Wall clock time and date at job start Tue Mar 31 2020 06:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99638 * 2 1 4 4 H 1.48500 * 109.46937 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47570 * 300.00059 * 3 2 1 6 6 H 1.48503 * 109.47036 * 59.99985 * 3 2 1 7 7 C 1.37874 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99728 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99913 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47111 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47111 * 179.97438 * 10 9 7 12 12 O 1.21288 * 120.00087 * 5.43023 * 11 10 9 13 13 N 1.34781 * 119.99980 * 185.43336 * 11 10 9 14 14 C 1.47301 * 121.15545 * 354.18584 * 13 11 10 15 15 C 1.53542 * 107.57689 * 221.97428 * 14 13 11 16 16 O 1.42954 * 108.80333 * 301.81417 * 15 14 13 17 17 C 1.35921 * 117.76963 * 49.46833 * 16 15 14 18 18 C 1.38809 * 119.65948 * 159.87116 * 17 16 15 19 19 Cl 1.73605 * 119.98340 * 359.79467 * 18 17 16 20 20 C 1.38291 * 120.03043 * 179.81580 * 18 17 16 21 21 C 1.38285 * 120.27995 * 359.95233 * 20 18 17 22 22 C 1.38242 * 120.06966 * 0.32068 * 21 20 18 23 23 C 1.38606 * 119.90004 * 359.48891 * 22 21 20 24 24 H 0.96994 * 120.00129 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47435 * 59.99928 * 9 7 2 26 26 H 1.08997 * 109.47028 * 299.99797 * 9 7 2 27 27 H 1.09003 * 109.47150 * 59.99606 * 10 9 7 28 28 H 1.08997 * 109.46889 * 299.99735 * 10 9 7 29 29 H 1.08998 * 109.84203 * 102.45454 * 14 13 11 30 30 H 1.09004 * 109.83586 * 341.48733 * 14 13 11 31 31 H 1.08998 * 109.58184 * 182.01670 * 15 14 13 32 32 H 1.09002 * 109.69127 * 61.68026 * 15 14 13 33 33 H 1.08001 * 119.85719 * 179.97438 * 20 18 17 34 34 H 1.07995 * 119.96265 * 180.02562 * 21 20 18 35 35 H 1.07998 * 120.04550 * 179.72557 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4919 -4.9671 -0.0020 12 8 0.2832 -4.9695 -0.1019 13 7 2.1613 -6.1318 0.1086 14 6 3.6338 -6.1678 0.1040 15 6 4.0658 -7.3575 -0.7652 16 8 3.4971 -8.5529 -0.2256 17 6 2.1675 -8.5504 0.0565 18 6 1.4879 -9.7550 0.1743 19 17 2.3357 -11.2542 -0.0438 20 6 0.1359 -9.7614 0.4649 21 6 -0.5452 -8.5708 0.6404 22 6 0.1225 -7.3664 0.5193 23 6 1.4785 -7.3540 0.2321 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5563 -0.8920 26 1 0.6242 -2.5574 0.8880 27 1 2.8714 -3.6046 0.8890 28 1 2.8727 -3.6039 -0.8909 29 1 4.0039 -6.2991 1.1208 30 1 4.0252 -5.2413 -0.3162 31 1 5.1529 -7.4364 -0.7623 32 1 3.7128 -7.2136 -1.7864 33 1 -0.3901 -10.7003 0.5555 34 1 -1.6009 -8.5818 0.8676 35 1 -0.4108 -6.4368 0.6520 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291423860.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:53 Heat of formation + Delta-G solvation = -45.594707 kcal Electronic energy + Delta-G solvation = -21107.398004 eV Core-core repulsion = 17710.851833 eV Total energy + Delta-G solvation = -3396.546171 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.38796 -39.07728 -37.80161 -36.45636 -35.31777 -33.68347 -31.57096 -30.97144 -30.11357 -28.45874 -25.91141 -24.51489 -23.43487 -21.92933 -20.99444 -19.11902 -18.35610 -17.47538 -17.12675 -16.36220 -15.98585 -15.45125 -15.40360 -14.95684 -14.50998 -14.29082 -14.21327 -13.68574 -13.54041 -13.21197 -12.54673 -12.29063 -12.22013 -11.93615 -11.77170 -11.49934 -11.24109 -11.14488 -11.02840 -10.95725 -10.66528 -10.14020 -10.10142 -9.75231 -9.27134 -9.12565 -8.43699 -8.41926 -7.90346 -6.05995 -4.11191 1.08653 1.14369 2.01211 2.67648 2.80638 3.03562 3.26551 3.34200 3.36699 3.63462 4.28578 4.37241 4.51656 4.72854 4.77795 4.96107 5.01728 5.09470 5.26169 5.29525 5.35904 5.42741 5.52448 5.87543 5.91748 5.96851 6.08852 6.28997 6.44208 6.64323 6.73924 7.12704 7.28714 7.61711 7.69550 7.93638 8.20442 8.35477 8.96240 9.53259 11.04883 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.034720 B = 0.003365 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.269312 B = 8320.145915 C = 9059.308716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.126 4.126 11 C 0.516 3.484 12 O -0.503 6.503 13 N -0.567 5.567 14 C 0.065 3.935 15 C 0.047 3.953 16 O -0.302 6.302 17 C 0.093 3.907 18 C -0.045 4.045 19 Cl -0.062 7.062 20 C -0.109 4.109 21 C -0.115 4.115 22 C -0.114 4.114 23 C 0.103 3.897 24 H 0.261 0.739 25 H 0.027 0.973 26 H 0.024 0.976 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.072 0.928 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.555 -19.447 0.249 20.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.568 4.568 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.166 4.166 11 C 0.309 3.691 12 O -0.377 6.377 13 N -0.294 5.294 14 C -0.058 4.058 15 C -0.029 4.029 16 O -0.216 6.216 17 C 0.044 3.956 18 C -0.073 4.073 19 Cl -0.033 7.033 20 C -0.129 4.129 21 C -0.134 4.134 22 C -0.133 4.133 23 C 0.008 3.992 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.133 0.867 31 H 0.143 0.857 32 H 0.091 0.909 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 5.991 -19.477 0.179 20.379 hybrid contribution 0.614 0.973 -0.074 1.152 sum 6.605 -18.505 0.105 19.648 Atomic orbital electron populations 1.69996 1.06074 1.26668 1.49890 1.25022 0.94844 0.99319 0.95122 0.86518 0.79973 0.83695 0.77672 1.19716 1.20949 1.20954 1.21191 0.92959 0.90798 1.51816 0.92469 1.18948 0.93105 0.89234 0.98841 1.21974 1.00980 0.90837 1.02814 1.21923 0.88501 0.84777 0.73910 1.90522 1.14592 1.86241 1.46334 1.46195 1.06949 1.04856 1.71365 1.22713 0.79440 1.01346 1.02295 1.23357 0.99845 0.82918 0.96799 1.86096 1.18980 1.37513 1.78989 1.18107 0.84084 0.91161 1.02225 1.20015 0.92322 0.85033 1.09897 1.98347 1.78018 1.31127 1.95825 1.20849 0.91167 0.99532 1.01308 1.21048 1.00429 0.90942 1.00969 1.22025 0.92439 1.01326 0.97558 1.17955 0.93187 0.84468 1.03571 0.92875 0.95477 0.95757 0.89734 0.89598 0.89285 0.86675 0.85721 0.90949 0.84571 0.84560 0.81033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.53 -14.32 9.11 -34.44 -0.31 -14.64 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.04 0.92 4.28 -27.88 -0.12 0.80 16 10 C -0.13 -2.36 4.12 -27.88 -0.11 -2.48 16 11 C 0.52 9.47 7.59 -10.98 -0.08 9.38 16 12 O -0.50 -10.88 12.84 5.55 0.07 -10.80 16 13 N -0.57 -8.51 3.01 -112.34 -0.34 -8.85 16 14 C 0.06 0.68 6.40 -3.32 -0.02 0.66 16 15 C 0.05 0.44 7.18 37.44 0.27 0.71 16 16 O -0.30 -3.80 9.76 -19.49 -0.19 -3.99 16 17 C 0.09 1.29 6.51 -39.03 -0.25 1.04 16 18 C -0.04 -0.58 6.33 -39.35 -0.25 -0.83 16 19 Cl -0.06 -0.72 28.47 -51.86 -1.48 -2.20 16 20 C -0.11 -1.25 9.81 -39.54 -0.39 -1.64 16 21 C -0.11 -1.41 10.05 -39.56 -0.40 -1.81 16 22 C -0.11 -1.74 8.94 -39.44 -0.35 -2.09 16 23 C 0.10 1.58 6.33 -83.38 -0.53 1.05 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.03 0.75 8.04 -51.93 -0.42 0.34 16 26 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 28 H 0.09 1.43 7.62 -51.93 -0.40 1.03 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.12 1.02 6.43 -51.93 -0.33 0.69 16 31 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.17 3.01 5.15 -52.59 -0.27 2.74 16 LS Contribution 310.40 15.07 4.68 4.68 Total: -1.00 -32.53 310.40 -8.11 -40.64 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -3.92 Total: -1.39 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -2.65 Total: -8.28 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.40 Total: -34.61 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.12 Total: -14.79 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.48 Total: -2.20 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.53 -8.11 -40.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291423860.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.956 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds