Wall clock time and date at job start Tue Mar 31 2020 07:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47249 * 42.07154 * 3 2 1 5 5 C 1.36907 * 119.99806 * 264.10643 * 4 3 2 6 6 H 1.07993 * 120.00477 * 205.25504 * 5 4 3 7 7 C 1.39025 * 119.99879 * 25.25650 * 5 4 3 8 8 N 1.31386 * 119.99726 * 9.20848 * 7 5 4 9 9 Si 1.86792 * 120.00088 * 189.20666 * 7 5 4 10 10 H 1.48504 * 109.47241 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47236 * 120.00080 * 9 7 5 12 12 H 1.48500 * 109.47203 * 240.00155 * 9 7 5 13 13 C 1.34776 * 120.00043 * 84.11082 * 4 3 2 14 14 O 1.21620 * 120.00210 * 5.43487 * 13 4 3 15 15 C 1.47430 * 119.99664 * 185.43592 * 13 4 3 16 16 C 1.39768 * 120.19838 * 40.79816 * 15 13 4 17 17 C 1.37771 * 119.90248 * 180.02562 * 16 15 13 18 18 C 1.38562 * 120.30559 * 359.97363 * 17 16 15 19 19 C 1.38079 * 120.40057 * 0.02562 * 18 17 16 20 20 C 1.38681 * 120.09185 * 0.02562 * 19 18 17 21 21 O 1.35656 * 120.15576 * 180.02562 * 20 19 18 22 22 C 1.42899 * 116.99905 * 359.95823 * 21 20 19 23 23 F 1.39900 * 109.46956 * 299.99664 * 22 21 20 24 24 F 1.39899 * 109.47664 * 59.99726 * 22 21 20 25 25 H 4.40635 * 5.51388 * 179.97438 * 4 1 2 26 26 H 1.09004 * 109.47565 * 282.06415 * 3 2 1 27 27 H 1.09005 * 109.46691 * 162.06965 * 3 2 1 28 28 H 0.97000 * 119.99585 * 179.97438 * 8 7 5 29 29 H 1.07997 * 120.04709 * 359.97438 * 16 15 13 30 30 H 1.07993 * 119.84831 * 179.97438 * 17 16 15 31 31 H 1.08003 * 119.80235 * 179.74641 * 18 17 16 32 32 H 1.08002 * 119.95286 * 180.02562 * 19 18 17 33 33 H 1.09003 * 109.47251 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0244 -0.9255 5 6 3.4783 -2.2635 -0.4552 6 1 4.1913 -2.8678 -0.9962 7 6 2.9092 -2.7437 0.7188 8 7 1.9137 -2.0950 1.2794 9 14 3.5598 -4.3112 1.4989 10 1 4.6760 -4.8462 0.6784 11 1 4.0507 -4.0155 2.8689 12 1 2.4704 -5.3179 1.5700 13 6 3.2464 -0.7477 -2.2398 14 8 3.0365 0.3801 -2.6438 15 6 3.6230 -1.8121 -3.1878 16 6 3.0879 -3.0962 -3.0519 17 6 3.4444 -4.0864 -3.9409 18 6 4.3313 -3.8156 -4.9706 19 6 4.8674 -2.5515 -5.1166 20 6 4.5208 -1.5426 -4.2305 21 8 5.0463 -0.3001 -4.3730 22 6 5.9530 -0.1000 -5.4592 23 9 7.0490 -0.9575 -5.3158 24 9 5.3018 -0.3735 -6.6668 25 1 -1.0498 -0.0003 -0.0001 26 1 3.0095 -0.2140 1.0050 27 1 3.0088 0.9786 -0.3164 28 1 1.5164 -2.4303 2.0984 29 1 2.3967 -3.3119 -2.2507 30 1 3.0308 -5.0784 -3.8349 31 1 4.6083 -4.5990 -5.6604 32 1 5.5577 -2.3483 -5.9220 33 1 6.2978 0.9341 -5.4589 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000311286614.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:16 Heat of formation + Delta-G solvation = -94.496999 kcal Electronic energy + Delta-G solvation = -23868.676218 eV Core-core repulsion = 19918.212803 eV Total energy + Delta-G solvation = -3950.463414 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.081 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.31023 -48.29323 -41.41564 -39.91103 -38.24097 -36.97479 -33.82506 -33.39812 -31.99394 -31.20421 -28.38128 -27.07842 -26.67224 -24.30794 -23.26772 -21.41261 -20.23511 -19.55508 -19.02537 -18.88241 -18.50774 -17.97737 -17.04291 -16.55365 -16.36309 -16.02762 -15.79172 -15.53660 -15.30331 -14.92072 -14.89342 -14.63662 -14.48342 -14.05797 -13.88176 -13.81127 -13.44171 -13.38420 -12.93039 -12.82812 -12.61302 -12.47651 -12.09421 -12.00829 -11.25696 -11.17661 -10.59229 -10.42871 -9.87627 -9.80929 -9.38078 -8.23240 -5.96536 0.07796 0.38280 1.43188 1.49241 1.61103 1.69818 1.93766 2.11097 2.33688 2.44415 2.50795 2.77361 3.09050 3.20372 3.50388 3.71822 3.87936 3.92088 3.94998 4.24216 4.32398 4.46039 4.59833 4.73857 4.92085 5.02039 5.18966 5.37297 5.40918 5.43914 5.54087 5.71923 5.77593 6.11240 6.40615 7.09126 7.15858 7.48429 7.90477 8.73800 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.017247 B = 0.005959 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.102381 B = 4697.940564 C = 5517.517309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.139 4.139 3 C 0.245 3.755 4 N -0.440 5.440 5 C -0.349 4.349 6 H 0.102 0.898 7 C 0.002 3.998 8 N -0.879 5.879 9 Si 0.986 3.014 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.494 3.506 14 O -0.623 6.623 15 C -0.146 4.146 16 C -0.044 4.044 17 C -0.154 4.154 18 C -0.061 4.061 19 C -0.209 4.209 20 C 0.123 3.877 21 O -0.326 6.326 22 C 0.405 3.595 23 F -0.205 7.205 24 F -0.206 7.206 25 H 0.234 0.766 26 H 0.098 0.902 27 H 0.061 0.939 28 H 0.271 0.729 29 H 0.131 0.869 30 H 0.160 0.840 31 H 0.170 0.830 32 H 0.147 0.853 33 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.416 -3.545 -9.581 12.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.140 4.140 3 C 0.123 3.877 4 N -0.156 5.156 5 C -0.476 4.476 6 H 0.120 0.880 7 C -0.202 4.202 8 N -0.515 5.515 9 Si 0.810 3.190 10 H -0.183 1.183 11 H -0.206 1.206 12 H -0.203 1.203 13 C 0.285 3.715 14 O -0.511 6.511 15 C -0.150 4.150 16 C -0.063 4.063 17 C -0.172 4.172 18 C -0.079 4.079 19 C -0.227 4.227 20 C 0.078 3.922 21 O -0.243 6.243 22 C 0.316 3.684 23 F -0.187 7.187 24 F -0.188 7.188 25 H 0.251 0.749 26 H 0.116 0.884 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.149 0.851 30 H 0.178 0.822 31 H 0.187 0.813 32 H 0.165 0.835 33 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 6.206 -2.865 -9.463 11.673 hybrid contribution -0.065 -0.551 0.631 0.840 sum 6.141 -3.416 -8.832 11.287 Atomic orbital electron populations 1.25054 0.96276 1.03741 1.02746 1.23374 0.94973 0.97354 0.98343 1.17936 0.84791 0.90164 0.94802 1.43694 1.55280 1.12436 1.04224 1.19896 1.24632 0.93542 1.09553 0.87993 1.26155 0.94701 1.01737 0.97590 1.70118 1.21470 1.40273 1.19659 0.84963 0.78415 0.77555 0.78106 1.18268 1.20560 1.20344 1.18434 0.82377 0.87988 0.82696 1.90588 1.57994 1.23869 1.78656 1.19383 1.02393 0.95970 0.97220 1.21473 0.96937 0.90258 0.97643 1.21420 1.00197 1.00194 0.95347 1.21471 0.93738 0.95754 0.96954 1.21607 1.05781 0.94281 1.01047 1.19094 0.93985 0.84009 0.95076 1.86756 1.58468 1.29773 1.49298 1.24185 0.75076 0.96265 0.72923 1.93062 1.55389 1.75230 1.95041 1.93056 1.82219 1.95595 1.47900 0.74940 0.88364 0.92092 0.91873 0.85106 0.82241 0.81297 0.83530 0.75769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.80 19.25 74.32 1.43 -10.37 16 2 C -0.14 -7.05 11.27 31.12 0.35 -6.70 16 3 C 0.25 12.56 5.11 84.57 0.43 12.99 16 4 N -0.44 -23.05 2.59 -649.14 -1.68 -24.73 16 5 C -0.35 -17.43 7.10 84.09 0.60 -16.83 16 6 H 0.10 4.96 6.19 -2.91 -0.02 4.94 16 7 C 0.00 0.09 5.11 84.95 0.43 0.52 16 8 N -0.88 -44.63 9.09 21.68 0.20 -44.44 16 9 Si 0.99 38.28 29.56 68.60 2.03 40.31 16 10 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 11 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 12 H -0.28 -10.65 7.11 99.48 0.71 -9.94 16 13 C 0.49 26.08 7.01 86.66 0.61 26.68 16 14 O -0.62 -35.77 15.82 10.63 0.17 -35.60 16 15 C -0.15 -6.60 5.12 -20.01 -0.10 -6.70 16 16 C -0.04 -1.74 7.77 22.53 0.17 -1.57 16 17 C -0.15 -4.54 10.02 22.24 0.22 -4.31 16 18 C -0.06 -1.61 10.03 22.31 0.22 -1.39 16 19 C -0.21 -6.53 8.25 22.34 0.18 -6.34 16 20 C 0.12 4.88 6.46 22.85 0.15 5.03 16 21 O -0.33 -12.38 9.23 -74.99 -0.69 -13.08 16 22 C 0.40 10.19 5.98 113.37 0.68 10.87 16 23 F -0.21 -5.28 15.58 44.97 0.70 -4.58 16 24 F -0.21 -5.39 15.58 44.97 0.70 -4.69 16 25 H 0.23 8.28 7.80 -4.43 -0.03 8.25 16 26 H 0.10 5.04 6.64 -2.39 -0.02 5.03 16 27 H 0.06 3.08 7.53 -2.38 -0.02 3.06 16 28 H 0.27 13.12 8.31 -92.71 -0.77 12.35 16 29 H 0.13 5.60 6.66 -2.91 -0.02 5.58 16 30 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 31 H 0.17 2.92 8.06 -2.91 -0.02 2.89 16 32 H 0.15 4.00 5.10 -2.91 -0.01 3.98 16 33 H 0.23 3.28 8.14 -2.39 -0.02 3.26 16 Total: -1.00 -69.03 299.73 7.97 -61.07 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 1.16 Total: 23.86 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 5.38 Total: 1.87 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: -1.48 Total: -69.17 kcal Atomic # 8 Polarization: -48.15 SS G_CDS: -0.52 Total: -48.68 kcal Atomic # 9 Polarization: -10.66 SS G_CDS: 1.40 Total: -9.26 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Total: -69.03 7.97 -61.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311286614.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.430 kcal (2) G-P(sol) polarization free energy of solvation -69.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds