Wall clock time and date at job start Tue Mar 31 2020 06:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99638 * 2 1 4 4 H 1.48500 * 109.46937 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47570 * 300.00059 * 3 2 1 6 6 H 1.48503 * 109.47036 * 59.99985 * 3 2 1 7 7 C 1.37874 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99728 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99913 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47111 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47111 * 179.97438 * 10 9 7 12 12 O 1.21288 * 120.00087 * 5.43023 * 11 10 9 13 13 N 1.34781 * 119.99980 * 185.43336 * 11 10 9 14 14 C 1.47301 * 121.15545 * 354.18584 * 13 11 10 15 15 C 1.53542 * 107.57689 * 221.97428 * 14 13 11 16 16 O 1.42954 * 108.80333 * 301.81417 * 15 14 13 17 17 C 1.35921 * 117.76963 * 49.46833 * 16 15 14 18 18 C 1.38809 * 119.65948 * 159.87116 * 17 16 15 19 19 Cl 1.73605 * 119.98340 * 359.79467 * 18 17 16 20 20 C 1.38291 * 120.03043 * 179.81580 * 18 17 16 21 21 C 1.38285 * 120.27995 * 359.95233 * 20 18 17 22 22 C 1.38242 * 120.06966 * 0.32068 * 21 20 18 23 23 C 1.38606 * 119.90004 * 359.48891 * 22 21 20 24 24 H 0.96994 * 120.00129 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47435 * 59.99928 * 9 7 2 26 26 H 1.08997 * 109.47028 * 299.99797 * 9 7 2 27 27 H 1.09003 * 109.47150 * 59.99606 * 10 9 7 28 28 H 1.08997 * 109.46889 * 299.99735 * 10 9 7 29 29 H 1.08998 * 109.84203 * 102.45454 * 14 13 11 30 30 H 1.09004 * 109.83586 * 341.48733 * 14 13 11 31 31 H 1.08998 * 109.58184 * 182.01670 * 15 14 13 32 32 H 1.09002 * 109.69127 * 61.68026 * 15 14 13 33 33 H 1.08001 * 119.85719 * 179.97438 * 20 18 17 34 34 H 1.07995 * 119.96265 * 180.02562 * 21 20 18 35 35 H 1.07998 * 120.04550 * 179.72557 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4919 -4.9671 -0.0020 12 8 0.2832 -4.9695 -0.1019 13 7 2.1613 -6.1318 0.1086 14 6 3.6338 -6.1678 0.1040 15 6 4.0658 -7.3575 -0.7652 16 8 3.4971 -8.5529 -0.2256 17 6 2.1675 -8.5504 0.0565 18 6 1.4879 -9.7550 0.1743 19 17 2.3357 -11.2542 -0.0438 20 6 0.1359 -9.7614 0.4649 21 6 -0.5452 -8.5708 0.6404 22 6 0.1225 -7.3664 0.5193 23 6 1.4785 -7.3540 0.2321 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5563 -0.8920 26 1 0.6242 -2.5574 0.8880 27 1 2.8714 -3.6046 0.8890 28 1 2.8727 -3.6039 -0.8909 29 1 4.0039 -6.2991 1.1208 30 1 4.0252 -5.2413 -0.3162 31 1 5.1529 -7.4364 -0.7623 32 1 3.7128 -7.2136 -1.7864 33 1 -0.3901 -10.7003 0.5555 34 1 -1.6009 -8.5818 0.8676 35 1 -0.4108 -6.4368 0.6520 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291423860.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:53 Heat of formation + Delta-G solvation = -65.565011 kcal Electronic energy + Delta-G solvation = -21108.263981 eV Core-core repulsion = 17710.851833 eV Total energy + Delta-G solvation = -3397.412149 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.47914 -40.34880 -38.75825 -37.45021 -36.48754 -35.65249 -33.25144 -32.01882 -31.25337 -29.61612 -27.67719 -25.47950 -24.77369 -23.38965 -22.22457 -20.38994 -19.36391 -18.95721 -18.23460 -17.93301 -17.22870 -16.76646 -16.49202 -16.32374 -16.06712 -15.42803 -15.14009 -14.93705 -14.83076 -14.26871 -14.21408 -13.94274 -13.32740 -13.13689 -12.94140 -12.87456 -12.73658 -12.45855 -12.39740 -12.07904 -11.97225 -11.87679 -11.63086 -11.28619 -11.17320 -10.59031 -10.56504 -9.45647 -8.98864 -8.19150 -6.32858 0.01407 0.11342 1.01562 1.43224 1.43878 1.46719 1.56458 1.59319 2.13917 2.42213 2.58338 3.14884 3.39849 3.45152 3.78971 3.89716 3.99937 4.08927 4.23017 4.24332 4.39846 4.43484 4.49143 4.58550 4.69437 4.86802 4.96165 5.03230 5.30043 5.38900 5.48515 5.58188 5.68297 5.82552 6.03579 6.14768 6.16165 6.84158 6.95951 7.37726 8.93596 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.034720 B = 0.003365 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.269312 B = 8320.145915 C = 9059.308716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.972 3.028 4 H -0.251 1.251 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.540 4.540 8 H 0.079 0.921 9 C 0.042 3.958 10 C -0.112 4.112 11 C 0.515 3.485 12 O -0.551 6.551 13 N -0.562 5.562 14 C 0.055 3.945 15 C 0.045 3.955 16 O -0.308 6.308 17 C 0.093 3.907 18 C -0.055 4.055 19 Cl -0.049 7.049 20 C -0.096 4.096 21 C -0.112 4.112 22 C -0.137 4.137 23 C 0.078 3.922 24 H 0.262 0.738 25 H -0.014 1.014 26 H -0.016 1.016 27 H 0.110 0.890 28 H 0.114 0.886 29 H 0.103 0.897 30 H 0.135 0.865 31 H 0.167 0.833 32 H 0.070 0.930 33 H 0.168 0.832 34 H 0.159 0.841 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.372 -20.621 0.208 22.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.796 3.204 4 H -0.174 1.174 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.578 4.578 8 H 0.097 0.903 9 C 0.004 3.996 10 C -0.151 4.151 11 C 0.307 3.693 12 O -0.429 6.429 13 N -0.288 5.288 14 C -0.065 4.065 15 C -0.030 4.030 16 O -0.222 6.222 17 C 0.044 3.956 18 C -0.083 4.083 19 Cl -0.020 7.020 20 C -0.115 4.115 21 C -0.131 4.131 22 C -0.158 4.158 23 C -0.017 4.017 24 H 0.071 0.929 25 H 0.004 0.996 26 H 0.002 0.998 27 H 0.128 0.872 28 H 0.132 0.868 29 H 0.121 0.879 30 H 0.153 0.847 31 H 0.185 0.815 32 H 0.088 0.912 33 H 0.185 0.815 34 H 0.177 0.823 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.872 -20.697 0.140 22.519 hybrid contribution -0.265 1.204 -0.060 1.234 sum 8.607 -19.493 0.080 21.309 Atomic orbital electron populations 1.70173 1.08286 1.27747 1.51484 1.26107 0.95685 1.03887 0.94687 0.85298 0.79452 0.78230 0.77417 1.17396 1.20830 1.20851 1.21707 0.94103 0.91331 1.50669 0.90282 1.18715 0.93664 0.92208 0.94999 1.21714 0.99479 0.88617 1.05324 1.21755 0.87880 0.85787 0.73859 1.90527 1.16514 1.87067 1.48759 1.46084 1.08740 1.03846 1.70083 1.23125 0.76601 1.03049 1.03767 1.23680 1.01924 0.81275 0.96080 1.86091 1.18060 1.39061 1.78985 1.18184 0.84710 0.90857 1.01821 1.20264 0.92969 0.85374 1.09686 1.98351 1.77851 1.30030 1.95736 1.21191 0.90791 1.00324 0.99204 1.21284 1.01513 0.90187 1.00139 1.21929 0.93069 1.01418 0.99348 1.18091 0.93424 0.84964 1.05195 0.92886 0.99567 0.99777 0.87178 0.86821 0.87865 0.84658 0.81529 0.91159 0.81456 0.82304 0.83958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.97 13.29 21.45 0.28 -57.69 16 2 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 3 Si 0.97 42.93 29.54 68.60 2.03 44.96 16 4 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.54 -29.34 9.11 25.60 0.23 -29.10 16 8 H 0.08 3.86 7.74 -2.91 -0.02 3.83 16 9 C 0.04 2.21 4.28 29.85 0.13 2.34 16 10 C -0.11 -4.16 4.12 29.85 0.12 -4.04 16 11 C 0.51 19.43 7.59 87.66 0.67 20.09 16 12 O -0.55 -25.61 12.84 -3.05 -0.04 -25.65 16 13 N -0.56 -16.69 3.01 -627.73 -1.89 -18.58 16 14 C 0.06 1.03 6.40 86.41 0.55 1.59 16 15 C 0.05 0.72 7.18 72.16 0.52 1.24 16 16 O -0.31 -7.03 9.76 -92.66 -0.90 -7.94 16 17 C 0.09 2.48 6.51 22.63 0.15 2.62 16 18 C -0.06 -1.32 6.33 22.42 0.14 -1.18 16 19 Cl -0.05 -1.02 28.47 -2.72 -0.08 -1.10 16 20 C -0.10 -2.02 9.81 22.29 0.22 -1.80 16 21 C -0.11 -2.71 10.05 22.28 0.22 -2.49 16 22 C -0.14 -4.38 8.94 22.36 0.20 -4.18 16 23 C 0.08 2.39 6.33 38.05 0.24 2.63 16 24 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 25 H -0.01 -0.85 8.04 -2.39 -0.02 -0.87 16 26 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 27 H 0.11 3.51 8.09 -2.39 -0.02 3.49 16 28 H 0.11 3.57 7.62 -2.39 -0.02 3.55 16 29 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.14 1.95 6.43 -2.39 -0.02 1.93 16 31 H 0.17 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 34 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 35 H 0.14 5.45 5.15 -4.60 -0.02 5.43 16 Total: -1.00 -74.96 310.40 4.36 -70.59 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 1.11 Total: 7.55 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 3.86 Total: -12.15 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -1.61 Total: -76.27 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -0.94 Total: -33.59 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -74.96 4.36 -70.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291423860.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.030 kcal (2) G-P(sol) polarization free energy of solvation -74.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds