Wall clock time and date at job start Tue Mar 31 2020 07:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47157 * 300.00517 * 3 2 1 6 6 H 1.48502 * 109.47214 * 60.00025 * 3 2 1 7 7 C 1.37876 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00116 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46990 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99573 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47515 * 325.00070 * 11 10 9 13 13 C 1.50699 * 109.46726 * 204.99752 * 11 10 9 14 14 C 1.38420 * 120.02783 * 314.72272 * 13 11 10 15 15 F 1.35102 * 120.01238 * 0.02562 * 14 13 11 16 16 C 1.38479 * 119.97479 * 179.74527 * 14 13 11 17 17 C 1.38205 * 120.02528 * 0.53387 * 16 14 13 18 18 C 1.38211 * 120.04832 * 359.74597 * 17 16 14 19 19 C 1.38420 * 120.02463 * 135.00469 * 13 11 10 20 20 F 1.35097 * 120.01201 * 359.97438 * 19 13 11 21 21 C 1.52999 * 109.47197 * 85.00442 * 11 10 9 22 22 F 1.39897 * 109.47595 * 59.99314 * 21 11 10 23 23 F 1.39898 * 109.47563 * 180.02562 * 21 11 10 24 24 F 1.39906 * 109.46729 * 299.99538 * 21 11 10 25 25 H 0.96998 * 120.00296 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47064 * 60.00368 * 9 7 2 27 27 H 1.09000 * 109.47099 * 300.00095 * 9 7 2 28 28 H 1.00896 * 111.00309 * 56.04484 * 10 9 7 29 29 H 1.07998 * 119.98774 * 180.27672 * 16 14 13 30 30 H 1.07992 * 119.97803 * 179.76448 * 17 16 14 31 31 H 1.08001 * 119.98672 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9070 -0.0011 12 1 0.5920 -4.8253 0.5880 13 6 2.3977 -5.9626 0.5993 14 6 3.7273 -6.0417 0.2227 15 9 4.2260 -5.1721 -0.6831 16 6 4.5476 -7.0088 0.7791 17 6 4.0365 -7.9018 1.7017 18 6 2.7076 -7.8274 2.0741 19 6 1.8868 -6.8576 1.5234 20 9 0.5880 -6.7849 1.8880 21 6 1.1523 -5.2951 -1.4384 22 9 2.3246 -5.3999 -2.1946 23 9 0.4848 -6.5245 -1.4390 24 9 0.3239 -4.3150 -1.9958 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8406 -3.5487 0.7808 29 1 5.5862 -7.0678 0.4887 30 1 4.6760 -8.6581 2.1323 31 1 2.3093 -8.5255 2.7956 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299176351.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:32 Heat of formation + Delta-G solvation = -231.363931 kcal Electronic energy + Delta-G solvation = -24780.454951 eV Core-core repulsion = 20282.199801 eV Total energy + Delta-G solvation = -4498.255150 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.069 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -51.16092 -50.14786 -49.84420 -48.68434 -48.55225 -40.07442 -37.65486 -34.96473 -32.65973 -31.29498 -29.66221 -27.78669 -25.08237 -24.15872 -23.50076 -22.52936 -19.70476 -19.67361 -19.13325 -18.76391 -18.58103 -18.07162 -17.00197 -16.87324 -16.61059 -16.55045 -16.29815 -15.98356 -15.51469 -15.45213 -15.36820 -15.11749 -15.00784 -14.78658 -14.75283 -14.69920 -14.21835 -13.70361 -13.45609 -13.31386 -12.98286 -12.82208 -12.67719 -12.64671 -12.31133 -12.01589 -11.36418 -10.71806 -10.11146 -9.74918 -9.57060 -8.25973 -6.37251 -0.20308 -0.03195 1.39914 1.41479 1.54999 1.65709 2.30716 2.37585 2.62447 2.70641 2.87415 2.94216 3.08610 3.36185 3.40410 3.56922 3.76416 3.86837 4.08804 4.21791 4.69562 4.78703 4.92731 4.99305 5.05305 5.11897 5.18085 5.49410 5.74414 5.87195 6.14762 6.34948 6.77892 7.32573 8.86178 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.018571 B = 0.005507 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.349514 B = 5082.759454 C = 5397.983487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.976 3.024 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.534 4.534 8 H 0.067 0.933 9 C 0.196 3.804 10 N -0.660 5.660 11 C 0.092 3.908 12 H 0.084 0.916 13 C -0.208 4.208 14 C 0.141 3.859 15 F -0.124 7.124 16 C -0.162 4.162 17 C -0.030 4.030 18 C -0.158 4.158 19 C 0.131 3.869 20 F -0.139 7.139 21 C 0.459 3.541 22 F -0.173 7.173 23 F -0.182 7.182 24 F -0.188 7.188 25 H 0.266 0.734 26 H 0.021 0.979 27 H -0.029 1.029 28 H 0.354 0.646 29 H 0.173 0.827 30 H 0.195 0.805 31 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.720 -19.027 4.909 21.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.201 1.201 7 C -0.573 4.573 8 H 0.085 0.915 9 C 0.069 3.931 10 N -0.292 5.292 11 C -0.021 4.021 12 H 0.101 0.899 13 C -0.211 4.211 14 C 0.121 3.879 15 F -0.102 7.102 16 C -0.180 4.180 17 C -0.047 4.047 18 C -0.176 4.176 19 C 0.111 3.889 20 F -0.117 7.117 21 C 0.404 3.596 22 F -0.154 7.154 23 F -0.163 7.163 24 F -0.170 7.170 25 H 0.075 0.925 26 H 0.039 0.961 27 H -0.012 1.012 28 H 0.174 0.826 29 H 0.190 0.810 30 H 0.212 0.788 31 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 8.617 -18.849 4.170 21.140 hybrid contribution -0.969 1.384 0.182 1.699 sum 7.648 -17.464 4.352 19.556 Atomic orbital electron populations 1.70098 1.07808 1.28091 1.51165 1.25940 0.95793 1.03383 0.94425 0.85240 0.78906 0.78101 0.77771 1.18598 1.20520 1.20070 1.21438 0.93831 0.90899 1.51097 0.91523 1.19604 0.90617 0.88117 0.94765 1.60452 1.19896 0.98741 1.50138 1.21084 0.98971 0.92282 0.89749 0.89850 1.19604 0.95268 1.01169 1.05036 1.17625 0.90543 0.90168 0.89550 1.91619 1.87001 1.67503 1.64041 1.21667 1.01893 0.95029 0.99444 1.21491 0.93899 0.96730 0.92604 1.21597 0.94504 0.98649 1.02853 1.17547 0.79020 0.96592 0.95767 1.91507 1.34447 1.95657 1.90096 1.20646 0.74445 0.73953 0.90585 1.93161 1.47830 1.95762 1.78656 1.93138 1.81336 1.44797 1.97056 1.93166 1.73276 1.62946 1.87574 0.92498 0.96051 1.01173 0.82566 0.80967 0.78763 0.80569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 2 C 0.00 0.18 5.46 84.65 0.46 0.65 16 3 Si 0.98 44.79 29.54 68.60 2.03 46.82 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.53 -30.84 9.32 25.60 0.24 -30.60 16 8 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 9 C 0.20 10.68 5.15 85.56 0.44 11.12 16 10 N -0.66 -29.39 4.94 -499.45 -2.47 -31.85 16 11 C 0.09 3.55 2.21 44.17 0.10 3.65 16 12 H 0.08 3.36 6.93 -2.39 -0.02 3.34 16 13 C -0.21 -6.37 4.39 -19.78 -0.09 -6.45 16 14 C 0.14 3.87 6.41 22.37 0.14 4.01 16 15 F -0.12 -4.15 13.86 44.97 0.62 -3.53 16 16 C -0.16 -2.74 10.03 22.32 0.22 -2.51 16 17 C -0.03 -0.33 10.04 22.26 0.22 -0.11 16 18 C -0.16 -2.44 10.02 22.32 0.22 -2.21 16 19 C 0.13 3.31 7.24 22.37 0.16 3.48 16 20 F -0.14 -3.96 16.27 44.97 0.73 -3.23 16 21 C 0.46 18.31 2.82 71.98 0.20 18.52 16 22 F -0.17 -6.89 14.63 44.97 0.66 -6.23 16 23 F -0.18 -6.51 17.03 44.97 0.77 -5.75 16 24 F -0.19 -8.59 15.04 44.97 0.68 -7.92 16 25 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 26 H 0.02 1.28 6.03 -2.39 -0.01 1.26 16 27 H -0.03 -1.70 8.06 -2.39 -0.02 -1.72 16 28 H 0.35 14.81 8.07 -89.70 -0.72 14.08 16 29 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 30 H 0.20 0.33 8.06 -2.91 -0.02 0.31 16 31 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -70.17 288.37 6.11 -64.05 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: 0.48 Total: 4.75 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 2.33 Total: -0.47 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -2.18 Total: -88.49 kcal Atomic # 9 Polarization: -30.11 SS G_CDS: 3.45 Total: -26.65 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -70.17 6.11 -64.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299176351.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.310 kcal (2) G-P(sol) polarization free energy of solvation -70.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds