Wall clock time and date at job start Tue Mar 31 2020 06:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86803 * 120.00261 * 2 1 4 4 H 1.48499 * 109.46736 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47377 * 120.00108 * 3 2 1 6 6 H 1.48502 * 109.46822 * 240.00182 * 3 2 1 7 7 C 1.38957 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99835 * 195.55426 * 7 2 1 9 9 N 1.37096 * 119.99693 * 15.55935 * 7 2 1 10 10 C 1.34773 * 120.00337 * 42.92963 * 9 7 2 11 11 O 1.21288 * 119.99923 * 4.93951 * 10 9 7 12 12 C 1.50703 * 120.00133 * 184.94605 * 10 9 7 13 13 H 1.09004 * 109.47344 * 46.05454 * 12 10 9 14 14 O 1.42900 * 109.47290 * 166.05685 * 12 10 9 15 15 C 1.50703 * 109.46600 * 286.05765 * 12 10 9 16 16 C 1.38239 * 119.98542 * 283.69688 * 15 12 10 17 17 C 1.38222 * 120.00979 * 179.72933 * 16 15 12 18 18 C 1.38351 * 119.98702 * 0.55174 * 17 16 15 19 19 Cl 1.73596 * 120.01454 * 179.70466 * 18 17 16 20 20 C 1.38350 * 119.97000 * 359.72586 * 18 17 16 21 21 C 1.38208 * 119.99208 * 359.97438 * 20 18 17 22 22 C 1.46503 * 119.99419 * 222.92488 * 9 7 2 23 23 C 1.52998 * 117.50339 * 3.74181 * 22 9 7 24 24 C 1.53002 * 60.00111 * 252.50954 * 23 22 9 25 25 H 0.96997 * 120.00264 * 354.96549 * 1 2 3 26 26 H 0.96700 * 113.99743 * 59.99631 * 14 12 10 27 27 H 1.07999 * 119.99209 * 0.02562 * 16 15 12 28 28 H 1.08001 * 120.00417 * 180.27664 * 17 16 15 29 29 H 1.08009 * 120.00278 * 179.97438 * 20 18 17 30 30 H 1.08005 * 119.99628 * 180.02562 * 21 20 18 31 31 H 1.09005 * 115.54699 * 149.45177 * 22 9 7 32 32 H 1.08999 * 117.49621 * 359.97438 * 23 22 9 33 33 H 1.08994 * 117.49788 * 145.01520 * 23 22 9 34 34 H 1.09000 * 117.49419 * 252.50882 * 24 23 22 35 35 H 1.08997 * 117.49723 * 107.48747 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 1.2831 2.7464 -0.0006 5 1 3.1019 1.6964 1.2124 6 1 3.1018 1.6963 -1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0591 -1.2204 0.2514 9 7 1.3609 -2.3690 -0.3174 10 6 0.5006 -2.4007 -1.3544 11 8 0.3666 -1.4241 -2.0611 12 6 -0.2949 -3.6493 -1.6356 13 1 -0.7194 -4.0270 -0.7054 14 8 -1.3490 -3.3463 -2.5517 15 6 0.6081 -4.6954 -2.2369 16 6 0.9928 -4.5975 -3.5611 17 6 1.8255 -5.5536 -4.1115 18 6 2.2647 -6.6148 -3.3401 19 17 3.3043 -7.8201 -4.0329 20 6 1.8746 -6.7152 -2.0166 21 6 1.0470 -5.7553 -1.4655 22 6 1.6040 -3.5803 0.4700 23 6 2.5234 -3.4593 1.6869 24 6 3.0111 -4.1796 0.4283 25 1 -0.4850 0.8368 0.0737 26 1 -1.0438 -3.0045 -3.4032 27 1 0.6465 -3.7712 -4.1642 28 1 2.1296 -5.4746 -5.1448 29 1 2.2168 -7.5437 -1.4140 30 1 0.7427 -5.8334 -0.4321 31 1 0.7643 -4.2718 0.5400 32 1 2.9478 -2.4785 1.9014 33 1 2.2885 -4.0711 2.5579 34 1 3.0972 -5.2654 0.4714 35 1 3.7560 -3.6727 -0.1849 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291530603.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:22 Heat of formation + Delta-G solvation = -41.133194 kcal Electronic energy + Delta-G solvation = -22091.804818 eV Core-core repulsion = 18695.452113 eV Total energy + Delta-G solvation = -3396.352706 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.33631 -39.72666 -38.27467 -37.48975 -36.78591 -34.74214 -33.15308 -32.24668 -31.91121 -28.42505 -26.31598 -23.97224 -23.35611 -22.89575 -22.52887 -21.25685 -19.06888 -18.61658 -18.00948 -17.11808 -16.96856 -16.72705 -16.17200 -15.70040 -15.38370 -15.08841 -14.87493 -14.67041 -14.37102 -14.20058 -13.70408 -13.48787 -13.18680 -12.84202 -12.80148 -12.68720 -12.45680 -12.36222 -12.20515 -12.08421 -11.75195 -11.70497 -11.63619 -11.14777 -10.71679 -10.11977 -9.96333 -9.42111 -8.98070 -8.22536 -6.00789 0.10356 0.34880 1.15388 1.35166 1.43306 1.47047 2.16485 2.34573 2.61521 2.98659 3.11972 3.34040 3.49450 3.71973 3.75898 3.92551 4.02781 4.13445 4.23526 4.28502 4.38514 4.45754 4.62398 4.68249 4.92792 4.97382 5.04789 5.19651 5.23723 5.29419 5.45102 5.50825 5.52268 5.79124 6.15554 6.52588 6.99918 7.15154 7.65273 8.28279 8.86089 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.020048 B = 0.005243 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.346069 B = 5339.027758 C = 5768.237989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.018 3.982 3 Si 0.971 3.029 4 H -0.288 1.288 5 H -0.255 1.255 6 H -0.282 1.282 7 C -0.352 4.352 8 H 0.079 0.921 9 N -0.433 5.433 10 C 0.452 3.548 11 O -0.582 6.582 12 C 0.143 3.857 13 H 0.123 0.877 14 O -0.549 6.549 15 C -0.105 4.105 16 C -0.108 4.108 17 C -0.111 4.111 18 C -0.039 4.039 19 Cl -0.067 7.067 20 C -0.102 4.102 21 C -0.086 4.086 22 C 0.043 3.957 23 C -0.173 4.173 24 C -0.171 4.171 25 H 0.260 0.740 26 H 0.383 0.617 27 H 0.123 0.877 28 H 0.146 0.854 29 H 0.162 0.838 30 H 0.154 0.846 31 H 0.127 0.873 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.660 -16.180 -2.011 16.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.188 4.188 3 Si 0.796 3.204 4 H -0.214 1.214 5 H -0.180 1.180 6 H -0.208 1.208 7 C -0.480 4.480 8 H 0.096 0.904 9 N -0.154 5.154 10 C 0.240 3.760 11 O -0.464 6.464 12 C 0.081 3.919 13 H 0.140 0.860 14 O -0.355 6.355 15 C -0.106 4.106 16 C -0.126 4.126 17 C -0.130 4.130 18 C -0.066 4.066 19 Cl -0.038 7.038 20 C -0.120 4.120 21 C -0.104 4.104 22 C -0.062 4.062 23 C -0.210 4.210 24 C -0.210 4.210 25 H 0.069 0.931 26 H 0.232 0.768 27 H 0.141 0.859 28 H 0.164 0.836 29 H 0.180 0.820 30 H 0.171 0.829 31 H 0.144 0.856 32 H 0.098 0.902 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.143 -15.869 -2.003 16.523 hybrid contribution 0.547 1.584 -0.574 1.771 sum 4.690 -14.285 -2.577 15.254 Atomic orbital electron populations 1.69918 1.07888 1.27778 1.45205 1.26053 0.95566 1.02623 0.94561 0.85359 0.78071 0.78164 0.78824 1.21363 1.17970 1.20762 1.19098 0.93759 0.84708 1.50400 0.90385 1.42939 1.39899 1.07935 1.24631 1.21085 0.83843 0.89481 0.81568 1.90476 1.67480 1.38180 1.50246 1.20617 0.87203 0.90484 0.93634 0.86002 1.86493 1.33115 1.86642 1.29270 1.20294 0.99078 0.96120 0.95112 1.20939 0.97778 0.98905 0.95010 1.21090 0.97708 0.93177 1.01001 1.21040 0.97882 0.92867 0.94791 1.98360 1.65673 1.55102 1.84699 1.21242 0.97526 1.00099 0.93138 1.21191 0.96565 0.92136 1.00483 1.22142 0.94440 0.90667 0.98944 1.23190 1.03223 1.02143 0.92490 1.23269 0.96810 1.00484 1.00427 0.93084 0.76773 0.85885 0.83629 0.82001 0.82853 0.85576 0.90222 0.86093 0.85566 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -52.96 11.57 21.66 0.25 -52.71 16 2 C 0.02 1.02 4.48 84.93 0.38 1.40 16 3 Si 0.97 45.41 29.58 68.60 2.03 47.44 16 4 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 7 C -0.35 -19.04 7.96 84.04 0.67 -18.37 16 8 H 0.08 4.09 7.19 -2.91 -0.02 4.07 16 9 N -0.43 -20.93 2.85 -613.12 -1.75 -22.68 16 10 C 0.45 22.56 6.10 87.66 0.53 23.09 16 11 O -0.58 -34.65 14.13 15.60 0.22 -34.43 16 12 C 0.14 5.51 2.92 29.10 0.09 5.60 16 13 H 0.12 4.35 6.79 -2.39 -0.02 4.33 16 14 O -0.55 -21.85 12.95 -130.32 -1.69 -23.54 16 15 C -0.11 -3.23 4.59 -19.86 -0.09 -3.32 16 16 C -0.11 -3.19 9.26 22.27 0.21 -2.98 16 17 C -0.11 -2.77 9.83 22.29 0.22 -2.55 16 18 C -0.04 -0.89 6.32 22.32 0.14 -0.75 16 19 Cl -0.07 -1.34 28.96 -2.72 -0.08 -1.42 16 20 C -0.10 -2.09 9.83 22.29 0.22 -1.87 16 21 C -0.09 -2.04 7.32 22.26 0.16 -1.88 16 22 C 0.04 1.52 4.43 44.99 0.20 1.72 16 23 C -0.17 -5.47 9.79 30.59 0.30 -5.17 16 24 C -0.17 -5.00 9.47 30.60 0.29 -4.71 16 25 H 0.26 15.32 8.32 -92.71 -0.77 14.55 16 26 H 0.38 13.88 7.27 -74.06 -0.54 13.34 16 27 H 0.12 3.70 6.94 -2.91 -0.02 3.68 16 28 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 29 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 30 H 0.15 2.95 6.29 -2.91 -0.02 2.93 16 31 H 0.13 3.78 4.75 -2.38 -0.01 3.76 16 32 H 0.08 2.99 6.70 -2.39 -0.02 2.97 16 33 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.13 2.67 8.07 -2.39 -0.02 2.65 16 35 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -72.73 308.38 2.90 -69.83 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.60 Total: 27.30 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 3.31 Total: -9.80 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -1.50 Total: -75.39 kcal Atomic # 8 Polarization: -56.50 SS G_CDS: -1.47 Total: -57.96 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.42 kcal Total: -72.73 2.90 -69.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291530603.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.696 kcal (2) G-P(sol) polarization free energy of solvation -72.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds