Wall clock time and date at job start Tue Mar 31 2020 07:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86801 * 119.99612 * 2 1 4 4 H 1.48499 * 109.47226 * 239.99989 * 3 2 1 5 5 H 1.48499 * 109.47204 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46767 * 120.00363 * 3 2 1 7 7 C 1.40051 * 120.00339 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.46380 * 119.99695 * 359.97438 * 7 2 1 10 10 O 1.21683 * 119.99945 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99526 * 180.02562 * 9 7 2 12 12 C 1.47427 * 125.65431 * 0.02562 * 11 9 7 13 13 C 1.54905 * 104.93130 * 155.79784 * 12 11 9 14 14 C 1.55448 * 101.44888 * 37.00660 * 13 12 11 15 15 H 1.09004 * 110.70400 * 82.89130 * 14 13 12 16 16 O 1.42901 * 110.70756 * 206.14433 * 14 13 12 17 17 C 1.35924 * 116.99946 * 198.56454 * 16 14 13 18 18 C 1.38722 * 120.04411 * 174.39380 * 17 16 14 19 19 C 1.38145 * 119.95722 * 179.78730 * 18 17 16 20 20 C 1.38362 * 120.04077 * 0.46247 * 19 18 17 21 21 Cl 1.73605 * 119.95452 * 179.76563 * 20 19 18 22 22 C 1.38370 * 120.08894 * 359.78842 * 20 19 18 23 23 C 1.38142 * 120.04035 * 359.97438 * 22 20 19 24 24 C 1.47023 * 125.64775 * 180.02562 * 11 9 7 25 25 H 0.96994 * 120.00535 * 359.97438 * 1 2 3 26 26 H 1.08998 * 110.36993 * 274.70077 * 12 11 9 27 27 H 1.09003 * 110.35771 * 36.90831 * 12 11 9 28 28 H 1.08994 * 111.00862 * 155.14354 * 13 12 11 29 29 H 1.09006 * 111.00224 * 278.99733 * 13 12 11 30 30 H 1.08005 * 120.01996 * 0.02562 * 18 17 16 31 31 H 1.07992 * 119.97777 * 180.22814 * 19 18 17 32 32 H 1.07997 * 119.98125 * 179.97438 * 22 20 19 33 33 H 1.07992 * 120.02440 * 180.02562 * 23 22 20 34 34 H 1.09008 * 109.87711 * 300.49605 * 24 11 9 35 35 H 1.08998 * 109.88293 * 61.49808 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6966 -1.2125 5 1 1.2756 2.7465 0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0071 -1.2128 -0.0005 8 1 3.0871 -1.2128 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0584 -2.4805 -0.0005 11 7 1.9492 -3.6476 -0.0005 12 6 3.4163 -3.7928 0.0000 13 6 3.6788 -5.1907 0.6134 14 6 2.4964 -6.0120 0.0271 15 1 2.7294 -6.3579 -0.9801 16 8 2.1741 -7.1129 0.8793 17 6 1.4489 -8.1244 0.3331 18 6 1.1999 -9.2752 1.0665 19 6 0.4588 -10.3003 0.5112 20 6 -0.0268 -10.1837 -0.7791 21 17 -0.9527 -11.4759 -1.4769 22 6 0.2249 -9.0388 -1.5142 23 6 0.9613 -8.0095 -0.9606 24 6 1.3430 -4.9871 -0.0011 25 1 -0.4850 0.8399 0.0004 26 1 3.8025 -3.7465 -1.0182 27 1 3.8738 -3.0170 0.6141 28 1 4.6371 -5.5897 0.2808 29 1 3.6285 -5.1556 1.7017 30 1 1.5819 -9.3681 2.0725 31 1 0.2617 -11.1949 1.0832 32 1 -0.1547 -8.9498 -2.5214 33 1 1.1573 -7.1159 -1.5345 34 1 0.7159 -5.1105 0.8820 35 1 0.7449 -5.1230 -0.9021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294067827.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:27 Heat of formation + Delta-G solvation = -51.051825 kcal Electronic energy + Delta-G solvation = -20686.362634 eV Core-core repulsion = 17289.579824 eV Total energy + Delta-G solvation = -3396.782810 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.47125 -38.60964 -37.37754 -36.32564 -35.25194 -32.56564 -31.40794 -30.46089 -29.32289 -28.52478 -26.14645 -23.39800 -23.03357 -22.10901 -20.67392 -19.33119 -18.45857 -17.02171 -16.65230 -16.11377 -15.69595 -15.39087 -14.78464 -14.53530 -14.31268 -13.79656 -13.64453 -13.44042 -13.26189 -12.89029 -12.52999 -12.33783 -11.97826 -11.66866 -11.51363 -11.39647 -11.29888 -11.20946 -10.95110 -10.91178 -10.56686 -10.50167 -10.32791 -10.23738 -9.29666 -8.91040 -8.24140 -7.73836 -7.34628 -6.26818 -4.72530 1.04967 1.08054 2.01667 3.05181 3.11569 3.16795 3.18630 3.45787 4.02124 4.42964 4.48460 4.55036 4.63437 4.71355 4.87264 4.94601 5.05251 5.15315 5.29844 5.51568 5.64460 5.68888 5.71291 5.82111 5.91370 6.05962 6.07536 6.17765 6.26830 6.29400 6.45516 6.47796 7.21727 7.32254 7.36822 7.99853 8.29656 8.94300 9.36650 10.49220 10.67908 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.031955 B = 0.002998 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.015897 B = 9337.946914 C = 9895.812595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.086 3.914 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.539 4.539 8 H 0.071 0.929 9 C 0.571 3.429 10 O -0.573 6.573 11 N -0.643 5.643 12 C 0.119 3.881 13 C -0.124 4.124 14 C 0.069 3.931 15 H 0.086 0.914 16 O -0.298 6.298 17 C 0.144 3.856 18 C -0.144 4.144 19 C -0.072 4.072 20 C -0.078 4.078 21 Cl -0.079 7.079 22 C -0.067 4.067 23 C -0.195 4.195 24 C 0.097 3.903 25 H 0.270 0.730 26 H 0.053 0.947 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.062 0.938 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.860 -17.881 -0.980 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.134 4.134 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.575 4.575 8 H 0.089 0.911 9 C 0.378 3.622 10 O -0.455 6.455 11 N -0.385 5.385 12 C -0.006 4.006 13 C -0.162 4.162 14 C 0.012 3.988 15 H 0.104 0.896 16 O -0.211 6.211 17 C 0.097 3.903 18 C -0.163 4.163 19 C -0.091 4.091 20 C -0.105 4.105 21 Cl -0.050 7.050 22 C -0.086 4.086 23 C -0.214 4.214 24 C -0.027 4.027 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.153 0.847 33 H 0.159 0.841 34 H 0.080 0.920 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.931 -17.760 -0.846 18.451 hybrid contribution 0.308 0.695 -0.315 0.823 sum 5.239 -17.065 -1.161 17.889 Atomic orbital electron populations 1.70004 1.07112 1.27619 1.34793 1.25744 0.94665 1.00389 0.92590 0.86389 0.79802 0.80823 0.79511 1.19192 1.20481 1.19185 1.20829 0.93588 0.88784 1.54318 0.91126 1.18092 0.86712 0.81038 0.76386 1.90623 1.13896 1.85705 1.55303 1.48702 1.04724 1.04103 1.80955 1.21921 0.84347 0.94760 0.99559 1.22963 0.96017 0.94970 1.02273 1.23701 0.96553 0.84707 0.93818 0.89639 1.86164 1.67133 1.28005 1.39764 1.19145 0.91114 0.88243 0.91757 1.20385 1.03020 0.91659 1.01235 1.20812 0.96103 0.98937 0.93200 1.20751 1.02723 0.91725 0.95300 1.98353 1.72642 1.49534 1.84461 1.20854 0.96581 0.91182 0.99963 1.21398 1.03141 1.01114 0.95735 1.21983 0.94561 0.84638 1.01542 0.91877 0.92917 0.90190 0.89883 0.89604 0.84254 0.84461 0.84700 0.84121 0.92009 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.81 11.83 55.55 0.66 -22.15 16 2 C 0.09 2.37 5.50 -17.36 -0.10 2.28 16 3 Si 0.91 19.73 29.56 -169.99 -5.02 14.70 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.54 -14.93 8.98 -35.63 -0.32 -15.25 16 8 H 0.07 1.77 6.64 -52.49 -0.35 1.42 16 9 C 0.57 16.28 7.78 -12.99 -0.10 16.18 16 10 O -0.57 -18.77 15.35 5.20 0.08 -18.69 16 11 N -0.64 -14.48 3.33 -172.18 -0.57 -15.06 16 12 C 0.12 2.03 6.51 -2.53 -0.02 2.01 16 13 C -0.12 -1.68 6.83 -24.43 -0.17 -1.85 16 14 C 0.07 0.99 2.77 -24.74 -0.07 0.92 16 15 H 0.09 1.07 6.60 -51.93 -0.34 0.72 16 16 O -0.30 -4.27 9.88 -19.50 -0.19 -4.46 16 17 C 0.14 1.87 6.63 -39.22 -0.26 1.61 16 18 C -0.14 -1.61 9.99 -39.44 -0.39 -2.01 16 19 C -0.07 -0.73 9.82 -39.57 -0.39 -1.12 16 20 C -0.08 -0.86 6.32 -39.49 -0.25 -1.11 16 21 Cl -0.08 -0.80 28.95 -51.86 -1.50 -2.30 16 22 C -0.07 -0.76 9.82 -39.57 -0.39 -1.15 16 23 C -0.20 -2.42 8.78 -39.44 -0.35 -2.76 16 24 C 0.10 1.87 6.14 -3.07 -0.02 1.85 16 25 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 1.38 7.14 -51.93 -0.37 1.01 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.14 1.33 8.06 -52.48 -0.42 0.90 16 31 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.14 1.71 5.32 -52.49 -0.28 1.43 16 34 H 0.06 1.31 8.06 -51.92 -0.42 0.89 16 35 H 0.05 1.07 7.43 -51.93 -0.39 0.68 16 LS Contribution 314.16 15.07 4.73 4.73 Total: -1.00 -33.94 314.16 -8.45 -42.39 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -3.82 Total: 1.23 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -2.81 Total: -0.40 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.08 Total: -37.21 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.11 Total: -23.15 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.70 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.94 -8.45 -42.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294067827.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.664 kcal (2) G-P(sol) polarization free energy of solvation -33.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds