Wall clock time and date at job start Tue Mar 31 2020 07:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 119.99936 * 2 1 4 4 H 1.48503 * 109.47187 * 240.00222 * 3 2 1 5 5 H 1.48497 * 109.46938 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47103 * 120.00109 * 3 2 1 7 7 C 1.37880 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99798 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00192 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.46906 * 110.99827 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47011 * 35.00178 * 11 10 9 13 13 C 1.50698 * 109.46990 * 155.00323 * 11 10 9 14 14 C 1.38415 * 120.02708 * 224.99848 * 13 11 10 15 15 F 1.35099 * 120.00946 * 359.97438 * 14 13 11 16 16 C 1.38474 * 119.97981 * 179.97438 * 14 13 11 17 17 C 1.38210 * 120.02023 * 0.28104 * 16 14 13 18 18 C 1.38201 * 120.05118 * 359.44081 * 17 16 14 19 19 C 1.38420 * 120.02535 * 44.97355 * 13 11 10 20 20 F 1.35097 * 120.01373 * 0.02562 * 19 13 11 21 21 C 1.52999 * 109.46954 * 274.99797 * 11 10 9 22 22 F 1.39899 * 109.47411 * 300.00490 * 21 11 10 23 23 F 1.39904 * 109.47042 * 60.00509 * 21 11 10 24 24 F 1.39896 * 109.47239 * 179.97438 * 21 11 10 25 25 H 0.96996 * 120.00451 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46789 * 60.00640 * 9 7 2 27 27 H 1.08994 * 109.47234 * 300.00196 * 9 7 2 28 28 H 1.00898 * 111.00429 * 303.95393 * 10 9 7 29 29 H 1.08002 * 119.98641 * 179.97438 * 16 14 13 30 30 H 1.08000 * 119.96986 * 179.70463 * 17 16 14 31 31 H 1.08002 * 119.98829 * 180.25980 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5052 -4.9071 -0.0011 12 1 0.5923 -4.8250 -0.5909 13 6 2.3979 -5.9624 -0.6015 14 6 1.8878 -6.8568 -1.5266 15 9 0.5890 -6.7844 -1.8913 16 6 2.7091 -7.8257 -2.0780 17 6 4.0364 -7.9036 -1.7007 18 6 4.5483 -7.0075 -0.7815 19 6 3.7289 -6.0377 -0.2288 20 9 4.2282 -5.1654 0.6740 21 6 1.1512 -5.2959 1.4356 22 9 2.3230 -5.4012 2.1926 23 9 0.3224 -4.3162 1.9931 24 9 0.4837 -6.5253 1.4351 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 2.8405 -3.5487 -0.7819 29 1 2.3110 -8.5239 -2.7995 30 1 4.6751 -8.6626 -2.1278 31 1 5.5867 -7.0666 -0.4906 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299176347.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:30 Heat of formation + Delta-G solvation = -211.972313 kcal Electronic energy + Delta-G solvation = -24778.771153 eV Core-core repulsion = 20281.356887 eV Total energy + Delta-G solvation = -4497.414266 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.069 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.59978 -49.10667 -48.70807 -47.11018 -46.95077 -39.09471 -36.09068 -32.98446 -31.17111 -30.41831 -28.16659 -25.85341 -23.75711 -23.03296 -21.81925 -21.15234 -18.32602 -18.15785 -17.91601 -17.38309 -16.89237 -16.61372 -15.91329 -15.57784 -15.55674 -15.17161 -14.71907 -14.44912 -14.38817 -13.93288 -13.82663 -13.57230 -13.45511 -13.16340 -13.13893 -13.06351 -12.77527 -12.42043 -12.15770 -11.99726 -11.64715 -11.45105 -11.07451 -10.77679 -10.71350 -10.03833 -9.33310 -9.07580 -8.84338 -8.55484 -7.73730 -6.07208 -4.09964 0.72862 0.85332 3.06865 3.31149 3.32624 3.36549 3.39922 3.78529 4.01086 4.16797 4.30254 4.38051 4.48072 4.57358 4.70163 4.86970 4.96076 5.28374 5.31523 5.44398 5.56382 5.72778 5.79688 5.88982 5.96262 6.60104 6.94543 7.20399 7.61239 7.98613 8.06115 8.35329 8.96307 9.54290 11.03880 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.018571 B = 0.005509 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.402494 B = 5081.466669 C = 5398.393660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.064 0.936 9 C 0.181 3.819 10 N -0.662 5.662 11 C 0.088 3.912 12 H 0.095 0.905 13 C -0.183 4.183 14 C 0.152 3.848 15 F -0.125 7.125 16 C -0.174 4.174 17 C -0.053 4.053 18 C -0.175 4.175 19 C 0.170 3.830 20 F -0.099 7.099 21 C 0.461 3.539 22 F -0.172 7.172 23 F -0.169 7.169 24 F -0.193 7.193 25 H 0.263 0.737 26 H -0.006 1.006 27 H 0.048 0.952 28 H 0.347 0.653 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.388 -17.353 -3.598 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.555 4.555 8 H 0.082 0.918 9 C 0.056 3.944 10 N -0.295 5.295 11 C -0.025 4.025 12 H 0.112 0.888 13 C -0.185 4.185 14 C 0.132 3.868 15 F -0.103 7.103 16 C -0.193 4.193 17 C -0.071 4.071 18 C -0.194 4.194 19 C 0.150 3.850 20 F -0.077 7.077 21 C 0.405 3.595 22 F -0.154 7.154 23 F -0.150 7.150 24 F -0.174 7.174 25 H 0.073 0.927 26 H 0.012 0.988 27 H 0.066 0.934 28 H 0.167 0.833 29 H 0.161 0.839 30 H 0.161 0.839 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.263 -17.143 -2.854 18.473 hybrid contribution -0.241 1.034 -0.561 1.201 sum 6.021 -16.109 -3.415 17.534 Atomic orbital electron populations 1.69947 1.06079 1.27108 1.50220 1.24965 0.94898 0.99386 0.95119 0.86491 0.79381 0.82431 0.78691 1.20255 1.21284 1.20053 1.21011 0.93513 0.89734 1.51274 0.91768 1.19983 0.90567 0.86685 0.97208 1.60722 1.20654 0.98484 1.49671 1.21195 0.98662 0.92476 0.90197 0.88771 1.19754 0.94977 1.00751 1.03062 1.17204 0.78963 0.95528 0.95119 1.91544 1.33380 1.95467 1.89933 1.21130 0.94419 1.00066 1.03677 1.20874 0.94239 0.97284 0.94739 1.21261 1.01138 0.96541 1.00449 1.17233 0.90312 0.88779 0.88694 1.91685 1.86769 1.66160 1.63078 1.20512 0.74716 0.73949 0.90284 1.93171 1.47898 1.95758 1.78545 1.93205 1.72617 1.61993 1.87176 1.93130 1.81565 1.45656 1.97086 0.92699 0.98825 0.93378 0.83287 0.83857 0.83868 0.83730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.54 9.32 -34.44 -0.32 -14.86 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.18 4.70 5.15 -4.98 -0.03 4.67 16 10 N -0.66 -14.14 4.93 -109.22 -0.54 -14.68 16 11 C 0.09 1.62 2.21 -68.86 -0.15 1.47 16 12 H 0.09 1.77 6.93 -51.93 -0.36 1.41 16 13 C -0.18 -2.80 4.39 -104.49 -0.46 -3.26 16 14 C 0.15 2.02 7.24 -39.43 -0.29 1.74 16 15 F -0.12 -1.79 16.27 2.25 0.04 -1.75 16 16 C -0.17 -1.70 10.03 -39.50 -0.40 -2.09 16 17 C -0.05 -0.44 10.04 -39.61 -0.40 -0.84 16 18 C -0.17 -1.80 10.02 -39.51 -0.40 -2.20 16 19 C 0.17 2.42 6.41 -39.43 -0.25 2.16 16 20 F -0.10 -1.66 13.87 2.25 0.03 -1.63 16 21 C 0.46 8.84 2.82 37.16 0.10 8.94 16 22 F -0.17 -3.34 14.66 2.25 0.03 -3.31 16 23 F -0.17 -3.64 15.04 2.25 0.03 -3.61 16 24 F -0.19 -3.38 17.02 2.25 0.04 -3.34 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H -0.01 -0.16 8.06 -51.93 -0.42 -0.58 16 27 H 0.05 1.35 6.02 -51.93 -0.31 1.04 16 28 H 0.35 7.00 8.05 -39.29 -0.32 6.68 16 29 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 30 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 31 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 288.38 15.07 4.35 4.35 Total: -1.00 -30.81 288.38 -5.20 -36.02 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -2.22 Total: -0.11 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -2.68 Total: -2.70 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.20 Total: -40.59 kcal Atomic # 9 Polarization: -13.81 SS G_CDS: 0.17 Total: -13.63 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.81 -5.20 -36.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299176347.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.956 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds