Wall clock time and date at job start Tue Mar 31 2020 07:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86803 * 120.00510 * 2 1 4 4 H 1.48495 * 109.47215 * 270.00526 * 3 2 1 5 5 H 1.48504 * 109.46564 * 30.00607 * 3 2 1 6 6 H 1.48504 * 109.47124 * 149.99910 * 3 2 1 7 7 C 1.40054 * 119.99640 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99986 * 180.02562 * 7 2 1 9 9 C 1.46370 * 120.00016 * 359.97438 * 7 2 1 10 10 O 1.21688 * 120.00131 * 0.02562 * 9 7 2 11 11 N 1.34782 * 120.00255 * 180.02562 * 9 7 2 12 12 C 1.47290 * 125.78788 * 359.97438 * 11 9 7 13 13 C 1.54328 * 107.30545 * 178.92194 * 12 11 9 14 14 C 1.55161 * 102.94096 * 337.82448 * 13 12 11 15 15 H 1.09001 * 111.03105 * 277.40573 * 14 13 12 16 16 O 1.42892 * 111.00480 * 153.57543 * 14 13 12 17 17 C 1.35917 * 117.00142 * 162.53978 * 16 14 13 18 18 C 1.38727 * 120.04220 * 4.99826 * 17 16 14 19 19 C 1.38149 * 119.95548 * 179.77035 * 18 17 16 20 20 C 1.38365 * 120.04378 * 0.50776 * 19 18 17 21 21 Cl 1.73594 * 119.95814 * 179.77035 * 20 19 18 22 22 C 1.38369 * 120.08427 * 359.74128 * 20 19 18 23 23 C 1.38147 * 120.04360 * 0.02562 * 22 20 19 24 24 C 1.47417 * 125.64878 * 180.02562 * 11 9 7 25 25 H 0.97005 * 119.99971 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.85436 * 59.50723 * 12 11 9 27 27 H 1.08998 * 109.87820 * 298.36144 * 12 11 9 28 28 H 1.08993 * 110.72114 * 219.45530 * 13 12 11 29 29 H 1.08998 * 110.71448 * 96.18178 * 13 12 11 30 30 H 1.07995 * 120.02272 * 0.02562 * 18 17 16 31 31 H 1.07998 * 119.97443 * 180.25427 * 19 18 17 32 32 H 1.08000 * 119.97800 * 180.02562 * 22 20 19 33 33 H 1.07998 * 120.02020 * 180.02562 * 23 22 20 34 34 H 1.09000 * 110.37147 * 85.26678 * 24 11 9 35 35 H 1.08998 * 110.37302 * 323.04647 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4882 2.0464 -1.4000 5 1 1.4383 2.6526 0.7002 6 1 3.5384 1.4400 0.7001 7 6 2.0068 -1.2129 -0.0005 8 1 3.0868 -1.2130 -0.0001 9 6 1.2749 -2.4805 -0.0005 10 8 0.0580 -2.4805 -0.0005 11 7 1.9487 -3.6478 -0.0005 12 6 3.4141 -3.7965 -0.0011 13 6 3.7221 -5.3085 0.0269 14 6 2.4206 -5.9175 0.6123 15 1 2.4156 -5.8573 1.7006 16 8 2.2450 -7.2668 0.1758 17 6 1.3710 -8.0341 0.8792 18 6 0.6198 -7.4719 1.9010 19 6 -0.2715 -8.2524 2.6117 20 6 -0.4075 -9.5963 2.3118 21 17 -1.5237 -10.5763 3.2102 22 6 0.3447 -10.1600 1.2964 23 6 1.2336 -9.3817 0.5803 24 6 1.3407 -4.9908 -0.0011 25 1 -0.4850 0.8401 0.0004 26 1 3.8353 -3.3161 0.8821 27 1 3.8316 -3.3497 -0.9033 28 1 4.5718 -5.5170 0.6768 29 1 3.9043 -5.6835 -0.9802 30 1 0.7286 -6.4239 2.1381 31 1 -0.8595 -7.8141 3.4045 32 1 0.2369 -11.2090 1.0636 33 1 1.8202 -9.8220 -0.2124 34 1 1.1078 -5.3014 -1.0196 35 1 0.4401 -4.9998 0.6128 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294067835.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:29 Heat of formation + Delta-G solvation = -72.882811 kcal Electronic energy + Delta-G solvation = -20721.240938 eV Core-core repulsion = 17323.511466 eV Total energy + Delta-G solvation = -3397.729472 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.53399 -40.00397 -38.73447 -37.42052 -36.82874 -34.68724 -32.38090 -31.86963 -30.43402 -29.98494 -28.08836 -24.78917 -24.08709 -23.25069 -21.82857 -21.17898 -19.54431 -18.76685 -17.77418 -17.56514 -17.06986 -16.67495 -16.15022 -16.07648 -15.54507 -15.32876 -14.72219 -14.62225 -14.55157 -14.19357 -14.01908 -13.68878 -13.32073 -13.22621 -13.07012 -12.79865 -12.71312 -12.51636 -12.35601 -12.28674 -12.02135 -11.89126 -11.63331 -11.52243 -10.96474 -10.17489 -9.96234 -9.24690 -9.15790 -8.33911 -6.90090 0.13902 0.18340 1.15262 1.39617 1.41033 1.56874 1.89744 2.23553 2.40385 2.54739 2.85964 3.37058 3.50315 3.64309 3.73140 3.73410 3.88955 4.07645 4.23822 4.29999 4.33048 4.53741 4.61433 4.70610 4.84797 4.89935 4.90880 4.99231 5.17723 5.18498 5.23807 5.28928 5.50929 5.55897 5.96409 6.24344 6.33108 6.82341 7.38104 8.38525 8.62001 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.026955 B = 0.003156 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.503261 B = 8870.120977 C = 9648.287564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.026 3.974 3 Si 1.001 2.999 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.245 1.245 7 C -0.561 4.561 8 H 0.092 0.908 9 C 0.551 3.449 10 O -0.633 6.633 11 N -0.652 5.652 12 C 0.113 3.887 13 C -0.105 4.105 14 C 0.083 3.917 15 H 0.097 0.903 16 O -0.299 6.299 17 C 0.121 3.879 18 C -0.207 4.207 19 C -0.076 4.076 20 C -0.082 4.082 21 Cl -0.070 7.070 22 C -0.066 4.066 23 C -0.139 4.139 24 C 0.093 3.907 25 H 0.275 0.725 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.122 0.878 29 H 0.096 0.904 30 H 0.129 0.871 31 H 0.142 0.858 32 H 0.166 0.834 33 H 0.162 0.838 34 H 0.046 0.954 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.675 -18.115 3.819 20.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.189 4.189 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.168 1.168 7 C -0.597 4.597 8 H 0.110 0.890 9 C 0.358 3.642 10 O -0.520 6.520 11 N -0.391 5.391 12 C -0.010 4.010 13 C -0.142 4.142 14 C 0.025 3.975 15 H 0.114 0.886 16 O -0.211 6.211 17 C 0.076 3.924 18 C -0.226 4.226 19 C -0.095 4.095 20 C -0.109 4.109 21 Cl -0.041 7.041 22 C -0.085 4.085 23 C -0.158 4.158 24 C -0.032 4.032 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.140 0.860 29 H 0.114 0.886 30 H 0.147 0.853 31 H 0.159 0.841 32 H 0.184 0.816 33 H 0.179 0.821 34 H 0.065 0.935 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.844 -18.100 3.731 19.707 hybrid contribution -0.588 1.003 0.190 1.177 sum 6.256 -17.098 3.920 18.624 Atomic orbital electron populations 1.70195 1.09677 1.29118 1.36144 1.27062 0.95550 1.05132 0.91140 0.84977 0.78853 0.74739 0.79498 1.18586 1.19852 1.16796 1.21385 0.94791 0.89246 1.54268 0.88970 1.18494 0.86345 0.83131 0.76185 1.90564 1.16285 1.87170 1.57979 1.48489 1.07255 1.03979 1.79382 1.21959 0.80804 0.96129 1.02066 1.22711 0.95562 0.91935 1.04013 1.23543 0.96313 0.78226 0.99381 0.88553 1.86091 1.58271 1.22892 1.53877 1.19392 0.90079 0.91814 0.91149 1.21402 1.00644 1.01179 0.99376 1.20994 0.97137 0.92010 0.99377 1.20917 0.98618 0.92234 0.99090 1.98357 1.61240 1.70154 1.74379 1.21144 0.93248 1.01461 0.92626 1.20662 1.01986 0.89910 1.03210 1.22328 0.96631 0.84620 0.99609 0.91466 0.91411 0.91651 0.86010 0.88573 0.85330 0.84056 0.81623 0.82055 0.93548 0.93734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.44 11.83 21.84 0.26 -50.18 16 2 C 0.03 1.46 5.50 85.31 0.47 1.93 16 3 Si 1.00 40.25 29.56 68.60 2.03 42.27 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 6 H -0.24 -9.01 7.11 99.48 0.71 -8.30 16 7 C -0.56 -31.52 9.07 24.83 0.23 -31.30 16 8 H 0.09 4.59 7.17 -2.91 -0.02 4.57 16 9 C 0.55 32.53 7.78 86.36 0.67 33.21 16 10 O -0.63 -43.52 15.27 -4.31 -0.07 -43.59 16 11 N -0.65 -29.92 3.33 -816.10 -2.72 -32.65 16 12 C 0.11 3.76 6.08 86.68 0.53 4.29 16 13 C -0.10 -2.50 6.69 31.79 0.21 -2.29 16 14 C 0.08 2.34 2.82 32.00 0.09 2.43 16 15 H 0.10 2.58 6.61 -2.39 -0.02 2.57 16 16 O -0.30 -7.97 9.96 -92.62 -0.92 -8.89 16 17 C 0.12 3.06 6.63 22.50 0.15 3.21 16 18 C -0.21 -5.45 8.72 22.37 0.19 -5.25 16 19 C -0.08 -1.81 9.82 22.28 0.22 -1.59 16 20 C -0.08 -1.74 6.32 22.33 0.14 -1.59 16 21 Cl -0.07 -1.36 28.95 -2.72 -0.08 -1.44 16 22 C -0.07 -1.20 9.82 22.28 0.22 -0.98 16 23 C -0.14 -2.77 9.99 22.36 0.22 -2.55 16 24 C 0.09 3.68 6.26 86.87 0.54 4.22 16 25 H 0.28 15.27 8.29 -92.70 -0.77 14.50 16 26 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 27 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.13 3.66 5.31 -2.91 -0.02 3.64 16 31 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 32 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 33 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.04 1.96 7.14 -2.39 -0.02 1.94 16 Total: -1.00 -76.90 315.13 3.50 -73.40 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 1.12 Total: 17.35 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 3.89 Total: 3.72 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -2.46 Total: -82.83 kcal Atomic # 8 Polarization: -51.49 SS G_CDS: -0.99 Total: -52.48 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.27 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Total: -76.90 3.50 -73.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294067835.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.516 kcal (2) G-P(sol) polarization free energy of solvation -76.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds