Wall clock time and date at job start Tue Mar 31 2020 06:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 119.99958 * 2 1 4 4 H 1.48502 * 109.46717 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47082 * 300.00198 * 3 2 1 6 6 H 1.48494 * 109.47160 * 60.00488 * 3 2 1 7 7 C 1.38951 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00085 * 175.97925 * 7 2 1 9 9 N 1.37101 * 119.99865 * 355.98497 * 7 2 1 10 10 C 1.34777 * 120.00120 * 146.35142 * 9 7 2 11 11 O 1.21296 * 119.99627 * 355.86020 * 10 9 7 12 12 C 1.50699 * 120.00136 * 175.85673 * 10 9 7 13 13 H 1.09006 * 109.46957 * 310.57028 * 12 10 9 14 14 O 1.42897 * 109.46956 * 190.57466 * 12 10 9 15 15 C 1.50697 * 109.47229 * 70.57193 * 12 10 9 16 16 C 1.38241 * 119.98550 * 74.81207 * 15 12 10 17 17 C 1.38217 * 120.00789 * 179.72934 * 16 15 12 18 18 C 1.38354 * 119.98862 * 0.54244 * 17 16 15 19 19 Cl 1.73600 * 120.01018 * 179.70756 * 18 17 16 20 20 C 1.38351 * 119.97027 * 359.73115 * 18 17 16 21 21 C 1.38216 * 119.99039 * 359.97438 * 20 18 17 22 22 C 1.46501 * 120.00002 * 326.62806 * 9 7 2 23 23 C 1.52999 * 117.49674 * 315.12593 * 22 9 7 24 24 C 1.52997 * 117.49723 * 246.50522 * 22 9 7 25 25 H 0.96992 * 119.99787 * 5.01047 * 1 2 3 26 26 H 0.96697 * 114.00148 * 299.99403 * 14 12 10 27 27 H 1.08001 * 119.99001 * 359.97438 * 16 15 12 28 28 H 1.07998 * 120.00450 * 180.27505 * 17 16 15 29 29 H 1.08004 * 120.00235 * 179.97438 * 20 18 17 30 30 H 1.07998 * 119.99327 * 180.02562 * 21 20 18 31 31 H 1.08999 * 115.54943 * 100.83380 * 22 9 7 32 32 H 1.09008 * 117.50130 * 0.02562 * 23 22 9 33 33 H 1.08998 * 117.50087 * 145.01900 * 23 22 9 34 34 H 1.08999 * 117.50091 * 214.97332 * 24 22 9 35 35 H 1.09006 * 117.50195 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0869 -1.2045 -0.0661 9 7 1.3259 -2.3892 0.0821 10 6 1.7914 -3.4809 -0.5567 11 8 2.7723 -3.3968 -1.2652 12 6 1.0933 -4.8061 -0.3906 13 1 0.9358 -5.0034 0.6698 14 8 1.8995 -5.8430 -0.9534 15 6 -0.2373 -4.7649 -1.0970 16 6 -0.2896 -4.8359 -2.4766 17 6 -1.5100 -4.8038 -3.1246 18 6 -2.6787 -4.6894 -2.3930 19 17 -4.2113 -4.6414 -3.2068 20 6 -2.6252 -4.6127 -1.0126 21 6 -1.4046 -4.6510 -0.3653 22 6 0.0869 -2.4683 0.8597 23 6 0.0771 -1.8118 2.2417 24 6 0.0976 -3.3368 2.1193 25 1 -0.4849 0.8368 -0.0734 26 1 2.0806 -5.7323 -1.8968 27 1 0.6231 -4.9203 -3.0478 28 1 -1.5510 -4.8637 -4.2022 29 1 -3.5372 -4.5230 -0.4410 30 1 -1.3629 -4.5916 0.7122 31 1 -0.8353 -2.4345 0.2795 32 1 0.9925 -1.3207 2.5721 33 1 -0.8515 -1.3458 2.5709 34 1 -0.8176 -3.8739 2.3681 35 1 1.0264 -3.8497 2.3691 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291530601.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:20 Heat of formation + Delta-G solvation = -45.790901 kcal Electronic energy + Delta-G solvation = -22150.924414 eV Core-core repulsion = 18754.369735 eV Total energy + Delta-G solvation = -3396.554679 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.49120 -39.79357 -38.34678 -37.56081 -36.84633 -34.91592 -33.23045 -32.32082 -31.96225 -28.47558 -26.38729 -24.04680 -23.58423 -22.84980 -22.60208 -21.07393 -18.94682 -18.66203 -18.21682 -17.37455 -17.03129 -16.75066 -16.25104 -15.85848 -15.58535 -15.20818 -14.87028 -14.62229 -14.36185 -14.31470 -13.88245 -13.54608 -13.25553 -13.02263 -12.80756 -12.57504 -12.50123 -12.34447 -12.19228 -12.12329 -11.77525 -11.74282 -11.50251 -11.05909 -10.68717 -10.32664 -9.98093 -9.56400 -9.48110 -8.30171 -6.03219 0.07822 0.33068 1.12938 1.33532 1.39856 1.50764 1.91180 2.24337 2.58052 2.89435 2.98452 3.17779 3.49563 3.67057 3.74761 3.91714 3.94083 4.20304 4.23230 4.33268 4.39151 4.58679 4.59704 4.66521 4.80894 4.98186 5.15393 5.17467 5.22613 5.38634 5.44274 5.47420 5.51852 5.77931 6.11900 6.44723 6.57128 7.16191 7.42690 7.97972 8.72520 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.005891 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.213680 B = 4751.807697 C = 5327.746129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.019 3.981 3 Si 0.973 3.027 4 H -0.278 1.278 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.346 4.346 8 H 0.061 0.939 9 N -0.419 5.419 10 C 0.421 3.579 11 O -0.624 6.624 12 C 0.149 3.851 13 H 0.138 0.862 14 O -0.545 6.545 15 C -0.109 4.109 16 C -0.108 4.108 17 C -0.113 4.113 18 C -0.039 4.039 19 Cl -0.067 7.067 20 C -0.110 4.110 21 C -0.091 4.091 22 C 0.104 3.896 23 C -0.145 4.145 24 C -0.196 4.196 25 H 0.272 0.728 26 H 0.384 0.616 27 H 0.129 0.871 28 H 0.148 0.852 29 H 0.158 0.842 30 H 0.156 0.844 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.135 0.865 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.773 -8.390 0.709 12.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.185 4.185 3 Si 0.798 3.202 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.474 4.474 8 H 0.079 0.921 9 N -0.137 5.137 10 C 0.210 3.790 11 O -0.512 6.512 12 C 0.086 3.914 13 H 0.156 0.844 14 O -0.351 6.351 15 C -0.110 4.110 16 C -0.126 4.126 17 C -0.132 4.132 18 C -0.066 4.066 19 Cl -0.038 7.038 20 C -0.128 4.128 21 C -0.108 4.108 22 C -0.001 4.001 23 C -0.182 4.182 24 C -0.234 4.234 25 H 0.082 0.918 26 H 0.234 0.766 27 H 0.147 0.853 28 H 0.166 0.834 29 H 0.176 0.824 30 H 0.174 0.826 31 H 0.122 0.878 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.153 0.847 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.624 -8.409 0.980 12.818 hybrid contribution 0.669 1.497 -0.929 1.885 sum -8.955 -6.912 0.051 11.312 Atomic orbital electron populations 1.69903 1.06215 1.28387 1.46409 1.25894 0.96331 1.01390 0.94918 0.85182 0.78359 0.78438 0.78266 1.20265 1.20368 1.19055 1.19378 0.91198 0.83735 1.53055 0.92102 1.43222 1.21467 1.07920 1.41102 1.21595 0.87206 0.87810 0.82401 1.90491 1.31027 1.86306 1.43353 1.20635 0.86326 0.84881 0.99511 0.84442 1.86487 1.72486 1.45868 1.30246 1.20316 0.95104 1.00930 0.94646 1.21004 0.98269 0.99362 0.93985 1.21116 0.90356 1.00583 1.01116 1.21066 0.86967 1.05169 0.93391 1.98353 1.29157 1.96897 1.79421 1.21281 0.99342 0.99877 0.92302 1.21356 0.90439 0.97411 1.01640 1.21376 0.87917 1.04320 0.86453 1.22668 1.01982 0.94119 0.99440 1.23792 1.04085 0.94041 1.01483 0.91843 0.76564 0.85328 0.83429 0.82395 0.82612 0.87845 0.91459 0.88281 0.84702 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -44.01 10.86 21.66 0.24 -43.77 16 2 C 0.02 0.99 4.95 84.93 0.42 1.41 16 3 Si 0.97 41.98 29.56 68.60 2.03 44.01 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 6 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.35 -19.14 8.54 84.04 0.72 -18.42 16 8 H 0.06 3.67 7.65 -2.91 -0.02 3.64 16 9 N -0.42 -20.67 2.90 -613.13 -1.78 -22.45 16 10 C 0.42 20.30 6.87 87.66 0.60 20.90 16 11 O -0.62 -35.16 16.16 15.74 0.25 -34.91 16 12 C 0.15 5.45 2.92 29.10 0.09 5.53 16 13 H 0.14 4.50 5.57 -2.38 -0.01 4.48 16 14 O -0.54 -19.55 12.94 -130.16 -1.68 -21.24 16 15 C -0.11 -3.51 4.47 -19.86 -0.09 -3.60 16 16 C -0.11 -3.36 9.24 22.27 0.21 -3.15 16 17 C -0.11 -3.10 9.83 22.29 0.22 -2.89 16 18 C -0.04 -1.03 6.32 22.32 0.14 -0.89 16 19 Cl -0.07 -1.55 28.96 -2.72 -0.08 -1.63 16 20 C -0.11 -2.73 9.83 22.29 0.22 -2.51 16 21 C -0.09 -2.47 7.12 22.26 0.16 -2.31 16 22 C 0.10 4.16 2.07 44.99 0.09 4.25 16 23 C -0.14 -5.38 8.72 30.59 0.27 -5.11 16 24 C -0.20 -5.92 7.48 30.59 0.23 -5.69 16 25 H 0.27 12.99 8.32 -92.71 -0.77 12.22 16 26 H 0.38 12.51 7.35 -74.06 -0.54 11.97 16 27 H 0.13 3.89 7.01 -2.91 -0.02 3.87 16 28 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 29 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 30 H 0.16 3.55 5.07 -2.91 -0.01 3.54 16 31 H 0.10 4.31 6.47 -2.39 -0.02 4.29 16 32 H 0.07 2.84 7.91 -2.38 -0.02 2.82 16 33 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 34 H 0.14 2.88 6.95 -2.39 -0.02 2.86 16 35 H 0.09 2.71 7.60 -2.38 -0.02 2.69 16 Total: -1.00 -65.95 305.20 2.85 -63.11 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.60 Total: 29.34 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: 3.27 Total: -12.46 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: -1.54 Total: -66.22 kcal Atomic # 8 Polarization: -54.71 SS G_CDS: -1.43 Total: -56.14 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -65.95 2.85 -63.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291530601.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.315 kcal (2) G-P(sol) polarization free energy of solvation -65.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds