Wall clock time and date at job start Tue Mar 31 2020 06:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86796 * 120.00433 * 2 1 4 4 H 1.48499 * 109.47059 * 179.72378 * 3 2 1 5 5 H 1.48496 * 109.47202 * 299.72530 * 3 2 1 6 6 H 1.48502 * 109.46886 * 59.72722 * 3 2 1 7 7 C 1.40051 * 119.99346 * 179.72738 * 2 1 3 8 8 H 1.07998 * 120.00213 * 333.12830 * 7 2 1 9 9 C 1.46381 * 119.99839 * 153.13768 * 7 2 1 10 10 O 1.21691 * 119.99806 * 347.88184 * 9 7 2 11 11 N 1.34776 * 120.00127 * 167.88466 * 9 7 2 12 12 C 1.47426 * 125.64682 * 0.02587 * 11 9 7 13 13 C 1.54908 * 104.82852 * 204.08974 * 12 11 9 14 14 C 1.55150 * 101.58367 * 322.98637 * 13 12 11 15 15 H 1.08996 * 110.72483 * 277.13996 * 14 13 12 16 16 O 1.42906 * 110.72071 * 154.04083 * 14 13 12 17 17 C 1.35900 * 116.99991 * 156.31341 * 16 14 13 18 18 C 1.38757 * 120.05039 * 185.12323 * 17 16 14 19 19 C 1.38135 * 119.97126 * 179.74909 * 18 17 16 20 20 C 1.38265 * 120.06579 * 0.55255 * 19 18 17 21 21 C 1.38366 * 120.09913 * 359.70403 * 20 19 18 22 22 Cl 1.73598 * 119.98591 * 180.02562 * 21 20 19 23 23 C 1.38287 * 120.03003 * 0.02562 * 21 20 19 24 24 C 1.47023 * 125.64839 * 179.71302 * 11 9 7 25 25 H 0.96995 * 120.00731 * 184.77001 * 1 2 3 26 26 H 1.08998 * 110.36382 * 322.92751 * 12 11 9 27 27 H 1.08994 * 110.36823 * 85.25131 * 12 11 9 28 28 H 1.09001 * 111.00551 * 81.06460 * 13 12 11 29 29 H 1.09007 * 111.00552 * 204.91446 * 13 12 11 30 30 H 1.08005 * 120.01399 * 0.02967 * 18 17 16 31 31 H 1.07995 * 119.96616 * 180.25357 * 19 18 17 32 32 H 1.07999 * 119.95117 * 179.72284 * 20 19 18 33 33 H 1.07999 * 120.03183 * 180.02562 * 23 21 20 34 34 H 1.08998 * 109.87881 * 298.39368 * 24 11 9 35 35 H 1.08993 * 109.88064 * 59.56075 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 3.7007 1.3462 0.0067 5 1 1.8872 2.3934 -1.2158 6 1 1.8771 2.3992 1.2092 7 6 2.0068 -1.2129 0.0058 8 1 1.5542 -2.0957 0.4327 9 6 3.3521 -1.2842 -0.5667 10 8 3.7767 -0.3632 -1.2393 11 7 4.1206 -2.3698 -0.3489 12 6 3.7333 -3.5519 0.4423 13 6 5.0736 -4.1766 0.9038 14 6 5.9722 -3.9387 -0.3384 15 1 5.8125 -4.7169 -1.0847 16 8 7.3494 -3.8769 0.0382 17 6 8.2654 -4.1673 -0.9227 18 6 9.6137 -4.2308 -0.6009 19 6 10.5429 -4.5312 -1.5779 20 6 10.1320 -4.7574 -2.8785 21 6 8.7888 -4.6895 -3.2037 22 17 8.2761 -4.9747 -4.8375 23 6 7.8546 -4.3946 -2.2277 24 6 5.4815 -2.5740 -0.8664 25 1 -0.4851 -0.8370 0.0698 26 1 3.1374 -3.2526 1.3045 27 1 3.1790 -4.2575 -0.1765 28 1 5.4674 -3.6557 1.7765 29 1 4.9594 -5.2418 1.1052 30 1 9.9360 -4.0500 0.4139 31 1 11.5918 -4.5847 -1.3265 32 1 10.8606 -4.9877 -3.6418 33 1 6.8061 -4.3420 -2.4814 34 1 5.4667 -2.5796 -1.9562 35 1 6.1377 -1.7816 -0.5065 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334153772.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:45 Heat of formation + Delta-G solvation = -79.182194 kcal Electronic energy + Delta-G solvation = -20887.051769 eV Core-core repulsion = 17489.049135 eV Total energy + Delta-G solvation = -3398.002634 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.59392 -40.21115 -38.85981 -37.60443 -37.02885 -35.12140 -32.27196 -31.84381 -30.70801 -30.07747 -27.98525 -24.77784 -24.00194 -23.35305 -21.92588 -21.22925 -19.66941 -19.48034 -17.79675 -17.49799 -16.98511 -16.82021 -16.18245 -16.07113 -15.85824 -15.61321 -14.98835 -14.73952 -14.64347 -14.43704 -14.20687 -13.88472 -13.54820 -13.23524 -13.01784 -12.86751 -12.77928 -12.55752 -12.34226 -12.14725 -12.00823 -11.77639 -11.69434 -11.41338 -11.03323 -10.11391 -9.95645 -9.41232 -9.33911 -9.25774 -7.09437 0.07866 0.26524 1.04467 1.38613 1.45583 1.87375 1.92350 2.07474 2.38035 2.57296 2.67489 3.22146 3.32570 3.47360 3.67894 3.83343 3.93833 4.07393 4.16905 4.23860 4.28592 4.51551 4.54643 4.63647 4.71823 4.77672 4.81803 5.04947 5.11883 5.20596 5.28480 5.32277 5.52460 5.61571 5.73749 6.06504 6.24759 6.61847 7.06947 7.99518 8.04370 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.021751 B = 0.003680 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.006287 B = 7607.398000 C = 7975.810204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.042 3.958 3 Si 1.115 2.885 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.277 1.277 7 C -0.622 4.622 8 H 0.072 0.928 9 C 0.559 3.441 10 O -0.649 6.649 11 N -0.644 5.644 12 C 0.111 3.889 13 C -0.109 4.109 14 C 0.083 3.917 15 H 0.106 0.894 16 O -0.301 6.301 17 C 0.124 3.876 18 C -0.151 4.151 19 C -0.059 4.059 20 C -0.150 4.150 21 C -0.009 4.009 22 Cl -0.073 7.073 23 C -0.217 4.217 24 C 0.095 3.905 25 H 0.281 0.719 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.127 0.873 30 H 0.153 0.847 31 H 0.177 0.823 32 H 0.156 0.844 33 H 0.131 0.869 34 H 0.048 0.952 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.983 -14.734 -0.545 24.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.175 4.175 3 Si 0.940 3.060 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.204 1.204 7 C -0.658 4.658 8 H 0.090 0.910 9 C 0.367 3.633 10 O -0.542 6.542 11 N -0.380 5.380 12 C -0.012 4.012 13 C -0.146 4.146 14 C 0.027 3.973 15 H 0.124 0.876 16 O -0.214 6.214 17 C 0.079 3.921 18 C -0.170 4.170 19 C -0.076 4.076 20 C -0.168 4.168 21 C -0.035 4.035 22 Cl -0.044 7.044 23 C -0.237 4.237 24 C -0.029 4.029 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.145 0.855 30 H 0.171 0.829 31 H 0.194 0.806 32 H 0.173 0.827 33 H 0.148 0.852 34 H 0.066 0.934 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 19.863 -12.641 -0.890 23.561 hybrid contribution -0.766 -1.653 -0.572 1.910 sum 19.097 -14.294 -1.462 23.899 Atomic orbital electron populations 1.70630 1.08153 1.32688 1.34471 1.27663 0.95317 1.06512 0.87996 0.82901 0.75610 0.70650 0.76885 1.20417 1.20937 1.20397 1.21978 0.99678 0.99192 1.44952 0.91004 1.18112 0.85174 0.79473 0.80503 1.90421 1.76935 1.39534 1.47317 1.48149 1.14923 1.19725 1.55191 1.22224 0.97095 0.86374 0.95503 1.22887 0.91620 1.03871 0.96237 1.23435 0.78882 0.95497 0.99526 0.87587 1.86160 1.15328 1.84045 1.35906 1.19203 0.90577 0.95338 0.86998 1.20917 0.88981 1.04538 1.02547 1.21349 1.01076 0.94649 0.90561 1.21318 0.93254 1.03592 0.98676 1.20846 0.94749 1.02389 0.85538 1.98379 1.91472 1.94481 1.20046 1.21226 1.00690 1.09138 0.92610 1.22114 0.85322 0.97623 0.97873 0.90827 0.90765 0.91362 0.89452 0.85506 0.82896 0.80612 0.82661 0.85156 0.93373 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.65 13.65 21.84 0.30 -47.35 16 2 C 0.04 2.44 5.47 85.31 0.47 2.91 16 3 Si 1.12 57.03 27.32 68.60 1.87 58.91 16 4 H -0.28 -15.24 5.91 99.48 0.59 -14.65 16 5 H -0.28 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.62 -35.49 9.13 24.83 0.23 -35.26 16 8 H 0.07 3.99 7.10 -2.91 -0.02 3.97 16 9 C 0.56 31.18 7.34 86.36 0.63 31.81 16 10 O -0.65 -39.89 13.24 -4.32 -0.06 -39.95 16 11 N -0.64 -28.66 3.33 -816.85 -2.72 -31.37 16 12 C 0.11 3.70 6.46 86.85 0.56 4.26 16 13 C -0.11 -2.65 6.81 31.98 0.22 -2.43 16 14 C 0.08 2.26 2.73 31.78 0.09 2.35 16 15 H 0.11 2.50 6.26 -2.39 -0.01 2.48 16 16 O -0.30 -7.96 9.88 -92.42 -0.91 -8.88 16 17 C 0.12 2.96 6.67 22.50 0.15 3.11 16 18 C -0.15 -2.73 9.99 22.37 0.22 -2.51 16 19 C -0.06 -0.80 10.04 22.25 0.22 -0.58 16 20 C -0.15 -2.44 9.83 22.31 0.22 -2.22 16 21 C -0.01 -0.18 6.32 22.31 0.14 -0.04 16 22 Cl -0.07 -1.57 28.95 -2.72 -0.08 -1.65 16 23 C -0.22 -5.28 8.68 22.39 0.19 -5.08 16 24 C 0.09 3.60 6.43 86.73 0.56 4.16 16 25 H 0.28 15.51 8.72 -92.71 -0.81 14.70 16 26 H 0.07 2.60 7.33 -2.39 -0.02 2.59 16 27 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.13 2.11 8.14 -2.38 -0.02 2.09 16 30 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 31 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 32 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 33 H 0.13 3.34 5.61 -2.91 -0.02 3.32 16 34 H 0.05 1.89 7.79 -2.39 -0.02 1.87 16 35 H 0.05 1.89 8.06 -2.39 -0.02 1.87 16 Total: -1.00 -71.24 311.86 3.27 -67.97 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: 0.96 Total: 1.86 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 3.90 Total: 0.47 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -2.42 Total: -78.73 kcal Atomic # 8 Polarization: -47.86 SS G_CDS: -0.97 Total: -48.83 kcal Atomic # 14 Polarization: 57.03 SS G_CDS: 1.87 Total: 58.91 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.08 Total: -1.65 kcal Total: -71.24 3.27 -67.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334153772.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.210 kcal (2) G-P(sol) polarization free energy of solvation -71.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds