Wall clock time and date at job start Tue Mar 31 2020 06:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86798 * 119.99851 * 2 1 4 4 H 1.48500 * 109.46656 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47038 * 300.00267 * 3 2 1 6 6 H 1.48494 * 109.47170 * 60.00404 * 3 2 1 7 7 C 1.40049 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00133 * 179.97438 * 7 2 1 9 9 C 1.46376 * 119.99715 * 359.97438 * 7 2 1 10 10 O 1.21683 * 120.00215 * 359.97438 * 9 7 2 11 11 N 1.34777 * 119.99516 * 179.97438 * 9 7 2 12 12 C 1.47489 * 125.59527 * 0.02562 * 11 9 7 13 13 C 1.54322 * 107.03576 * 181.00323 * 12 11 9 14 14 C 1.55158 * 103.10027 * 22.23920 * 13 12 11 15 15 H 1.09003 * 111.00428 * 82.48783 * 14 13 12 16 16 O 1.42908 * 111.00419 * 206.33305 * 14 13 12 17 17 C 1.35897 * 117.00177 * 203.71187 * 16 14 13 18 18 C 1.38761 * 120.04768 * 354.33056 * 17 16 14 19 19 C 1.38133 * 119.96994 * 180.02562 * 18 17 16 20 20 C 1.38264 * 120.06880 * 359.97438 * 19 18 17 21 21 C 1.38370 * 120.09670 * 0.02562 * 20 19 18 22 22 Cl 1.73593 * 119.98387 * 180.02562 * 21 20 19 23 23 C 1.38287 * 120.02810 * 359.72981 * 21 20 19 24 24 C 1.47430 * 125.64659 * 179.97438 * 11 9 7 25 25 H 0.97001 * 120.00016 * 359.97438 * 1 2 3 26 26 H 1.09004 * 110.03112 * 61.64173 * 12 11 9 27 27 H 1.08997 * 109.96393 * 300.32867 * 12 11 9 28 28 H 1.09008 * 110.72110 * 263.78904 * 13 12 11 29 29 H 1.08995 * 110.72031 * 140.69366 * 13 12 11 30 30 H 1.08004 * 120.01479 * 0.03164 * 18 17 16 31 31 H 1.07995 * 119.96387 * 180.02562 * 19 18 17 32 32 H 1.08000 * 119.95362 * 180.02562 * 20 19 18 33 33 H 1.08002 * 120.03313 * 180.29916 * 23 21 20 34 34 H 1.09001 * 110.36377 * 37.07808 * 24 11 9 35 35 H 1.08998 * 110.46375 * 274.80119 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3463 -0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8820 2.3964 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0582 -2.4804 0.0004 11 7 1.9489 -3.6477 -0.0016 12 6 3.4168 -3.7914 -0.0023 13 6 3.7229 -5.3037 -0.0292 14 6 2.4224 -5.9154 -0.6140 15 1 2.4174 -5.8552 -1.7024 16 8 2.2496 -7.2651 -0.1771 17 6 1.4797 -8.0714 -0.9542 18 6 0.8071 -7.5458 -2.0482 19 6 0.0245 -8.3667 -2.8367 20 6 -0.0890 -9.7118 -2.5373 21 6 0.5805 -10.2388 -1.4470 22 17 0.4364 -11.9281 -1.0741 23 6 1.3690 -9.4216 -0.6579 24 6 1.3410 -4.9908 -0.0012 25 1 -0.4850 0.8401 0.0004 26 1 3.8361 -3.3443 0.8991 27 1 3.8372 -3.3123 -0.8864 28 1 3.9062 -5.6782 0.9780 29 1 4.5734 -5.5135 -0.6778 30 1 0.8956 -6.4954 -2.2832 31 1 -0.4985 -7.9577 -3.6884 32 1 -0.7010 -10.3520 -3.1553 33 1 1.8954 -9.8339 0.1903 34 1 0.4411 -5.0000 -0.6162 35 1 1.1072 -5.3029 1.0166 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334153771.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:43 Heat of formation + Delta-G solvation = -71.647504 kcal Electronic energy + Delta-G solvation = -20694.295683 eV Core-core repulsion = 17296.619777 eV Total energy + Delta-G solvation = -3397.675905 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.52533 -40.00557 -38.73725 -37.47125 -36.90237 -34.68169 -32.32949 -31.66930 -30.66434 -29.98879 -28.08544 -24.78927 -24.00176 -23.36171 -21.78685 -21.16584 -19.63420 -18.75717 -17.73061 -17.33176 -17.01319 -16.67395 -16.15495 -16.12726 -15.82758 -15.34541 -14.81341 -14.62350 -14.53725 -14.25474 -14.00756 -13.73924 -13.23149 -13.08138 -12.88158 -12.81201 -12.72840 -12.53981 -12.37197 -12.32784 -11.99853 -11.98040 -11.66830 -11.60364 -10.97724 -9.96361 -9.92643 -9.35442 -9.19636 -8.33636 -6.89485 0.04435 0.27206 0.96542 1.39767 1.40164 1.58527 1.95001 2.24292 2.40790 2.55175 2.86695 3.38751 3.50661 3.64366 3.74892 3.79628 4.01012 4.07224 4.12591 4.30394 4.33555 4.41824 4.61508 4.68543 4.81954 4.89810 4.90794 5.09292 5.16898 5.22494 5.29766 5.31476 5.49681 5.55169 5.97075 6.24776 6.33441 6.82985 7.38152 8.39075 8.62532 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.037101 B = 0.002964 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.514465 B = 9444.339481 C = 9870.213342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.026 3.974 3 Si 1.000 3.000 4 H -0.243 1.243 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.560 4.560 8 H 0.092 0.908 9 C 0.551 3.449 10 O -0.632 6.632 11 N -0.651 5.651 12 C 0.115 3.885 13 C -0.108 4.108 14 C 0.083 3.917 15 H 0.101 0.899 16 O -0.302 6.302 17 C 0.128 3.872 18 C -0.214 4.214 19 C -0.065 4.065 20 C -0.147 4.147 21 C -0.004 4.004 22 Cl -0.057 7.057 23 C -0.154 4.154 24 C 0.095 3.905 25 H 0.275 0.725 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.158 0.842 32 H 0.157 0.843 33 H 0.147 0.853 34 H 0.045 0.955 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.476 -17.795 -5.148 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.189 4.189 3 Si 0.819 3.181 4 H -0.166 1.166 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.596 4.596 8 H 0.110 0.890 9 C 0.358 3.642 10 O -0.520 6.520 11 N -0.391 5.391 12 C -0.008 4.008 13 C -0.146 4.146 14 C 0.026 3.974 15 H 0.119 0.881 16 O -0.215 6.215 17 C 0.082 3.918 18 C -0.233 4.233 19 C -0.083 4.083 20 C -0.166 4.166 21 C -0.031 4.031 22 Cl -0.028 7.028 23 C -0.173 4.173 24 C -0.029 4.029 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.112 0.888 29 H 0.139 0.861 30 H 0.149 0.851 31 H 0.176 0.824 32 H 0.175 0.825 33 H 0.165 0.835 34 H 0.064 0.936 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.721 -17.849 -4.924 19.698 hybrid contribution -0.349 0.780 0.157 0.869 sum 6.372 -17.068 -4.766 18.832 Atomic orbital electron populations 1.70202 1.09661 1.29053 1.36242 1.27055 0.95547 1.05115 0.91154 0.84932 0.79488 0.75120 0.78545 1.16603 1.19270 1.19449 1.21409 0.94780 0.89227 1.54167 0.88988 1.18503 0.86353 0.83135 0.76174 1.90561 1.16276 1.87172 1.57950 1.48538 1.07212 1.03964 1.79387 1.21979 0.80777 0.95967 1.02101 1.22731 0.95748 0.92160 1.03943 1.23566 0.96200 0.77995 0.99674 0.88105 1.86079 1.65104 1.21726 1.48591 1.19003 0.91733 0.90361 0.90670 1.21631 1.02253 1.01699 0.97694 1.21223 0.95731 0.92491 0.98889 1.21249 1.01870 0.96016 0.97477 1.20674 0.99528 0.85745 0.97114 1.98374 1.96922 1.13342 1.94211 1.20304 1.03624 0.90280 1.03123 1.22247 0.96557 0.84488 0.99614 0.91467 0.91682 0.91246 0.88829 0.86113 0.85144 0.82433 0.82537 0.83501 0.93599 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.27 11.83 21.84 0.26 -50.01 16 2 C 0.03 1.45 5.50 85.30 0.47 1.92 16 3 Si 1.00 40.15 29.56 68.60 2.03 42.18 16 4 H -0.24 -8.89 7.11 99.48 0.71 -8.18 16 5 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 7 C -0.56 -31.36 9.06 24.83 0.23 -31.14 16 8 H 0.09 4.58 7.15 -2.91 -0.02 4.56 16 9 C 0.55 32.42 7.78 86.36 0.67 33.09 16 10 O -0.63 -43.32 15.28 -4.29 -0.07 -43.39 16 11 N -0.65 -29.89 3.34 -815.64 -2.72 -32.61 16 12 C 0.11 3.82 6.08 86.64 0.53 4.35 16 13 C -0.11 -2.65 6.67 31.78 0.21 -2.44 16 14 C 0.08 2.37 2.81 31.99 0.09 2.46 16 15 H 0.10 2.67 6.24 -2.39 -0.01 2.65 16 16 O -0.30 -8.43 9.95 -92.39 -0.92 -9.35 16 17 C 0.13 3.34 6.68 22.50 0.15 3.49 16 18 C -0.21 -5.30 8.94 22.37 0.20 -5.10 16 19 C -0.07 -1.31 10.04 22.25 0.22 -1.08 16 20 C -0.15 -2.75 9.83 22.31 0.22 -2.53 16 21 C 0.00 -0.08 6.32 22.31 0.14 0.06 16 22 Cl -0.06 -1.05 28.95 -2.72 -0.08 -1.13 16 23 C -0.15 -3.56 9.77 22.39 0.22 -3.34 16 24 C 0.10 3.80 6.53 86.86 0.57 4.37 16 25 H 0.28 15.16 8.29 -92.71 -0.77 14.40 16 26 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 27 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.09 2.15 8.14 -2.38 -0.02 2.14 16 29 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.13 3.41 5.65 -2.91 -0.02 3.39 16 31 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 32 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 33 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 34 H 0.05 2.00 7.69 -2.39 -0.02 1.98 16 35 H 0.05 1.88 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -76.43 316.14 3.53 -72.90 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 1.11 Total: 17.29 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 3.91 Total: 4.12 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -2.46 Total: -82.62 kcal Atomic # 8 Polarization: -51.75 SS G_CDS: -0.98 Total: -52.74 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.08 Total: -1.13 kcal Total: -76.43 3.53 -72.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334153771.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.252 kcal (2) G-P(sol) polarization free energy of solvation -76.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds