 4 3 7 7 C 1.48165 * 119.72712 * 180.27376 * 6 5 4 8 8 O 1.21512 * 119.99779 * 0.25327 * 7 6 5 9 9 N 1.34780 * 120.00512 * 180.25247 * 7 6 5 10 10 N 1.40094 * 120.00198 * 179.97438 * 9 7 6 11 11 C 1.34780 * 119.99773 * 179.97438 * 10 9 7 12 12 O 1.21270 * 120.00057 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.99521 * 179.97438 * 11 10 9 14 14 S 1.80999 * 109.46771 * 180.02562 * 13 11 10 15 15 C 1.76198 * 99.99982 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00123 * 0.02562 * 15 14 13 17 17 C 1.38799 * 120.00132 * 180.02562 * 15 14 13 18 18 N 1.31627 * 120.00048 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00144 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46877 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46916 * 119.99981 * 19 17 15 22 22 H 1.48500 * 109.46976 * 240.00192 * 19 17 15 23 23 N 1.31492 * 119.54668 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.46996 * 89.99888 * 1 2 3 25 25 H 1.08998 * 109.47372 * 210.00664 * 1 2 3 26 26 H 1.09003 * 109.47072 * 330.00303 * 1 2 3 27 27 H 1.08000 * 120.32295 * 359.97438 * 3 2 1 28 28 H 1.08002 * 120.75096 * 179.97438 * 4 3 2 29 29 H 1.08001 * 120.46741 * 179.75133 * 5 4 3 30 30 H 0.97001 * 119.99568 * 0.02562 * 9 7 6 31 31 H 0.97001 * 120.00233 * 0.02562 * 10 9 7 32 32 H 1.08996 * 109.47361 * 300.00317 * 13 11 10 33 33 H 1.09002 * 109.46710 * 60.00854 * 13 11 10 34 34 H 0.97002 * 120.00217 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2057 0.0000 4 6 3.5765 1.2009 -0.0005 5 6 4.2334 -0.0199 -0.0064 6 6 3.4821 -1.1925 -0.0005 7 6 4.1691 -2.5052 -0.0005 8 8 5.3832 -2.5556 -0.0010 9 7 3.4475 -3.6436 0.0000 10 7 4.0972 -4.8848 -0.0005 11 6 3.3755 -6.0231 0.0005 12 8 2.1638 -5.9729 0.0015 13 6 4.0744 -7.3583 -0.0006 14 16 2.8422 -8.6841 0.0005 15 6 3.9050 -10.0895 -0.0004 16 1 4.9767 -9.9561 -0.0009 17 6 3.3649 -11.3681 -0.0004 18 7 2.0587 -11.5308 -0.0003 19 14 4.4916 -12.8580 -0.0020 20 1 5.9069 -12.4083 -0.0025 21 1 4.2329 -13.6755 1.2104 22 1 4.2308 -13.6746 -1.2147 23 7 2.1555 -1.1439 0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6485 2.1398 -0.0004 28 1 4.1320 2.1271 -0.0010 29 1 5.3126 -0.0610 -0.0111 30 1 2.4783 -3.6034 0.0000 31 1 5.0663 -4.9250 -0.0009 32 1 4.6967 -7.4418 -0.8915 33 1 4.6994 -7.4419 0.8885 34 1 1.6812 -12.4243 0.0000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279755835.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:34 Heat of formation + Delta-G solvation = -30.631176 kcal Electronic energy + Delta-G solvation = -19703.312197 eV Core-core repulsion = 16341.751350 eV Total energy + Delta-G solvation = -3361.560847 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.95194 -40.99477 -39.83365 -36.61385 -34.58867 -34.06117 -33.97115 -32.72080 -30.16366 -28.69194 -27.66890 -25.77808 -23.28946 -22.77670 -22.17457 -20.05260 -19.14922 -19.12434 -17.63491 -17.33068 -17.04066 -16.88071 -16.72971 -16.26753 -16.19361 -15.91243 -15.20968 -15.04233 -14.82886 -14.54864 -14.05380 -13.90036 -13.31227 -13.17000 -13.12192 -12.91941 -12.91743 -12.63850 -12.56410 -11.87391 -11.71472 -11.34432 -11.15957 -10.97981 -10.64281 -10.31166 -10.10213 -9.59761 -8.67948 -8.35428 -6.13504 -0.48643 0.19432 0.46549 1.20274 1.33935 1.42394 1.51685 1.59372 1.63265 2.25597 2.60828 2.73525 2.97734 2.99434 3.29421 3.56391 3.79851 3.89128 3.95531 4.06435 4.22833 4.40800 4.46092 4.57438 4.76220 4.81870 5.04172 5.10265 5.21148 5.33985 5.43398 5.50888 5.62193 6.20377 6.23884 6.56702 6.77148 7.06576 7.13021 8.73963 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.038542 B = 0.002570 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.297908 B =10893.240175 C =11599.089856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.113 3.887 3 C -0.131 4.131 4 C -0.070 4.070 5 C -0.116 4.116 6 C 0.061 3.939 7 C 0.572 3.428 8 O -0.557 6.557 9 N -0.502 5.502 10 N -0.515 5.515 11 C 0.540 3.460 12 O -0.551 6.551 13 C -0.122 4.122 14 S -0.136 6.136 15 C -0.546 4.546 16 H 0.086 0.914 17 C 0.014 3.986 18 N -0.911 5.911 19 Si 0.999 3.001 20 H -0.257 1.257 21 H -0.274 1.274 22 H -0.274 1.274 23 N -0.489 5.489 24 H 0.089 0.911 25 H 0.066 0.934 26 H 0.107 0.893 27 H 0.182 0.818 28 H 0.184 0.816 29 H 0.153 0.847 30 H 0.440 0.560 31 H 0.441 0.559 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.075 29.041 -0.024 29.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.028 4.028 3 C -0.150 4.150 4 C -0.095 4.095 5 C -0.138 4.138 6 C -0.077 4.077 7 C 0.358 3.642 8 O -0.435 6.435 9 N -0.249 5.249 10 N -0.266 5.266 11 C 0.327 3.673 12 O -0.427 6.427 13 C -0.274 4.274 14 S 0.091 5.909 15 C -0.694 4.694 16 H 0.104 0.896 17 C -0.191 4.191 18 N -0.547 5.547 19 Si 0.821 3.179 20 H -0.180 1.180 21 H -0.200 1.200 22 H -0.200 1.200 23 N -0.203 5.203 24 H 0.107 0.893 25 H 0.085 0.915 26 H 0.125 0.875 27 H 0.199 0.801 28 H 0.201 0.799 29 H 0.171 0.829 30 H 0.284 0.716 31 H 0.285 0.715 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.348 28.150 -0.022 28.183 hybrid contribution 2.132 -0.638 -0.013 2.225 sum 3.480 27.512 -0.035 27.731 Atomic orbital electron populations 1.20868 0.86574 1.04667 1.04219 1.21907 0.98505 0.87918 0.94471 1.22705 0.95212 1.00110 0.97015 1.22099 0.94765 0.98493 0.94186 1.22254 1.02584 0.91774 0.97164 1.20489 0.90355 0.92183 1.04643 1.18394 0.86481 0.82694 0.76595 1.90775 1.13372 1.87005 1.52319 1.44844 1.10318 0.95907 1.73824 1.44861 1.09666 0.95259 1.76805 1.20423 0.87420 0.84200 0.75293 1.90725 1.15056 1.86928 1.49964 1.23281 1.03476 0.92612 1.08011 1.85597 1.11169 0.97060 1.97096 1.23253 0.95011 0.92310 1.58822 0.89606 1.26115 0.97154 1.02105 0.93736 1.70176 1.12444 1.24103 1.48012 0.84898 0.78318 0.76654 0.78028 1.18041 1.19988 1.19982 1.67315 1.08379 1.32482 1.12089 0.89297 0.91533 0.87473 0.80055 0.79899 0.82921 0.71582 0.71475 0.86106 0.86104 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.17 71.24 0.72 -0.36 16 2 C 0.11 1.72 6.78 42.70 0.29 2.01 16 3 C -0.13 -1.14 9.75 22.44 0.22 -0.92 16 4 C -0.07 -0.64 10.17 22.45 0.23 -0.42 16 5 C -0.12 -1.93 9.63 22.61 0.22 -1.71 16 6 C 0.06 1.41 6.75 41.89 0.28 1.70 16 7 C 0.57 16.02 7.93 86.88 0.69 16.71 16 8 O -0.56 -17.21 16.16 -3.75 -0.06 -17.27 16 9 N -0.50 -15.08 6.25 -175.38 -1.10 -16.17 16 10 N -0.52 -15.82 6.26 -173.54 -1.09 -16.91 16 11 C 0.54 20.42 7.96 87.66 0.70 21.12 16 12 O -0.55 -25.19 15.70 -3.00 -0.05 -25.24 16 13 C -0.12 -4.74 6.16 71.24 0.44 -4.30 16 14 S -0.14 -7.41 20.57 -56.49 -1.16 -8.57 16 15 C -0.55 -30.72 9.50 67.95 0.65 -30.07 16 16 H 0.09 4.47 7.80 -2.91 -0.02 4.45 16 17 C 0.01 0.78 5.49 84.86 0.47 1.24 16 18 N -0.91 -55.44 13.22 21.65 0.29 -55.16 16 19 Si 1.00 43.39 29.55 68.60 2.03 45.42 16 20 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 N -0.49 -10.93 9.45 -173.08 -1.64 -12.56 16 24 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.11 0.44 8.08 -2.39 -0.02 0.42 16 27 H 0.18 0.12 8.06 -2.91 -0.02 0.10 16 28 H 0.18 0.25 8.06 -2.91 -0.02 0.23 16 29 H 0.15 2.35 7.64 -2.91 -0.02 2.33 16 30 H 0.44 13.67 7.33 -213.32 -1.56 12.11 16 31 H 0.44 11.55 8.00 -213.32 -1.71 9.84 16 32 H 0.12 4.17 8.14 -2.40 -0.02 4.15 16 33 H 0.12 4.17 8.14 -2.39 -0.02 4.15 16 34 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -79.00 324.62 0.01 -78.99 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: -2.11 Total: 22.49 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 4.90 Total: 4.99 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -3.53 Total: -100.80 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -0.11 Total: -42.51 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -7.41 SS G_CDS: -1.16 Total: -8.57 kcal Total: -79.00 0.01 -78.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279755835.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.354 kcal (2) G-P(sol) polarization free energy of solvation -79.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds