Wall clock time and date at job start Tue Mar 31 2020 07:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 119.99936 * 2 1 4 4 H 1.48503 * 109.47187 * 240.00222 * 3 2 1 5 5 H 1.48497 * 109.46938 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47103 * 120.00109 * 3 2 1 7 7 C 1.37880 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99798 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00192 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.46906 * 110.99827 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47011 * 35.00178 * 11 10 9 13 13 C 1.50698 * 109.46990 * 155.00323 * 11 10 9 14 14 C 1.38415 * 120.02708 * 224.99848 * 13 11 10 15 15 F 1.35099 * 120.00946 * 359.97438 * 14 13 11 16 16 C 1.38474 * 119.97981 * 179.97438 * 14 13 11 17 17 C 1.38210 * 120.02023 * 0.28104 * 16 14 13 18 18 C 1.38201 * 120.05118 * 359.44081 * 17 16 14 19 19 C 1.38420 * 120.02535 * 44.97355 * 13 11 10 20 20 F 1.35097 * 120.01373 * 0.02562 * 19 13 11 21 21 C 1.52999 * 109.46954 * 274.99797 * 11 10 9 22 22 F 1.39899 * 109.47411 * 300.00490 * 21 11 10 23 23 F 1.39904 * 109.47042 * 60.00509 * 21 11 10 24 24 F 1.39896 * 109.47239 * 179.97438 * 21 11 10 25 25 H 0.96996 * 120.00451 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46789 * 60.00640 * 9 7 2 27 27 H 1.08994 * 109.47234 * 300.00196 * 9 7 2 28 28 H 1.00898 * 111.00429 * 303.95393 * 10 9 7 29 29 H 1.08002 * 119.98641 * 179.97438 * 16 14 13 30 30 H 1.08000 * 119.96986 * 179.70463 * 17 16 14 31 31 H 1.08002 * 119.98829 * 180.25980 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5052 -4.9071 -0.0011 12 1 0.5923 -4.8250 -0.5909 13 6 2.3979 -5.9624 -0.6015 14 6 1.8878 -6.8568 -1.5266 15 9 0.5890 -6.7844 -1.8913 16 6 2.7091 -7.8257 -2.0780 17 6 4.0364 -7.9036 -1.7007 18 6 4.5483 -7.0075 -0.7815 19 6 3.7289 -6.0377 -0.2288 20 9 4.2282 -5.1654 0.6740 21 6 1.1512 -5.2959 1.4356 22 9 2.3230 -5.4012 2.1926 23 9 0.3224 -4.3162 1.9931 24 9 0.4837 -6.5253 1.4351 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 2.8405 -3.5487 -0.7819 29 1 2.3110 -8.5239 -2.7995 30 1 4.6751 -8.6626 -2.1278 31 1 5.5867 -7.0666 -0.4906 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299176347.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:30 Heat of formation + Delta-G solvation = -231.194380 kcal Electronic energy + Delta-G solvation = -24779.604685 eV Core-core repulsion = 20281.356887 eV Total energy + Delta-G solvation = -4498.247798 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.069 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.16125 -50.14731 -49.84526 -48.68488 -48.55306 -40.07500 -37.65533 -34.96290 -32.65898 -31.29502 -29.66189 -27.78468 -25.08140 -24.15856 -23.49773 -22.53046 -19.70474 -19.67403 -19.13397 -18.76028 -18.57626 -18.07232 -17.00048 -16.87067 -16.61193 -16.55327 -16.29815 -15.98264 -15.51525 -15.45242 -15.36935 -15.11905 -15.01044 -14.78653 -14.75440 -14.69665 -14.20505 -13.70345 -13.45419 -13.30828 -12.99074 -12.81055 -12.69636 -12.62532 -12.31943 -12.00414 -11.40172 -10.70154 -10.11142 -9.74918 -9.57212 -8.25417 -6.36961 -0.20305 -0.03208 1.40293 1.44371 1.52209 1.65666 2.30739 2.37753 2.62478 2.70616 2.87421 2.94206 3.08943 3.36152 3.40409 3.56897 3.76492 3.86820 4.08772 4.21776 4.69538 4.78677 4.92732 4.99294 5.05274 5.11994 5.18073 5.49072 5.74402 5.87206 6.14984 6.34868 6.77619 7.32716 8.86266 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.018571 B = 0.005509 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.402494 B = 5081.466669 C = 5398.393660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.976 3.024 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.196 3.804 10 N -0.659 5.659 11 C 0.092 3.908 12 H 0.084 0.916 13 C -0.209 4.209 14 C 0.131 3.869 15 F -0.139 7.139 16 C -0.158 4.158 17 C -0.030 4.030 18 C -0.162 4.162 19 C 0.141 3.859 20 F -0.123 7.123 21 C 0.459 3.541 22 F -0.173 7.173 23 F -0.188 7.188 24 F -0.182 7.182 25 H 0.266 0.734 26 H -0.030 1.030 27 H 0.021 0.979 28 H 0.353 0.647 29 H 0.177 0.823 30 H 0.195 0.805 31 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.715 -19.006 -4.919 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.070 3.930 10 N -0.292 5.292 11 C -0.021 4.021 12 H 0.101 0.899 13 C -0.211 4.211 14 C 0.111 3.889 15 F -0.117 7.117 16 C -0.176 4.176 17 C -0.047 4.047 18 C -0.180 4.180 19 C 0.121 3.879 20 F -0.102 7.102 21 C 0.404 3.596 22 F -0.154 7.154 23 F -0.170 7.170 24 F -0.163 7.163 25 H 0.075 0.925 26 H -0.012 1.012 27 H 0.039 0.961 28 H 0.174 0.826 29 H 0.194 0.806 30 H 0.212 0.788 31 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 8.603 -18.824 -4.180 21.115 hybrid contribution -0.947 1.376 -0.181 1.680 sum 7.657 -17.448 -4.362 19.547 Atomic orbital electron populations 1.70082 1.07808 1.28226 1.50984 1.25938 0.95791 1.03366 0.94384 0.85346 0.78074 0.77458 0.79180 1.18850 1.20718 1.19492 1.21383 0.93835 0.90923 1.51381 0.91513 1.19591 0.90606 0.88094 0.94750 1.60472 1.19876 0.98739 1.50117 1.21087 0.98971 0.92289 0.89759 0.89852 1.19604 0.95229 1.01189 1.05060 1.17548 0.79023 0.96638 0.95720 1.91508 1.34449 1.95660 1.90092 1.21598 0.94521 0.98646 1.02838 1.21492 0.93905 0.96755 0.92577 1.21667 1.01911 0.94926 0.99532 1.17623 0.90510 0.90115 0.89631 1.91618 1.86975 1.67335 1.64229 1.20643 0.74447 0.73959 0.90570 1.93161 1.47878 1.95760 1.78619 1.93165 1.73253 1.62969 1.87573 1.93137 1.81336 1.44797 1.97052 0.92487 1.01185 0.96075 0.82582 0.80568 0.78762 0.80962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 2 C 0.00 0.23 5.46 84.66 0.46 0.69 16 3 Si 0.98 44.75 29.54 68.60 2.03 46.78 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.54 -31.00 9.32 25.60 0.24 -30.76 16 8 H 0.07 3.73 7.81 -2.91 -0.02 3.70 16 9 C 0.20 10.72 5.15 85.56 0.44 11.16 16 10 N -0.66 -29.39 4.93 -499.47 -2.46 -31.85 16 11 C 0.09 3.55 2.21 44.17 0.10 3.65 16 12 H 0.08 3.36 6.93 -2.39 -0.02 3.35 16 13 C -0.21 -6.37 4.39 -19.78 -0.09 -6.46 16 14 C 0.13 3.31 7.24 22.37 0.16 3.48 16 15 F -0.14 -3.97 16.27 44.97 0.73 -3.23 16 16 C -0.16 -2.44 10.03 22.32 0.22 -2.22 16 17 C -0.03 -0.33 10.04 22.25 0.22 -0.11 16 18 C -0.16 -2.74 10.02 22.32 0.22 -2.51 16 19 C 0.14 3.87 6.41 22.37 0.14 4.01 16 20 F -0.12 -4.15 13.87 44.97 0.62 -3.52 16 21 C 0.46 18.33 2.82 71.98 0.20 18.53 16 22 F -0.17 -6.90 14.66 44.97 0.66 -6.24 16 23 F -0.19 -8.60 15.04 44.97 0.68 -7.92 16 24 F -0.18 -6.51 17.02 44.97 0.77 -5.75 16 25 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 26 H -0.03 -1.71 8.06 -2.39 -0.02 -1.73 16 27 H 0.02 1.27 6.02 -2.39 -0.01 1.25 16 28 H 0.35 14.81 8.05 -89.70 -0.72 14.08 16 29 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 30 H 0.20 0.33 8.06 -2.91 -0.02 0.31 16 31 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -70.10 288.38 6.12 -63.98 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: 0.48 Total: 4.94 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 2.33 Total: -0.54 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -2.18 Total: -88.49 kcal Atomic # 9 Polarization: -30.12 SS G_CDS: 3.46 Total: -26.66 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -70.10 6.12 -63.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299176347.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.215 kcal (2) G-P(sol) polarization free energy of solvation -70.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds