Wall clock time and date at job start Tue Mar 31 2020 06:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86798 * 119.99851 * 2 1 4 4 H 1.48500 * 109.46656 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47038 * 300.00267 * 3 2 1 6 6 H 1.48494 * 109.47170 * 60.00404 * 3 2 1 7 7 C 1.40049 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00133 * 179.97438 * 7 2 1 9 9 C 1.46376 * 119.99715 * 359.97438 * 7 2 1 10 10 O 1.21683 * 120.00215 * 359.97438 * 9 7 2 11 11 N 1.34777 * 119.99516 * 179.97438 * 9 7 2 12 12 C 1.47489 * 125.59527 * 0.02562 * 11 9 7 13 13 C 1.54322 * 107.03576 * 181.00323 * 12 11 9 14 14 C 1.55158 * 103.10027 * 22.23920 * 13 12 11 15 15 H 1.09003 * 111.00428 * 82.48783 * 14 13 12 16 16 O 1.42908 * 111.00419 * 206.33305 * 14 13 12 17 17 C 1.35897 * 117.00177 * 203.71187 * 16 14 13 18 18 C 1.38761 * 120.04768 * 354.33056 * 17 16 14 19 19 C 1.38133 * 119.96994 * 180.02562 * 18 17 16 20 20 C 1.38264 * 120.06880 * 359.97438 * 19 18 17 21 21 C 1.38370 * 120.09670 * 0.02562 * 20 19 18 22 22 Cl 1.73593 * 119.98387 * 180.02562 * 21 20 19 23 23 C 1.38287 * 120.02810 * 359.72981 * 21 20 19 24 24 C 1.47430 * 125.64659 * 179.97438 * 11 9 7 25 25 H 0.97001 * 120.00016 * 359.97438 * 1 2 3 26 26 H 1.09004 * 110.03112 * 61.64173 * 12 11 9 27 27 H 1.08997 * 109.96393 * 300.32867 * 12 11 9 28 28 H 1.09008 * 110.72110 * 263.78904 * 13 12 11 29 29 H 1.08995 * 110.72031 * 140.69366 * 13 12 11 30 30 H 1.08004 * 120.01479 * 0.03164 * 18 17 16 31 31 H 1.07995 * 119.96387 * 180.02562 * 19 18 17 32 32 H 1.08000 * 119.95362 * 180.02562 * 20 19 18 33 33 H 1.08002 * 120.03313 * 180.29916 * 23 21 20 34 34 H 1.09001 * 110.36377 * 37.07808 * 24 11 9 35 35 H 1.08998 * 110.46375 * 274.80119 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3463 -0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8820 2.3964 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0582 -2.4804 0.0004 11 7 1.9489 -3.6477 -0.0016 12 6 3.4168 -3.7914 -0.0023 13 6 3.7229 -5.3037 -0.0292 14 6 2.4224 -5.9154 -0.6140 15 1 2.4174 -5.8552 -1.7024 16 8 2.2496 -7.2651 -0.1771 17 6 1.4797 -8.0714 -0.9542 18 6 0.8071 -7.5458 -2.0482 19 6 0.0245 -8.3667 -2.8367 20 6 -0.0890 -9.7118 -2.5373 21 6 0.5805 -10.2388 -1.4470 22 17 0.4364 -11.9281 -1.0741 23 6 1.3690 -9.4216 -0.6579 24 6 1.3410 -4.9908 -0.0012 25 1 -0.4850 0.8401 0.0004 26 1 3.8361 -3.3443 0.8991 27 1 3.8372 -3.3123 -0.8864 28 1 3.9062 -5.6782 0.9780 29 1 4.5734 -5.5135 -0.6778 30 1 0.8956 -6.4954 -2.2832 31 1 -0.4985 -7.9577 -3.6884 32 1 -0.7010 -10.3520 -3.1553 33 1 1.8954 -9.8339 0.1903 34 1 0.4411 -5.0000 -0.6162 35 1 1.1072 -5.3029 1.0166 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334153771.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:43 Heat of formation + Delta-G solvation = -50.446962 kcal Electronic energy + Delta-G solvation = -20693.376358 eV Core-core repulsion = 17296.619777 eV Total energy + Delta-G solvation = -3396.756581 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.44021 -38.59972 -37.38346 -36.44185 -35.28958 -32.57552 -31.22045 -30.44133 -29.51633 -28.48846 -26.15006 -23.37333 -23.00413 -22.16502 -20.58207 -19.30990 -18.59527 -17.02403 -16.32174 -16.03101 -15.69782 -15.36556 -15.06641 -14.57189 -14.33674 -13.86594 -13.67802 -13.36232 -13.31426 -12.97324 -12.61778 -12.07805 -11.97518 -11.64354 -11.52352 -11.36617 -11.33469 -11.17056 -11.10945 -10.94624 -10.53616 -10.48853 -10.41324 -10.19852 -9.04052 -8.93605 -8.37339 -7.75092 -7.34941 -6.28232 -4.73438 0.95777 1.18476 1.83737 3.07836 3.09055 3.16970 3.21121 3.47082 4.02372 4.44829 4.49607 4.56425 4.71420 4.83866 4.90089 4.93226 5.06665 5.09935 5.26387 5.47369 5.59943 5.67681 5.69214 5.91085 5.96790 6.07306 6.15762 6.21180 6.28223 6.31215 6.45242 6.49130 7.17828 7.33999 7.36215 7.99234 8.29816 8.93708 9.35416 10.47760 10.66582 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.037101 B = 0.002964 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.514465 B = 9444.339481 C = 9870.213342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.086 3.914 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.570 3.430 10 O -0.574 6.574 11 N -0.644 5.644 12 C 0.122 3.878 13 C -0.125 4.125 14 C 0.065 3.935 15 H 0.089 0.911 16 O -0.298 6.298 17 C 0.151 3.849 18 C -0.202 4.202 19 C -0.065 4.065 20 C -0.154 4.154 21 C 0.002 3.998 22 Cl -0.069 7.069 23 C -0.150 4.150 24 C 0.099 3.901 25 H 0.269 0.731 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.140 0.860 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.069 0.931 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.289 -17.110 -4.376 18.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.134 4.134 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.573 4.573 8 H 0.089 0.911 9 C 0.377 3.623 10 O -0.456 6.456 11 N -0.386 5.386 12 C -0.002 4.002 13 C -0.162 4.162 14 C 0.009 3.991 15 H 0.107 0.893 16 O -0.211 6.211 17 C 0.104 3.896 18 C -0.220 4.220 19 C -0.083 4.083 20 C -0.173 4.173 21 C -0.024 4.024 22 Cl -0.040 7.040 23 C -0.169 4.169 24 C -0.026 4.026 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.157 0.843 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.158 0.842 34 H 0.088 0.912 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.477 -17.096 -4.152 18.154 hybrid contribution 0.400 0.733 -0.076 0.838 sum 4.877 -16.363 -4.228 17.590 Atomic orbital electron populations 1.70027 1.07111 1.27396 1.34961 1.25751 0.94666 1.00423 0.92579 0.86277 0.80471 0.81521 0.78307 1.18680 1.20087 1.20069 1.20902 0.93672 0.88760 1.54006 0.91067 1.18108 0.86706 0.81071 0.76382 1.90622 1.13865 1.85674 1.55405 1.48791 1.04638 1.04189 1.80991 1.21688 0.84190 0.92753 1.01581 1.22755 0.95475 0.95597 1.02416 1.23818 0.97655 0.78314 0.99351 0.89318 1.86098 1.64656 1.22324 1.47994 1.18805 0.90802 0.89912 0.90043 1.21568 1.01457 1.01772 0.97224 1.20931 0.96348 0.92392 0.98633 1.20932 1.02556 0.95944 0.97846 1.20530 0.99726 0.85162 0.97030 1.98368 1.97003 1.14389 1.94249 1.20173 1.03391 0.90637 1.02721 1.22170 0.95578 0.84636 1.00223 0.91996 0.91920 0.92127 0.89812 0.90034 0.84260 0.84677 0.84945 0.84205 0.91240 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.65 11.83 55.55 0.66 -21.99 16 2 C 0.09 2.35 5.50 -17.37 -0.10 2.25 16 3 Si 0.91 19.67 29.56 -169.99 -5.02 14.65 16 4 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.54 -14.84 9.06 -35.63 -0.32 -15.16 16 8 H 0.07 1.80 7.15 -52.49 -0.38 1.42 16 9 C 0.57 16.13 7.78 -12.99 -0.10 16.03 16 10 O -0.57 -18.57 15.28 5.20 0.08 -18.49 16 11 N -0.64 -14.42 3.34 -171.79 -0.57 -15.00 16 12 C 0.12 2.11 6.08 -2.81 -0.02 2.10 16 13 C -0.12 -1.68 6.67 -24.90 -0.17 -1.85 16 14 C 0.07 0.96 2.81 -24.57 -0.07 0.90 16 15 H 0.09 1.22 6.24 -51.93 -0.32 0.89 16 16 O -0.30 -4.28 9.95 -19.42 -0.19 -4.48 16 17 C 0.15 2.01 6.68 -39.22 -0.26 1.75 16 18 C -0.20 -2.54 8.94 -39.43 -0.35 -2.89 16 19 C -0.06 -0.70 10.04 -39.61 -0.40 -1.09 16 20 C -0.15 -1.59 9.83 -39.52 -0.39 -1.98 16 21 C 0.00 0.02 6.32 -39.51 -0.25 -0.22 16 22 Cl -0.07 -0.69 28.95 -51.86 -1.50 -2.19 16 23 C -0.15 -1.81 9.77 -39.40 -0.38 -2.20 16 24 C 0.10 1.89 6.53 -2.52 -0.02 1.88 16 25 H 0.27 7.18 8.29 -40.82 -0.34 6.84 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.14 1.79 5.65 -52.48 -0.30 1.49 16 31 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.07 1.42 7.69 -51.93 -0.40 1.02 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 316.14 15.07 4.76 4.76 Total: -1.00 -33.39 316.14 -8.53 -41.92 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -3.91 Total: 1.30 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -2.82 Total: -0.49 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.08 Total: -36.99 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.11 Total: -22.97 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.39 -8.53 -41.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334153771.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.530 kcal (2) G-P(sol) polarization free energy of solvation -33.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds