Wall clock time and date at job start Tue Mar 31 2020 06:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86798 * 120.00368 * 2 1 4 4 H 1.48499 * 109.47178 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47361 * 300.00187 * 3 2 1 6 6 H 1.48503 * 109.46705 * 60.00446 * 3 2 1 7 7 C 1.38802 * 119.99462 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99639 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00318 * 359.97438 * 7 2 1 10 10 C 1.81003 * 100.00187 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47327 * 180.02562 * 10 9 7 12 12 O 1.21294 * 119.99938 * 5.54618 * 11 10 9 13 13 N 1.34780 * 120.00246 * 185.54519 * 11 10 9 14 14 C 1.46927 * 120.54760 * 353.88414 * 13 11 10 15 15 C 1.53431 * 107.83448 * 224.52807 * 14 13 11 16 16 C 1.52837 * 108.85715 * 296.83522 * 15 14 13 17 17 C 1.50604 * 110.54495 * 51.32942 * 16 15 14 18 18 C 1.38523 * 118.89914 * 159.50382 * 17 16 15 19 19 C 1.38082 * 120.34220 * 179.79218 * 18 17 16 20 20 C 1.38533 * 120.12081 * 0.02919 * 19 18 17 21 21 F 1.35103 * 120.07137 * 180.02562 * 20 19 18 22 22 C 1.38254 * 119.85604 * 0.02562 * 20 19 18 23 23 C 1.38590 * 121.49432 * 339.41866 * 17 16 15 24 24 H 0.97003 * 119.99625 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.46931 * 59.99633 * 10 9 7 26 26 H 1.08999 * 109.46670 * 300.00204 * 10 9 7 27 27 H 1.09000 * 109.80196 * 344.13305 * 14 13 11 28 28 H 1.09002 * 109.79258 * 104.93020 * 14 13 11 29 29 H 1.09005 * 109.57215 * 56.57755 * 15 14 13 30 30 H 1.08997 * 109.57557 * 176.96117 * 15 14 13 31 31 H 1.09004 * 109.21968 * 291.07804 * 16 15 14 32 32 H 1.08991 * 109.24784 * 171.60847 * 16 15 14 33 33 H 1.07999 * 119.83201 * 359.81392 * 18 17 16 34 34 H 1.08001 * 119.93490 * 180.02562 * 19 18 17 35 35 H 1.07990 * 119.99190 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8917 2.3963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9872 -5.3028 -0.0012 12 8 0.7954 -5.5040 -0.1031 13 7 2.8387 -6.3414 0.1115 14 6 4.2913 -6.1206 0.1011 15 6 4.9207 -7.1777 -0.8157 16 6 4.6597 -8.5628 -0.2247 17 6 3.1960 -8.7389 0.0832 18 6 2.6886 -10.0214 0.2118 19 6 1.3520 -10.2172 0.4980 20 6 0.5087 -9.1299 0.6579 21 9 -0.7988 -9.3226 0.9383 22 6 1.0079 -7.8470 0.5298 23 6 2.3532 -7.6500 0.2409 24 1 -0.4850 0.8401 0.0004 25 1 3.1243 -3.7315 0.8894 26 1 3.1242 -3.7314 -0.8905 27 1 4.5105 -5.1234 -0.2803 28 1 4.6877 -6.2248 1.1111 29 1 4.4724 -7.1146 -1.8073 30 1 5.9947 -7.0065 -0.8869 31 1 5.2364 -8.6756 0.6934 32 1 4.9708 -9.3234 -0.9406 33 1 3.3417 -10.8725 0.0880 34 1 0.9634 -11.2200 0.5972 35 1 0.3526 -6.9978 0.6544 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299117461.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:18 Heat of formation + Delta-G solvation = -68.035972 kcal Electronic energy + Delta-G solvation = -20834.073819 eV Core-core repulsion = 17450.971017 eV Total energy + Delta-G solvation = -3383.102802 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.92972 -42.18813 -39.65547 -37.44213 -34.62675 -34.53579 -32.41519 -30.99453 -30.03286 -27.70881 -26.59926 -24.50467 -24.08914 -21.94432 -20.59145 -19.69679 -18.76337 -18.43648 -17.25855 -17.06258 -16.90476 -16.61785 -16.59370 -16.56067 -15.91402 -15.37175 -14.93055 -14.65984 -14.49235 -14.36811 -14.29130 -13.92516 -13.74871 -13.36104 -13.18759 -12.93070 -12.70658 -12.60585 -12.19244 -12.04859 -11.79974 -11.74190 -11.18865 -11.17881 -10.64360 -10.31679 -9.66347 -9.00038 -8.71671 -8.37047 -6.16538 0.05613 0.19368 1.13849 1.39165 1.41424 1.42032 1.55340 1.84695 2.24060 2.59685 2.98025 3.07548 3.30653 3.52914 3.72653 3.79220 3.95129 4.04245 4.12863 4.14086 4.18595 4.32570 4.37765 4.52171 4.69696 4.75164 4.96381 4.99861 5.07738 5.16230 5.21357 5.30716 5.36136 5.40369 5.46595 5.98736 6.11299 6.18086 6.86927 7.04495 8.72553 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.024169 B = 0.003850 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.212763 B = 7271.060724 C = 8354.607358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.013 3.987 3 Si 1.001 2.999 4 H -0.253 1.253 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.087 0.913 9 S -0.152 6.152 10 C -0.121 4.121 11 C 0.528 3.472 12 O -0.536 6.536 13 N -0.551 5.551 14 C 0.086 3.914 15 C -0.131 4.131 16 C -0.073 4.073 17 C -0.123 4.123 18 C -0.059 4.059 19 C -0.171 4.171 20 C 0.088 3.912 21 F -0.153 7.153 22 C -0.224 4.224 23 C 0.169 3.831 24 H 0.271 0.729 25 H 0.115 0.885 26 H 0.117 0.883 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.060 0.940 30 H 0.123 0.877 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.181 0.819 34 H 0.160 0.840 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.216 -20.330 -0.018 26.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.822 3.178 4 H -0.177 1.177 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.691 4.691 8 H 0.105 0.895 9 S 0.075 5.925 10 C -0.272 4.272 11 C 0.318 3.682 12 O -0.413 6.413 13 N -0.274 5.274 14 C -0.034 4.034 15 C -0.169 4.169 16 C -0.109 4.109 17 C -0.126 4.126 18 C -0.077 4.077 19 C -0.190 4.190 20 C 0.069 3.931 21 F -0.132 7.132 22 C -0.245 4.245 23 C 0.074 3.926 24 H 0.080 0.920 25 H 0.133 0.867 26 H 0.135 0.865 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.078 0.922 30 H 0.142 0.858 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.199 0.801 34 H 0.177 0.823 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 14.305 -20.433 -0.075 24.943 hybrid contribution 0.339 1.569 0.149 1.612 sum 14.644 -18.864 0.075 23.881 Atomic orbital electron populations 1.70197 1.08098 1.28614 1.48002 1.26155 0.95939 1.03415 0.93634 0.84877 0.78752 0.76146 0.78003 1.17652 1.20039 1.20041 1.23224 0.95450 0.91548 1.58922 0.89468 1.85691 1.10239 0.99494 1.97074 1.23375 1.03805 0.92856 1.07141 1.20519 0.85798 0.86906 0.74969 1.90545 1.17796 1.84936 1.48055 1.45849 1.09200 1.03601 1.68789 1.22511 0.75394 1.02429 1.03099 1.21928 1.03320 0.93592 0.98051 1.20545 0.88887 0.98217 1.03290 1.20026 0.97825 0.91057 1.03665 1.21214 0.94001 0.96784 0.95745 1.21378 0.94447 0.98280 1.04897 1.17838 0.78390 0.94380 1.02524 1.91448 1.34413 1.95950 1.91379 1.21991 0.97590 0.98063 1.06858 1.17626 0.91944 0.84670 0.98320 0.91990 0.86669 0.86474 0.87834 0.88379 0.92156 0.85847 0.87928 0.87260 0.80126 0.82258 0.84302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.96 13.22 21.65 0.29 -55.68 16 2 C 0.01 0.75 5.49 84.86 0.47 1.21 16 3 Si 1.00 42.95 29.55 68.60 2.03 44.98 16 4 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.54 -30.51 9.50 67.95 0.65 -29.87 16 8 H 0.09 4.48 7.80 -2.91 -0.02 4.46 16 9 S -0.15 -8.42 20.58 -56.49 -1.16 -9.58 16 10 C -0.12 -4.74 4.57 71.23 0.33 -4.41 16 11 C 0.53 20.52 7.57 87.66 0.66 21.18 16 12 O -0.54 -25.74 12.54 -3.07 -0.04 -25.78 16 13 N -0.55 -16.03 2.97 -629.35 -1.87 -17.90 16 14 C 0.09 1.53 6.16 86.44 0.53 2.06 16 15 C -0.13 -1.53 6.11 30.68 0.19 -1.35 16 16 C -0.07 -0.74 5.77 29.76 0.17 -0.57 16 17 C -0.12 -2.36 5.76 -19.74 -0.11 -2.47 16 18 C -0.06 -0.93 9.66 22.30 0.22 -0.71 16 19 C -0.17 -3.54 10.02 22.30 0.22 -3.31 16 20 C 0.09 2.69 7.30 22.34 0.16 2.85 16 21 F -0.15 -5.09 17.27 44.97 0.78 -4.31 16 22 C -0.22 -7.92 8.85 22.46 0.20 -7.72 16 23 C 0.17 4.92 6.31 38.07 0.24 5.16 16 24 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 25 H 0.12 3.98 8.06 -2.40 -0.02 3.96 16 26 H 0.12 4.05 7.60 -2.40 -0.02 4.03 16 27 H 0.10 1.73 6.27 -2.39 -0.01 1.72 16 28 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.11 0.61 8.12 -2.39 -0.02 0.59 16 33 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 34 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 35 H 0.14 6.10 4.96 -21.94 -0.11 5.99 16 Total: -1.00 -79.69 310.36 4.96 -74.73 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 1.02 Total: 11.49 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 3.92 Total: -17.95 kcal Atomic # 7 Polarization: -71.99 SS G_CDS: -1.58 Total: -73.58 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.04 Total: -25.78 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.78 Total: -4.31 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -79.69 4.96 -74.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299117461.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.696 kcal (2) G-P(sol) polarization free energy of solvation -79.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds