Wall clock time and date at job start Tue Mar 31 2020 07:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86803 * 120.00510 * 2 1 4 4 H 1.48495 * 109.47215 * 270.00526 * 3 2 1 5 5 H 1.48504 * 109.46564 * 30.00607 * 3 2 1 6 6 H 1.48504 * 109.47124 * 149.99910 * 3 2 1 7 7 C 1.40054 * 119.99640 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99986 * 180.02562 * 7 2 1 9 9 C 1.46370 * 120.00016 * 359.97438 * 7 2 1 10 10 O 1.21688 * 120.00131 * 0.02562 * 9 7 2 11 11 N 1.34782 * 120.00255 * 180.02562 * 9 7 2 12 12 C 1.47290 * 125.78788 * 359.97438 * 11 9 7 13 13 C 1.54328 * 107.30545 * 178.92194 * 12 11 9 14 14 C 1.55161 * 102.94096 * 337.82448 * 13 12 11 15 15 H 1.09001 * 111.03105 * 277.40573 * 14 13 12 16 16 O 1.42892 * 111.00480 * 153.57543 * 14 13 12 17 17 C 1.35917 * 117.00142 * 162.53978 * 16 14 13 18 18 C 1.38727 * 120.04220 * 4.99826 * 17 16 14 19 19 C 1.38149 * 119.95548 * 179.77035 * 18 17 16 20 20 C 1.38365 * 120.04378 * 0.50776 * 19 18 17 21 21 Cl 1.73594 * 119.95814 * 179.77035 * 20 19 18 22 22 C 1.38369 * 120.08427 * 359.74128 * 20 19 18 23 23 C 1.38147 * 120.04360 * 0.02562 * 22 20 19 24 24 C 1.47417 * 125.64878 * 180.02562 * 11 9 7 25 25 H 0.97005 * 119.99971 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.85436 * 59.50723 * 12 11 9 27 27 H 1.08998 * 109.87820 * 298.36144 * 12 11 9 28 28 H 1.08993 * 110.72114 * 219.45530 * 13 12 11 29 29 H 1.08998 * 110.71448 * 96.18178 * 13 12 11 30 30 H 1.07995 * 120.02272 * 0.02562 * 18 17 16 31 31 H 1.07998 * 119.97443 * 180.25427 * 19 18 17 32 32 H 1.08000 * 119.97800 * 180.02562 * 22 20 19 33 33 H 1.07998 * 120.02020 * 180.02562 * 23 22 20 34 34 H 1.09000 * 110.37147 * 85.26678 * 24 11 9 35 35 H 1.08998 * 110.37302 * 323.04647 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4882 2.0464 -1.4000 5 1 1.4383 2.6526 0.7002 6 1 3.5384 1.4400 0.7001 7 6 2.0068 -1.2129 -0.0005 8 1 3.0868 -1.2130 -0.0001 9 6 1.2749 -2.4805 -0.0005 10 8 0.0580 -2.4805 -0.0005 11 7 1.9487 -3.6478 -0.0005 12 6 3.4141 -3.7965 -0.0011 13 6 3.7221 -5.3085 0.0269 14 6 2.4206 -5.9175 0.6123 15 1 2.4156 -5.8573 1.7006 16 8 2.2450 -7.2668 0.1758 17 6 1.3710 -8.0341 0.8792 18 6 0.6198 -7.4719 1.9010 19 6 -0.2715 -8.2524 2.6117 20 6 -0.4075 -9.5963 2.3118 21 17 -1.5237 -10.5763 3.2102 22 6 0.3447 -10.1600 1.2964 23 6 1.2336 -9.3817 0.5803 24 6 1.3407 -4.9908 -0.0011 25 1 -0.4850 0.8401 0.0004 26 1 3.8353 -3.3161 0.8821 27 1 3.8316 -3.3497 -0.9033 28 1 4.5718 -5.5170 0.6768 29 1 3.9043 -5.6835 -0.9802 30 1 0.7286 -6.4239 2.1381 31 1 -0.8595 -7.8141 3.4045 32 1 0.2369 -11.2090 1.0636 33 1 1.8202 -9.8220 -0.2124 34 1 1.1078 -5.3014 -1.0196 35 1 0.4401 -4.9998 0.6128 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294067835.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:29 Heat of formation + Delta-G solvation = -51.543560 kcal Electronic energy + Delta-G solvation = -20720.315599 eV Core-core repulsion = 17323.511466 eV Total energy + Delta-G solvation = -3396.804133 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.44698 -38.59591 -37.37490 -36.31133 -35.26957 -32.57700 -31.38187 -30.48433 -29.31852 -28.49246 -26.15207 -23.41579 -22.99631 -22.09540 -20.63107 -19.32394 -18.49807 -17.06490 -16.60771 -16.02836 -15.68839 -15.30499 -14.87927 -14.46663 -14.33579 -13.74242 -13.67313 -13.36618 -13.32455 -12.95969 -12.59102 -12.36786 -12.01906 -11.61046 -11.51921 -11.35462 -11.28636 -11.17338 -10.94431 -10.91053 -10.52204 -10.47993 -10.37623 -10.21989 -9.27356 -8.92900 -8.22564 -7.75676 -7.35184 -6.28164 -4.73629 1.06901 1.09883 2.03779 3.03102 3.09418 3.16582 3.19785 3.47709 4.02163 4.44920 4.49112 4.54757 4.66523 4.71938 4.90439 4.97805 5.06091 5.17238 5.31851 5.51506 5.63316 5.67422 5.73179 5.84706 5.90169 6.07970 6.08612 6.18943 6.29331 6.30673 6.46469 6.48587 7.17846 7.33712 7.35948 7.98787 8.29313 8.93462 9.35379 10.47618 10.66434 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.026955 B = 0.003156 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.503261 B = 8870.120977 C = 9648.287564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.086 3.914 3 Si 0.910 3.090 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.571 3.429 10 O -0.573 6.573 11 N -0.643 5.643 12 C 0.122 3.878 13 C -0.122 4.122 14 C 0.065 3.935 15 H 0.087 0.913 16 O -0.299 6.299 17 C 0.143 3.857 18 C -0.194 4.194 19 C -0.066 4.066 20 C -0.078 4.078 21 Cl -0.078 7.078 22 C -0.073 4.073 23 C -0.145 4.145 24 C 0.096 3.904 25 H 0.270 0.730 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.143 0.857 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.057 0.943 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.103 -17.051 3.726 18.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.134 4.134 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.574 4.574 8 H 0.089 0.911 9 C 0.378 3.622 10 O -0.456 6.456 11 N -0.386 5.386 12 C -0.003 4.003 13 C -0.160 4.160 14 C 0.009 3.991 15 H 0.105 0.895 16 O -0.212 6.212 17 C 0.097 3.903 18 C -0.213 4.213 19 C -0.085 4.085 20 C -0.105 4.105 21 Cl -0.050 7.050 22 C -0.091 4.091 23 C -0.164 4.164 24 C -0.029 4.029 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.160 0.840 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.075 0.925 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.216 -16.971 3.635 17.861 hybrid contribution 0.288 0.826 0.207 0.899 sum 4.504 -16.145 3.842 17.196 Atomic orbital electron populations 1.70014 1.07112 1.27512 1.34823 1.25748 0.94669 1.00412 0.92581 0.86329 0.80125 0.81161 0.78928 1.19647 1.20375 1.18817 1.20865 0.93641 0.88773 1.54113 0.91117 1.18096 0.86699 0.81040 0.76394 1.90625 1.13848 1.85653 1.55426 1.48745 1.04641 1.04190 1.80997 1.21659 0.84259 0.92787 1.01581 1.22730 0.95381 0.95511 1.02369 1.23799 0.97702 0.78450 0.99194 0.89477 1.86102 1.57911 1.23685 1.53457 1.19125 0.89547 0.90951 0.90673 1.21442 0.99689 1.01575 0.98558 1.20877 0.97113 0.91440 0.99091 1.20755 0.98485 0.92385 0.98826 1.98352 1.61528 1.70580 1.74521 1.20805 0.94427 1.00197 0.93714 1.20365 1.02109 0.90865 1.03012 1.22244 0.95695 0.84784 1.00191 0.91932 0.92148 0.91957 0.89957 0.89790 0.83977 0.84652 0.84483 0.84297 0.92508 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.66 11.83 55.55 0.66 -22.00 16 2 C 0.09 2.36 5.50 -17.37 -0.10 2.26 16 3 Si 0.91 19.69 29.56 -169.99 -5.02 14.67 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.54 -14.86 9.07 -35.63 -0.32 -15.19 16 8 H 0.07 1.78 7.17 -52.49 -0.38 1.40 16 9 C 0.57 16.15 7.78 -12.99 -0.10 16.05 16 10 O -0.57 -18.57 15.27 5.20 0.08 -18.49 16 11 N -0.64 -14.40 3.33 -171.94 -0.57 -14.97 16 12 C 0.12 2.09 6.08 -2.92 -0.02 2.08 16 13 C -0.12 -1.63 6.69 -24.89 -0.17 -1.79 16 14 C 0.07 0.96 2.82 -24.56 -0.07 0.89 16 15 H 0.09 1.20 6.61 -51.93 -0.34 0.86 16 16 O -0.30 -4.20 9.96 -19.48 -0.19 -4.40 16 17 C 0.14 1.88 6.63 -39.22 -0.26 1.62 16 18 C -0.19 -2.52 8.72 -39.43 -0.34 -2.87 16 19 C -0.07 -0.79 9.82 -39.57 -0.39 -1.18 16 20 C -0.08 -0.88 6.32 -39.49 -0.25 -1.13 16 21 Cl -0.08 -0.82 28.95 -51.86 -1.50 -2.32 16 22 C -0.07 -0.75 9.82 -39.57 -0.39 -1.14 16 23 C -0.14 -1.61 9.99 -39.44 -0.39 -2.00 16 24 C 0.10 1.83 6.26 -2.51 -0.02 1.81 16 25 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.14 1.91 5.31 -52.49 -0.28 1.63 16 31 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.42 7.14 -51.93 -0.37 1.05 16 LS Contribution 315.13 15.07 4.75 4.75 Total: -1.00 -33.42 315.13 -8.51 -41.93 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -3.89 Total: 1.43 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -2.81 Total: -0.59 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.08 Total: -36.98 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.11 Total: -22.89 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.42 -8.51 -41.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294067835.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.614 kcal (2) G-P(sol) polarization free energy of solvation -33.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds