Wall clock time and date at job start Tue Mar 31 2020 06:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86803 * 120.00261 * 2 1 4 4 H 1.48499 * 109.46736 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47377 * 120.00108 * 3 2 1 6 6 H 1.48502 * 109.46822 * 240.00182 * 3 2 1 7 7 C 1.38957 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99835 * 195.55426 * 7 2 1 9 9 N 1.37096 * 119.99693 * 15.55935 * 7 2 1 10 10 C 1.34773 * 120.00337 * 42.92963 * 9 7 2 11 11 O 1.21288 * 119.99923 * 4.93951 * 10 9 7 12 12 C 1.50703 * 120.00133 * 184.94605 * 10 9 7 13 13 H 1.09004 * 109.47344 * 46.05454 * 12 10 9 14 14 O 1.42900 * 109.47290 * 166.05685 * 12 10 9 15 15 C 1.50703 * 109.46600 * 286.05765 * 12 10 9 16 16 C 1.38239 * 119.98542 * 283.69688 * 15 12 10 17 17 C 1.38222 * 120.00979 * 179.72933 * 16 15 12 18 18 C 1.38351 * 119.98702 * 0.55174 * 17 16 15 19 19 Cl 1.73596 * 120.01454 * 179.70466 * 18 17 16 20 20 C 1.38350 * 119.97000 * 359.72586 * 18 17 16 21 21 C 1.38208 * 119.99208 * 359.97438 * 20 18 17 22 22 C 1.46503 * 119.99419 * 222.92488 * 9 7 2 23 23 C 1.52998 * 117.50339 * 3.74181 * 22 9 7 24 24 C 1.53002 * 60.00111 * 252.50954 * 23 22 9 25 25 H 0.96997 * 120.00264 * 354.96549 * 1 2 3 26 26 H 0.96700 * 113.99743 * 59.99631 * 14 12 10 27 27 H 1.07999 * 119.99209 * 0.02562 * 16 15 12 28 28 H 1.08001 * 120.00417 * 180.27664 * 17 16 15 29 29 H 1.08009 * 120.00278 * 179.97438 * 20 18 17 30 30 H 1.08005 * 119.99628 * 180.02562 * 21 20 18 31 31 H 1.09005 * 115.54699 * 149.45177 * 22 9 7 32 32 H 1.08999 * 117.49621 * 359.97438 * 23 22 9 33 33 H 1.08994 * 117.49788 * 145.01520 * 23 22 9 34 34 H 1.09000 * 117.49419 * 252.50882 * 24 23 22 35 35 H 1.08997 * 117.49723 * 107.48747 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 1.2831 2.7464 -0.0006 5 1 3.1019 1.6964 1.2124 6 1 3.1018 1.6963 -1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0591 -1.2204 0.2514 9 7 1.3609 -2.3690 -0.3174 10 6 0.5006 -2.4007 -1.3544 11 8 0.3666 -1.4241 -2.0611 12 6 -0.2949 -3.6493 -1.6356 13 1 -0.7194 -4.0270 -0.7054 14 8 -1.3490 -3.3463 -2.5517 15 6 0.6081 -4.6954 -2.2369 16 6 0.9928 -4.5975 -3.5611 17 6 1.8255 -5.5536 -4.1115 18 6 2.2647 -6.6148 -3.3401 19 17 3.3043 -7.8201 -4.0329 20 6 1.8746 -6.7152 -2.0166 21 6 1.0470 -5.7553 -1.4655 22 6 1.6040 -3.5803 0.4700 23 6 2.5234 -3.4593 1.6869 24 6 3.0111 -4.1796 0.4283 25 1 -0.4850 0.8368 0.0737 26 1 -1.0438 -3.0045 -3.4032 27 1 0.6465 -3.7712 -4.1642 28 1 2.1296 -5.4746 -5.1448 29 1 2.2168 -7.5437 -1.4140 30 1 0.7427 -5.8334 -0.4321 31 1 0.7643 -4.2718 0.5400 32 1 2.9478 -2.4785 1.9014 33 1 2.2885 -4.0711 2.5579 34 1 3.0972 -5.2654 0.4714 35 1 3.7560 -3.6727 -0.1849 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291530603.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:23 Heat of formation + Delta-G solvation = -20.869103 kcal Electronic energy + Delta-G solvation = -22090.926101 eV Core-core repulsion = 18695.452113 eV Total energy + Delta-G solvation = -3395.473989 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.94356 -38.31515 -36.82394 -36.34712 -35.25728 -32.82181 -31.59848 -30.98231 -30.58884 -26.84196 -24.54187 -22.88082 -21.96015 -21.61058 -21.09731 -19.53354 -17.56130 -17.24639 -16.32071 -15.78574 -15.64659 -14.90875 -14.75203 -14.25774 -13.91881 -13.61868 -13.49167 -13.43933 -13.12669 -12.70287 -12.21063 -11.99132 -11.62910 -11.47309 -11.35486 -11.01872 -10.96693 -10.89033 -10.75169 -10.65820 -10.23395 -10.21180 -10.03566 -9.76962 -8.93551 -8.80389 -8.65954 -7.90297 -7.11159 -6.17268 -3.93748 1.20008 1.38446 2.13970 3.26209 3.33811 3.35936 3.66718 3.96152 4.18757 4.60292 4.69172 4.81138 4.92113 4.94891 5.03279 5.24610 5.35245 5.43526 5.51300 5.59012 5.70602 5.73459 5.80692 5.96767 6.03079 6.18620 6.26261 6.28634 6.37417 6.64794 6.67178 6.84637 6.87066 7.54479 7.96458 8.19191 8.96556 9.04761 9.55947 10.15206 10.91737 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.020048 B = 0.005243 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.346069 B = 5339.027758 C = 5768.237989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.070 3.930 3 Si 0.916 3.084 4 H -0.285 1.285 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.347 4.347 8 H 0.079 0.921 9 N -0.418 5.418 10 C 0.465 3.535 11 O -0.525 6.525 12 C 0.130 3.870 13 H 0.113 0.887 14 O -0.537 6.537 15 C -0.087 4.087 16 C -0.093 4.093 17 C -0.108 4.108 18 C -0.038 4.038 19 Cl -0.082 7.082 20 C -0.109 4.109 21 C -0.089 4.089 22 C 0.070 3.930 23 C -0.175 4.175 24 C -0.199 4.199 25 H 0.267 0.733 26 H 0.376 0.624 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.238 -13.374 -2.816 14.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.141 4.141 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.473 4.473 8 H 0.096 0.904 9 N -0.140 5.140 10 C 0.251 3.749 11 O -0.403 6.403 12 C 0.067 3.933 13 H 0.131 0.869 14 O -0.342 6.342 15 C -0.088 4.088 16 C -0.111 4.111 17 C -0.127 4.127 18 C -0.064 4.064 19 Cl -0.054 7.054 20 C -0.128 4.128 21 C -0.108 4.108 22 C -0.037 4.037 23 C -0.213 4.213 24 C -0.238 4.238 25 H 0.077 0.923 26 H 0.225 0.775 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.686 -13.023 -2.839 13.597 hybrid contribution 0.899 0.849 -0.271 1.265 sum 3.584 -12.174 -3.110 13.066 Atomic orbital electron populations 1.69796 1.06439 1.27750 1.42577 1.25259 0.94929 0.99446 0.94492 0.86221 0.79216 0.81770 0.78525 1.21084 1.20280 1.19952 1.18855 0.93499 0.83271 1.51705 0.90382 1.42734 1.40217 1.06976 1.24036 1.20129 0.83995 0.88453 0.82310 1.90529 1.65624 1.35704 1.48429 1.20789 0.87512 0.92004 0.92989 0.86917 1.86545 1.32381 1.86554 1.28758 1.20537 0.98132 0.95702 0.94443 1.20881 0.96916 0.98328 0.94987 1.20939 0.98228 0.93431 1.00094 1.20857 0.98227 0.92948 0.94397 1.98348 1.66258 1.55916 1.84833 1.20931 0.98676 0.99939 0.93216 1.20993 0.97011 0.92970 0.99787 1.21829 0.92141 0.91797 0.97888 1.23118 1.04322 1.02570 0.91280 1.23290 0.99840 0.98545 1.02119 0.92331 0.77500 0.85114 0.85129 0.85088 0.84936 0.88164 0.87463 0.89700 0.89706 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.35 11.57 55.50 0.64 -23.70 16 2 C 0.07 1.92 4.48 -17.47 -0.08 1.84 16 3 Si 0.92 21.59 29.58 -169.99 -5.03 16.56 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.35 -9.20 7.96 -14.93 -0.12 -9.32 16 8 H 0.08 2.01 7.19 -52.49 -0.38 1.63 16 9 N -0.42 -10.04 2.85 -107.72 -0.31 -10.35 16 10 C 0.46 11.34 6.10 -10.99 -0.07 11.27 16 11 O -0.53 -14.95 14.13 -13.96 -0.20 -15.15 16 12 C 0.13 2.51 2.92 -29.03 -0.08 2.42 16 13 H 0.11 2.06 6.79 -51.93 -0.35 1.71 16 14 O -0.54 -10.45 12.95 -54.74 -0.71 -11.16 16 15 C -0.09 -1.39 4.59 -104.62 -0.48 -1.87 16 16 C -0.09 -1.40 9.26 -39.59 -0.37 -1.76 16 17 C -0.11 -1.44 9.83 -39.55 -0.39 -1.83 16 18 C -0.04 -0.49 6.32 -39.50 -0.25 -0.74 16 19 Cl -0.08 -0.95 28.96 -51.86 -1.50 -2.45 16 20 C -0.11 -1.35 9.83 -39.55 -0.39 -1.74 16 21 C -0.09 -1.22 7.32 -39.59 -0.29 -1.51 16 22 C 0.07 1.31 4.43 -67.93 -0.30 1.00 16 23 C -0.18 -2.99 9.79 -26.73 -0.26 -3.26 16 24 C -0.20 -3.23 9.47 -26.73 -0.25 -3.48 16 25 H 0.27 7.51 8.32 -40.82 -0.34 7.17 16 26 H 0.38 6.49 7.27 45.56 0.33 6.82 16 27 H 0.13 1.89 6.94 -52.49 -0.36 1.53 16 28 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 29 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 30 H 0.13 1.58 6.29 -52.48 -0.33 1.25 16 31 H 0.10 1.65 4.75 -51.93 -0.25 1.41 16 32 H 0.11 2.06 6.70 -51.93 -0.35 1.71 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 35 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 308.38 15.07 4.65 4.65 Total: -1.00 -32.24 308.38 -8.72 -40.95 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -2.93 Total: 9.63 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -3.33 Total: -8.97 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.34 Total: -34.05 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.91 Total: -26.31 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.50 Total: -2.45 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.24 -8.72 -40.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291530603.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.083 kcal (2) G-P(sol) polarization free energy of solvation -32.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds