Wall clock time and date at job start Tue Mar 31 2020 06:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 119.99958 * 2 1 4 4 H 1.48502 * 109.46717 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47082 * 300.00198 * 3 2 1 6 6 H 1.48494 * 109.47160 * 60.00488 * 3 2 1 7 7 C 1.38951 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00085 * 175.97925 * 7 2 1 9 9 N 1.37101 * 119.99865 * 355.98497 * 7 2 1 10 10 C 1.34777 * 120.00120 * 146.35142 * 9 7 2 11 11 O 1.21296 * 119.99627 * 355.86020 * 10 9 7 12 12 C 1.50699 * 120.00136 * 175.85673 * 10 9 7 13 13 H 1.09006 * 109.46957 * 310.57028 * 12 10 9 14 14 O 1.42897 * 109.46956 * 190.57466 * 12 10 9 15 15 C 1.50697 * 109.47229 * 70.57193 * 12 10 9 16 16 C 1.38241 * 119.98550 * 74.81207 * 15 12 10 17 17 C 1.38217 * 120.00789 * 179.72934 * 16 15 12 18 18 C 1.38354 * 119.98862 * 0.54244 * 17 16 15 19 19 Cl 1.73600 * 120.01018 * 179.70756 * 18 17 16 20 20 C 1.38351 * 119.97027 * 359.73115 * 18 17 16 21 21 C 1.38216 * 119.99039 * 359.97438 * 20 18 17 22 22 C 1.46501 * 120.00002 * 326.62806 * 9 7 2 23 23 C 1.52999 * 117.49674 * 315.12593 * 22 9 7 24 24 C 1.52997 * 117.49723 * 246.50522 * 22 9 7 25 25 H 0.96992 * 119.99787 * 5.01047 * 1 2 3 26 26 H 0.96697 * 114.00148 * 299.99403 * 14 12 10 27 27 H 1.08001 * 119.99001 * 359.97438 * 16 15 12 28 28 H 1.07998 * 120.00450 * 180.27505 * 17 16 15 29 29 H 1.08004 * 120.00235 * 179.97438 * 20 18 17 30 30 H 1.07998 * 119.99327 * 180.02562 * 21 20 18 31 31 H 1.08999 * 115.54943 * 100.83380 * 22 9 7 32 32 H 1.09008 * 117.50130 * 0.02562 * 23 22 9 33 33 H 1.08998 * 117.50087 * 145.01900 * 23 22 9 34 34 H 1.08999 * 117.50091 * 214.97332 * 24 22 9 35 35 H 1.09006 * 117.50195 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0869 -1.2045 -0.0661 9 7 1.3259 -2.3892 0.0821 10 6 1.7914 -3.4809 -0.5567 11 8 2.7723 -3.3968 -1.2652 12 6 1.0933 -4.8061 -0.3906 13 1 0.9358 -5.0034 0.6698 14 8 1.8995 -5.8430 -0.9534 15 6 -0.2373 -4.7649 -1.0970 16 6 -0.2896 -4.8359 -2.4766 17 6 -1.5100 -4.8038 -3.1246 18 6 -2.6787 -4.6894 -2.3930 19 17 -4.2113 -4.6414 -3.2068 20 6 -2.6252 -4.6127 -1.0126 21 6 -1.4046 -4.6510 -0.3653 22 6 0.0869 -2.4683 0.8597 23 6 0.0771 -1.8118 2.2417 24 6 0.0976 -3.3368 2.1193 25 1 -0.4849 0.8368 -0.0734 26 1 2.0806 -5.7323 -1.8968 27 1 0.6231 -4.9203 -3.0478 28 1 -1.5510 -4.8637 -4.2022 29 1 -3.5372 -4.5230 -0.4410 30 1 -1.3629 -4.5916 0.7122 31 1 -0.8353 -2.4345 0.2795 32 1 0.9925 -1.3207 2.5721 33 1 -0.8515 -1.3458 2.5709 34 1 -0.8176 -3.8739 2.3681 35 1 1.0264 -3.8497 2.3691 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291530601.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:20 Heat of formation + Delta-G solvation = -27.967387 kcal Electronic energy + Delta-G solvation = -22150.151529 eV Core-core repulsion = 18754.369735 eV Total energy + Delta-G solvation = -3395.781793 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.03139 -38.37399 -36.81113 -36.33463 -35.36326 -33.08789 -31.56410 -30.96486 -30.71983 -26.91364 -24.61670 -22.86484 -22.13533 -21.34963 -21.22795 -19.39003 -17.55976 -16.99150 -16.61905 -15.88080 -15.64218 -15.20390 -14.79209 -14.18765 -14.15069 -13.64948 -13.44042 -13.35308 -13.16697 -12.76126 -12.41141 -12.05957 -11.61076 -11.49403 -11.36639 -11.17720 -10.97558 -10.83549 -10.63311 -10.62419 -10.35815 -10.29635 -9.84185 -9.48144 -8.98295 -8.79148 -8.76979 -8.07921 -7.69655 -6.36550 -4.02257 1.25769 1.45792 2.21471 3.11175 3.22441 3.27913 3.62243 3.81500 4.04078 4.56160 4.57256 4.87913 4.90913 4.92618 5.01151 5.13770 5.44466 5.46402 5.49552 5.68755 5.79326 5.83024 5.90954 6.05110 6.14117 6.14340 6.33392 6.34842 6.66259 6.69572 6.83345 6.91603 7.08261 7.50617 7.84167 8.11525 8.39619 9.08716 9.29070 9.84157 10.69150 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.005891 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.213680 B = 4751.807697 C = 5327.746129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.046 3.954 3 Si 0.919 3.081 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.313 4.313 8 H 0.093 0.907 9 N -0.409 5.409 10 C 0.434 3.566 11 O -0.575 6.575 12 C 0.132 3.868 13 H 0.123 0.877 14 O -0.540 6.540 15 C -0.090 4.090 16 C -0.092 4.092 17 C -0.109 4.109 18 C -0.034 4.034 19 Cl -0.082 7.082 20 C -0.110 4.110 21 C -0.091 4.091 22 C 0.125 3.875 23 C -0.135 4.135 24 C -0.238 4.238 25 H 0.268 0.732 26 H 0.377 0.623 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.139 0.861 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.555 -7.946 -0.130 10.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.160 4.160 3 Si 0.746 3.254 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.441 4.441 8 H 0.111 0.889 9 N -0.129 5.129 10 C 0.222 3.778 11 O -0.459 6.459 12 C 0.069 3.931 13 H 0.140 0.860 14 O -0.345 6.345 15 C -0.091 4.091 16 C -0.111 4.111 17 C -0.128 4.128 18 C -0.061 4.061 19 Cl -0.053 7.053 20 C -0.129 4.129 21 C -0.109 4.109 22 C 0.020 3.980 23 C -0.173 4.173 24 C -0.276 4.276 25 H 0.078 0.922 26 H 0.226 0.774 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.150 0.850 30 H 0.157 0.843 31 H 0.129 0.871 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.369 -7.956 0.123 10.845 hybrid contribution 0.028 1.367 -0.611 1.498 sum -7.341 -6.589 -0.488 9.876 Atomic orbital electron populations 1.69844 1.05796 1.27654 1.47074 1.25364 0.95502 0.99452 0.95666 0.85966 0.79994 0.81613 0.77814 1.19248 1.20634 1.20646 1.19520 0.92049 0.81712 1.50807 0.88917 1.43044 1.20717 1.08483 1.40612 1.20608 0.87694 0.86087 0.83457 1.90543 1.28853 1.85073 1.41423 1.20804 0.85924 0.88000 0.98329 0.85974 1.86524 1.72261 1.46268 1.29491 1.20401 0.95594 0.98823 0.94243 1.20864 0.97515 0.98781 0.93903 1.20918 0.90721 1.01030 1.00106 1.20872 0.86401 1.05911 0.92892 1.98346 1.30285 1.97020 1.79647 1.20972 0.98709 1.00987 0.92227 1.21175 0.90834 0.98129 1.00797 1.21405 0.89835 1.00759 0.86032 1.22697 1.02527 0.91821 1.00228 1.23709 1.01970 0.95568 1.06361 0.92196 0.77385 0.85217 0.85119 0.84990 0.84342 0.87133 0.88957 0.89586 0.89215 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.03 10.86 55.50 0.60 -21.43 16 2 C 0.05 1.16 4.95 -17.47 -0.09 1.07 16 3 Si 0.92 20.30 29.56 -169.99 -5.02 15.27 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.31 -8.39 8.54 -14.93 -0.13 -8.52 16 8 H 0.09 2.63 7.65 -52.49 -0.40 2.23 16 9 N -0.41 -9.94 2.90 -107.73 -0.31 -10.25 16 10 C 0.43 10.24 6.87 -10.99 -0.08 10.17 16 11 O -0.57 -15.50 16.16 -14.14 -0.23 -15.73 16 12 C 0.13 2.45 2.92 -29.04 -0.08 2.37 16 13 H 0.12 2.11 5.57 -51.93 -0.29 1.82 16 14 O -0.54 -9.74 12.94 -54.92 -0.71 -10.45 16 15 C -0.09 -1.50 4.47 -104.62 -0.47 -1.97 16 16 C -0.09 -1.46 9.24 -39.59 -0.37 -1.83 16 17 C -0.11 -1.58 9.83 -39.55 -0.39 -1.96 16 18 C -0.03 -0.49 6.32 -39.50 -0.25 -0.74 16 19 Cl -0.08 -1.04 28.96 -51.86 -1.50 -2.55 16 20 C -0.11 -1.54 9.83 -39.55 -0.39 -1.93 16 21 C -0.09 -1.36 7.12 -39.59 -0.28 -1.65 16 22 C 0.12 2.58 2.07 -67.93 -0.14 2.44 16 23 C -0.14 -2.61 8.72 -26.73 -0.23 -2.84 16 24 C -0.24 -3.93 7.48 -26.73 -0.20 -4.13 16 25 H 0.27 6.53 8.32 -40.82 -0.34 6.19 16 26 H 0.38 6.02 7.35 45.56 0.33 6.35 16 27 H 0.13 1.92 7.01 -52.49 -0.37 1.55 16 28 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 30 H 0.14 1.85 5.07 -52.49 -0.27 1.59 16 31 H 0.11 2.39 6.47 -51.93 -0.34 2.05 16 32 H 0.09 1.94 7.91 -51.92 -0.41 1.53 16 33 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 34 H 0.09 1.20 6.95 -51.93 -0.36 0.84 16 35 H 0.09 1.47 7.60 -51.93 -0.39 1.07 16 LS Contribution 305.20 15.07 4.60 4.60 Total: -1.00 -29.86 305.20 -8.56 -38.42 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -2.90 Total: 11.62 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -3.09 Total: -9.52 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: 0.29 Total: -31.68 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.94 Total: -26.17 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.50 Total: -2.55 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.86 -8.56 -38.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291530601.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.454 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds