Wall clock time and date at job start Tue Mar 31 2020 06:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86798 * 120.00368 * 2 1 4 4 H 1.48499 * 109.47178 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47361 * 300.00187 * 3 2 1 6 6 H 1.48503 * 109.46705 * 60.00446 * 3 2 1 7 7 C 1.38802 * 119.99462 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99639 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00318 * 359.97438 * 7 2 1 10 10 C 1.81003 * 100.00187 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47327 * 180.02562 * 10 9 7 12 12 O 1.21294 * 119.99938 * 5.54618 * 11 10 9 13 13 N 1.34780 * 120.00246 * 185.54519 * 11 10 9 14 14 C 1.46927 * 120.54760 * 353.88414 * 13 11 10 15 15 C 1.53431 * 107.83448 * 224.52807 * 14 13 11 16 16 C 1.52837 * 108.85715 * 296.83522 * 15 14 13 17 17 C 1.50604 * 110.54495 * 51.32942 * 16 15 14 18 18 C 1.38523 * 118.89914 * 159.50382 * 17 16 15 19 19 C 1.38082 * 120.34220 * 179.79218 * 18 17 16 20 20 C 1.38533 * 120.12081 * 0.02919 * 19 18 17 21 21 F 1.35103 * 120.07137 * 180.02562 * 20 19 18 22 22 C 1.38254 * 119.85604 * 0.02562 * 20 19 18 23 23 C 1.38590 * 121.49432 * 339.41866 * 17 16 15 24 24 H 0.97003 * 119.99625 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.46931 * 59.99633 * 10 9 7 26 26 H 1.08999 * 109.46670 * 300.00204 * 10 9 7 27 27 H 1.09000 * 109.80196 * 344.13305 * 14 13 11 28 28 H 1.09002 * 109.79258 * 104.93020 * 14 13 11 29 29 H 1.09005 * 109.57215 * 56.57755 * 15 14 13 30 30 H 1.08997 * 109.57557 * 176.96117 * 15 14 13 31 31 H 1.09004 * 109.21968 * 291.07804 * 16 15 14 32 32 H 1.08991 * 109.24784 * 171.60847 * 16 15 14 33 33 H 1.07999 * 119.83201 * 359.81392 * 18 17 16 34 34 H 1.08001 * 119.93490 * 180.02562 * 19 18 17 35 35 H 1.07990 * 119.99190 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8917 2.3963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9872 -5.3028 -0.0012 12 8 0.7954 -5.5040 -0.1031 13 7 2.8387 -6.3414 0.1115 14 6 4.2913 -6.1206 0.1011 15 6 4.9207 -7.1777 -0.8157 16 6 4.6597 -8.5628 -0.2247 17 6 3.1960 -8.7389 0.0832 18 6 2.6886 -10.0214 0.2118 19 6 1.3520 -10.2172 0.4980 20 6 0.5087 -9.1299 0.6579 21 9 -0.7988 -9.3226 0.9383 22 6 1.0079 -7.8470 0.5298 23 6 2.3532 -7.6500 0.2409 24 1 -0.4850 0.8401 0.0004 25 1 3.1243 -3.7315 0.8894 26 1 3.1242 -3.7314 -0.8905 27 1 4.5105 -5.1234 -0.2803 28 1 4.6877 -6.2248 1.1111 29 1 4.4724 -7.1146 -1.8073 30 1 5.9947 -7.0065 -0.8869 31 1 5.2364 -8.6756 0.6934 32 1 4.9708 -9.3234 -0.9406 33 1 3.3417 -10.8725 0.0880 34 1 0.9634 -11.2200 0.5972 35 1 0.3526 -6.9978 0.6544 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299117461.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:18 Heat of formation + Delta-G solvation = -48.000317 kcal Electronic energy + Delta-G solvation = -20833.205008 eV Core-core repulsion = 17450.971017 eV Total energy + Delta-G solvation = -3382.233991 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.77690 -41.06172 -38.45230 -36.42851 -33.59833 -32.49545 -31.21427 -30.06706 -28.72413 -25.78119 -25.51564 -23.45469 -23.18486 -20.82414 -19.54615 -17.86273 -17.63305 -17.09307 -16.26015 -15.85255 -15.51486 -15.39993 -15.38030 -14.86362 -14.47303 -14.18121 -13.84054 -13.58824 -13.44895 -13.23401 -12.90378 -12.81122 -12.61358 -12.05750 -11.62558 -11.42397 -11.30579 -11.14016 -11.11653 -11.06548 -10.82353 -10.17746 -9.87925 -9.28803 -9.13711 -8.63936 -8.33815 -7.94887 -6.59655 -6.28369 -4.00430 1.07671 1.21959 2.59391 2.73740 3.17723 3.18426 3.26601 3.42210 3.58859 4.12187 4.26494 4.40225 4.52514 4.60721 4.71359 4.88490 5.01630 5.03948 5.07363 5.12606 5.33344 5.40563 5.44656 5.53572 5.60094 5.62787 5.70298 5.87070 5.95888 5.97774 6.05674 6.23058 6.31377 6.47281 7.04894 7.25888 7.53369 8.21751 8.28521 9.17125 10.79120 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.024169 B = 0.003850 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.212763 B = 7271.060724 C = 8354.607358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.537 4.537 8 H 0.074 0.926 9 S -0.057 6.057 10 C -0.151 4.151 11 C 0.534 3.466 12 O -0.487 6.487 13 N -0.559 5.559 14 C 0.100 3.900 15 C -0.137 4.137 16 C -0.073 4.073 17 C -0.136 4.136 18 C -0.071 4.071 19 C -0.183 4.183 20 C 0.118 3.882 21 F -0.138 7.138 22 C -0.191 4.191 23 C 0.197 3.803 24 H 0.269 0.731 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.594 -18.437 0.220 21.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.685 4.685 8 H 0.093 0.907 9 S 0.170 5.830 10 C -0.301 4.301 11 C 0.324 3.676 12 O -0.361 6.361 13 N -0.284 5.284 14 C -0.022 4.022 15 C -0.175 4.175 16 C -0.110 4.110 17 C -0.140 4.140 18 C -0.090 4.090 19 C -0.203 4.203 20 C 0.098 3.902 21 F -0.117 7.117 22 C -0.211 4.211 23 C 0.102 3.898 24 H 0.079 0.921 25 H 0.112 0.888 26 H 0.114 0.886 27 H 0.118 0.882 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 9.634 -18.498 0.159 20.857 hybrid contribution 1.713 1.178 0.064 2.080 sum 11.347 -17.320 0.223 20.707 Atomic orbital electron populations 1.70023 1.05981 1.27499 1.46621 1.25000 0.95037 0.99090 0.94389 0.86097 0.79556 0.81760 0.77971 1.19574 1.20511 1.20508 1.22875 0.94930 0.91394 1.59279 0.90748 1.85457 1.04372 0.96452 1.96744 1.23592 1.07036 0.94290 1.05227 1.20637 0.85973 0.86254 0.74740 1.90523 1.15709 1.84274 1.45569 1.45892 1.07887 1.04369 1.70235 1.22048 0.78109 1.00960 1.01055 1.21892 1.01610 0.94312 0.99653 1.20360 0.91649 0.97643 1.01377 1.19484 0.96187 0.91878 1.06405 1.20628 0.94310 0.95841 0.98225 1.20988 0.94112 0.98264 1.06941 1.17531 0.78347 0.93807 1.00548 1.91498 1.33256 1.95920 1.90988 1.22205 0.96479 0.98343 1.04103 1.17387 0.92090 0.83879 0.96483 0.92125 0.88777 0.88596 0.88238 0.90344 0.90709 0.89465 0.90420 0.90182 0.85012 0.85075 0.80190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.67 13.22 55.49 0.73 -24.93 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 20.92 29.55 -169.99 -5.02 15.90 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -14.83 9.50 30.94 0.29 -14.54 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 S -0.06 -1.50 20.58 -107.50 -2.21 -3.71 16 10 C -0.15 -2.91 4.57 36.00 0.16 -2.75 16 11 C 0.53 9.91 7.57 -10.99 -0.08 9.83 16 12 O -0.49 -10.70 12.54 5.55 0.07 -10.63 16 13 N -0.56 -8.21 2.97 -112.86 -0.34 -8.54 16 14 C 0.10 1.03 6.16 -3.59 -0.02 1.01 16 15 C -0.14 -1.10 6.11 -26.59 -0.16 -1.26 16 16 C -0.07 -0.58 5.77 -28.01 -0.16 -0.74 16 17 C -0.14 -1.54 5.76 -104.43 -0.60 -2.14 16 18 C -0.07 -0.72 9.66 -39.53 -0.38 -1.10 16 19 C -0.18 -2.11 10.02 -39.53 -0.40 -2.51 16 20 C 0.12 1.73 7.30 -39.47 -0.29 1.44 16 21 F -0.14 -2.14 17.27 2.25 0.04 -2.10 16 22 C -0.19 -3.14 8.85 -39.29 -0.35 -3.49 16 23 C 0.20 2.89 6.31 -83.63 -0.53 2.36 16 24 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.09 1.65 8.06 -51.92 -0.42 1.23 16 26 H 0.10 1.68 7.60 -51.92 -0.39 1.29 16 27 H 0.10 0.96 6.27 -51.93 -0.33 0.64 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.51 8.12 -51.93 -0.42 0.08 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 34 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.18 3.48 4.96 -53.69 -0.27 3.21 16 LS Contribution 310.36 15.07 4.68 4.68 Total: -1.00 -32.99 310.36 -8.57 -41.56 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -3.91 Total: -0.30 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -2.61 Total: -11.92 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.40 Total: -33.48 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.07 Total: -10.63 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.99 -8.57 -41.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299117461.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.445 kcal (2) G-P(sol) polarization free energy of solvation -32.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds