Wall clock time and date at job start Tue Mar 31 2020 06:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86796 * 120.00433 * 2 1 4 4 H 1.48499 * 109.47059 * 179.72378 * 3 2 1 5 5 H 1.48496 * 109.47202 * 299.72530 * 3 2 1 6 6 H 1.48502 * 109.46886 * 59.72722 * 3 2 1 7 7 C 1.40051 * 119.99346 * 179.72738 * 2 1 3 8 8 H 1.07998 * 120.00213 * 333.12830 * 7 2 1 9 9 C 1.46381 * 119.99839 * 153.13768 * 7 2 1 10 10 O 1.21691 * 119.99806 * 347.88184 * 9 7 2 11 11 N 1.34776 * 120.00127 * 167.88466 * 9 7 2 12 12 C 1.47426 * 125.64682 * 0.02587 * 11 9 7 13 13 C 1.54908 * 104.82852 * 204.08974 * 12 11 9 14 14 C 1.55150 * 101.58367 * 322.98637 * 13 12 11 15 15 H 1.08996 * 110.72483 * 277.13996 * 14 13 12 16 16 O 1.42906 * 110.72071 * 154.04083 * 14 13 12 17 17 C 1.35900 * 116.99991 * 156.31341 * 16 14 13 18 18 C 1.38757 * 120.05039 * 185.12323 * 17 16 14 19 19 C 1.38135 * 119.97126 * 179.74909 * 18 17 16 20 20 C 1.38265 * 120.06579 * 0.55255 * 19 18 17 21 21 C 1.38366 * 120.09913 * 359.70403 * 20 19 18 22 22 Cl 1.73598 * 119.98591 * 180.02562 * 21 20 19 23 23 C 1.38287 * 120.03003 * 0.02562 * 21 20 19 24 24 C 1.47023 * 125.64839 * 179.71302 * 11 9 7 25 25 H 0.96995 * 120.00731 * 184.77001 * 1 2 3 26 26 H 1.08998 * 110.36382 * 322.92751 * 12 11 9 27 27 H 1.08994 * 110.36823 * 85.25131 * 12 11 9 28 28 H 1.09001 * 111.00551 * 81.06460 * 13 12 11 29 29 H 1.09007 * 111.00552 * 204.91446 * 13 12 11 30 30 H 1.08005 * 120.01399 * 0.02967 * 18 17 16 31 31 H 1.07995 * 119.96616 * 180.25357 * 19 18 17 32 32 H 1.07999 * 119.95117 * 179.72284 * 20 19 18 33 33 H 1.07999 * 120.03183 * 180.02562 * 23 21 20 34 34 H 1.08998 * 109.87881 * 298.39368 * 24 11 9 35 35 H 1.08993 * 109.88064 * 59.56075 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 3.7007 1.3462 0.0067 5 1 1.8872 2.3934 -1.2158 6 1 1.8771 2.3992 1.2092 7 6 2.0068 -1.2129 0.0058 8 1 1.5542 -2.0957 0.4327 9 6 3.3521 -1.2842 -0.5667 10 8 3.7767 -0.3632 -1.2393 11 7 4.1206 -2.3698 -0.3489 12 6 3.7333 -3.5519 0.4423 13 6 5.0736 -4.1766 0.9038 14 6 5.9722 -3.9387 -0.3384 15 1 5.8125 -4.7169 -1.0847 16 8 7.3494 -3.8769 0.0382 17 6 8.2654 -4.1673 -0.9227 18 6 9.6137 -4.2308 -0.6009 19 6 10.5429 -4.5312 -1.5779 20 6 10.1320 -4.7574 -2.8785 21 6 8.7888 -4.6895 -3.2037 22 17 8.2761 -4.9747 -4.8375 23 6 7.8546 -4.3946 -2.2277 24 6 5.4815 -2.5740 -0.8664 25 1 -0.4851 -0.8370 0.0698 26 1 3.1374 -3.2526 1.3045 27 1 3.1790 -4.2575 -0.1765 28 1 5.4674 -3.6557 1.7765 29 1 4.9594 -5.2418 1.1052 30 1 9.9360 -4.0500 0.4139 31 1 11.5918 -4.5847 -1.3265 32 1 10.8606 -4.9877 -3.6418 33 1 6.8061 -4.3420 -2.4814 34 1 5.4667 -2.5796 -1.9562 35 1 6.1377 -1.7816 -0.5065 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334153772.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:45 Heat of formation + Delta-G solvation = -58.941204 kcal Electronic energy + Delta-G solvation = -20886.174054 eV Core-core repulsion = 17489.049135 eV Total energy + Delta-G solvation = -3397.124919 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.55983 -38.77118 -37.55617 -36.53888 -35.57393 -32.93352 -31.15896 -30.76095 -29.64165 -28.62057 -26.04069 -23.44568 -22.99928 -22.27155 -20.74012 -19.35237 -18.64974 -17.58628 -16.54872 -16.15446 -16.02906 -15.28600 -15.06824 -14.69785 -14.18408 -14.07049 -13.85369 -13.57292 -13.25728 -12.94185 -12.72628 -12.39114 -12.15948 -11.81692 -11.66445 -11.61461 -11.51211 -11.33255 -11.16242 -10.77801 -10.67248 -10.56489 -10.03286 -9.37155 -9.12907 -8.84840 -8.44487 -7.96181 -7.55394 -7.09206 -4.89695 0.89382 1.08996 1.88796 2.94905 3.38909 3.46816 3.53312 3.98502 4.13286 4.27530 4.48246 4.50326 4.58621 4.70306 4.76493 4.84455 4.94468 5.04527 5.23554 5.37093 5.38628 5.50438 5.55819 5.82579 5.88506 5.95336 6.05182 6.08090 6.15452 6.18832 6.33367 6.40820 6.98805 7.22974 7.69715 7.76114 8.15710 8.80371 9.03825 10.10516 10.24306 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.021751 B = 0.003680 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.006287 B = 7607.398000 C = 7975.810204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.075 3.925 3 Si 1.084 2.916 4 H -0.255 1.255 5 H -0.284 1.284 6 H -0.305 1.305 7 C -0.608 4.608 8 H 0.073 0.927 9 C 0.567 3.433 10 O -0.614 6.614 11 N -0.637 5.637 12 C 0.119 3.881 13 C -0.125 4.125 14 C 0.067 3.933 15 H 0.087 0.913 16 O -0.295 6.295 17 C 0.150 3.850 18 C -0.151 4.151 19 C -0.069 4.069 20 C -0.154 4.154 21 C 0.007 3.993 22 Cl -0.068 7.068 23 C -0.202 4.202 24 C 0.097 3.903 25 H 0.281 0.719 26 H 0.083 0.917 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.142 0.858 34 H 0.057 0.943 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.779 -13.210 -1.171 22.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.145 4.145 3 Si 0.910 3.090 4 H -0.179 1.179 5 H -0.210 1.210 6 H -0.234 1.234 7 C -0.643 4.643 8 H 0.091 0.909 9 C 0.378 3.622 10 O -0.504 6.504 11 N -0.375 5.375 12 C -0.005 4.005 13 C -0.163 4.163 14 C 0.011 3.989 15 H 0.105 0.895 16 O -0.208 6.208 17 C 0.104 3.896 18 C -0.169 4.169 19 C -0.088 4.088 20 C -0.173 4.173 21 C -0.020 4.020 22 Cl -0.039 7.039 23 C -0.222 4.222 24 C -0.028 4.028 25 H 0.092 0.908 26 H 0.101 0.899 27 H 0.072 0.928 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.159 0.841 34 H 0.076 0.924 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.660 -11.068 -1.543 20.899 hybrid contribution -0.203 -2.044 -0.325 2.079 sum 17.458 -13.112 -1.868 21.913 Atomic orbital electron populations 1.70612 1.08017 1.32567 1.33460 1.26901 0.94942 1.04499 0.88191 0.83329 0.77797 0.72054 0.75774 1.17944 1.21017 1.23419 1.21841 0.98790 0.99108 1.44567 0.90926 1.18137 0.84765 0.78478 0.80866 1.90458 1.76202 1.37727 1.46013 1.48311 1.14094 1.19706 1.55401 1.21937 0.94610 0.87801 0.96130 1.22925 0.94609 1.01729 0.97036 1.23646 0.78171 0.98233 0.98865 0.89529 1.86181 1.15684 1.83430 1.35466 1.18920 0.89903 0.93671 0.87155 1.20571 0.89777 1.05388 1.01190 1.20900 0.99545 0.96732 0.91584 1.20944 0.93765 1.05070 0.97557 1.20664 0.93928 1.01545 0.85847 1.98384 1.91287 1.94418 1.19814 1.21247 1.00850 1.08005 0.92051 1.21997 0.87305 0.95137 0.98329 0.90818 0.89916 0.92821 0.89411 0.89736 0.84511 0.84422 0.84909 0.84064 0.92438 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.38 13.65 55.55 0.76 -22.62 16 2 C 0.07 2.14 5.47 -17.37 -0.09 2.04 16 3 Si 1.08 27.86 27.32 -169.99 -4.64 23.21 16 4 H -0.25 -6.86 5.91 56.52 0.33 -6.52 16 5 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.31 -7.34 7.11 56.52 0.40 -6.93 16 7 C -0.61 -17.05 9.13 -35.63 -0.33 -17.37 16 8 H 0.07 1.99 7.10 -52.49 -0.37 1.62 16 9 C 0.57 15.49 7.34 -12.98 -0.10 15.40 16 10 O -0.61 -18.36 13.24 5.20 0.07 -18.29 16 11 N -0.64 -14.03 3.33 -172.17 -0.57 -14.61 16 12 C 0.12 2.05 6.46 -2.53 -0.02 2.04 16 13 C -0.12 -1.68 6.81 -24.59 -0.17 -1.84 16 14 C 0.07 0.96 2.73 -24.89 -0.07 0.89 16 15 H 0.09 1.10 6.26 -51.93 -0.33 0.77 16 16 O -0.30 -4.12 9.88 -19.43 -0.19 -4.31 16 17 C 0.15 1.90 6.67 -39.22 -0.26 1.63 16 18 C -0.15 -1.57 9.99 -39.43 -0.39 -1.96 16 19 C -0.07 -0.60 10.04 -39.61 -0.40 -1.00 16 20 C -0.15 -1.48 9.83 -39.52 -0.39 -1.87 16 21 C 0.01 0.08 6.32 -39.52 -0.25 -0.17 16 22 Cl -0.07 -0.76 28.95 -51.86 -1.50 -2.26 16 23 C -0.20 -2.54 8.68 -39.40 -0.34 -2.88 16 24 C 0.10 1.82 6.43 -3.06 -0.02 1.80 16 25 H 0.28 7.68 8.72 -40.82 -0.36 7.33 16 26 H 0.08 1.47 7.33 -51.93 -0.38 1.09 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 30 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 31 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.14 1.81 5.61 -52.49 -0.29 1.52 16 34 H 0.06 1.09 7.79 -51.93 -0.40 0.69 16 35 H 0.07 1.33 8.06 -51.93 -0.42 0.92 16 LS Contribution 311.86 15.07 4.70 4.70 Total: -1.00 -32.33 311.86 -8.16 -40.48 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -3.95 Total: -3.00 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -2.82 Total: -3.30 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.19 Total: -37.23 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.12 Total: -22.60 kcal Atomic # 14 Polarization: 27.86 SS G_CDS: -4.64 Total: 23.21 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.33 -8.16 -40.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334153772.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.456 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds